View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_2 (Length: 578)
Name: NF8748_low_2
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 20 - 564
Target Start/End: Complemental strand, 11974043 - 11973499
Alignment:
| Q |
20 |
cctctacactgagagcaattttcgttgttgggtacaaaggtaaaacactttcaaattggttttcttccatagcttcccttgttaagttaagcttgtacga |
119 |
Q |
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| T |
11974043 |
cctctacactgagagcaattttcgttgttgggtacaaaggtaaaacactttcaaattggttttcttccatagcttgccttgttaagttaagcttgtacga |
11973944 |
T |
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| Q |
120 |
ctgtacaagttgcatatttctcccacaccttcatgaacttccaaacctcagatttctagaacttctaaggttggacaaactggaatacattgctgatcaa |
219 |
Q |
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| T |
11973943 |
ctgtacaagttgcatatttctcccacaccttcatgaacttccaaacctcagatttctagaacttctaaggttggacaaactggaatacattgctgatcaa |
11973844 |
T |
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| Q |
220 |
agtaatgacagtgaccgccacaatgacaaattgcaggctgctgcagtgcactttccatctttggaggaactcacaatctcagattgtcctaatctcaaga |
319 |
Q |
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| T |
11973843 |
agtaatgacagtgaccgccacaatgacaaattacaggctgctgcagtgcactttccatctttggaggaactcacaatctcagattgtcctaatctcaaga |
11973744 |
T |
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| Q |
320 |
ggtggtggaaaaaggataaaatcgaaaaagatttaccgttttttgcttgcctttcaaaactgaatgtaaattactgccctgaacttactagcatgcccct |
419 |
Q |
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| T |
11973743 |
ggtggtggagaaaggataaaatggaaaaagatttaccgttttttgcttgcctttcaaaactgaatgtaaattactgccctgaactaacttgcatgcccct |
11973644 |
T |
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| Q |
420 |
ttttcctggtcttgatgaagagctaatccttgtgggttctagcgtgaaaccgctactagattcaatatctcatggacatagaaagtgttatccgttttcc |
519 |
Q |
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| T |
11973643 |
ttttcctggtcttgatgaagagctaatccttgtgggttcgagcgtgaaaccgctactagattcaataaatcatggacatagaaagtgttatccgttttcc |
11973544 |
T |
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| Q |
520 |
aaactcaagtcaatgaaaattgcgaacatcgaggatagtcgttca |
564 |
Q |
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| T |
11973543 |
aaactcaagtcaatgaaaattgcgaacatcgaggatagtcgttca |
11973499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 332
Target Start/End: Original strand, 11861034 - 11861096
Alignment:
| Q |
270 |
ctttccatctttggaggaactcacaatctcagattgtcctaatctcaagaggtggtggaaaaa |
332 |
Q |
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| T |
11861034 |
ctttccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaa |
11861096 |
T |
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