View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8748_low_20 (Length: 299)
Name: NF8748_low_20
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 37080483 - 37080231
Alignment:
| Q |
1 |
atgataaatcaaaaggataataaaggagatagtcctttgcatctggctgcacaatcgtgtcatcccaaagctgttttttacttaacatgggatgaaagag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37080483 |
atgataaatcaaaaggataataaaggagatactcctttgcatctggctgcacaatcgtgtcatcctaaagctgttttttacttaacatgggatgaaagag |
37080384 |
T |
|
| Q |
101 |
tggatcttcagctggttaaccaaaacaaccaaacagctgttgaagttatcaatgcaagttcaaaacttcgtaattcgtccgctagagaggtatgtagaat |
200 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37080383 |
tggatatgcagctggttaaccaaaacaaccaaacagctgttgaagttatcaatgcaagttcaaaacttcgtaattcgtccgctagagaggtatgtagaat |
37080284 |
T |
|
| Q |
201 |
tggttttgacatgtttgagtgcttcgaagtagagttgattttcactcccatat |
253 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
37080283 |
tggttttgacatgtttgagtgcttcaaagtagagttgattttctctcccatat |
37080231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 37070650 - 37070434
Alignment:
| Q |
1 |
atgataaatcaaaaggataataaaggagatagtcctttgcatctggctgcacaatcgtgtcatcccaaagctgttttttacttaacatgggatgaaagag |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37070650 |
atgataaatcaaaaggataagaaaggagatactcctttgcatctggctgcaaaatcgtgtcatcccaaaactgttttttacttaacatgggatgaaagag |
37070551 |
T |
|
| Q |
101 |
tggatcttcagctggttaaccaaaacaaccaaacagctgttgaagttatcaatgcaagttcaaaacttcgtaattcgtccgctagagaggtatgtagaat |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| ||||| || ||||||||| ||| || ||||| || | ||| | ||||||||| || ||| |
|
|
| T |
37070550 |
tggatcttcatctggttaaccaaaacaatcaaacagctcttgaatttgtcaatgcaatttctcaatttcgtgatacatccacaagagaggtaagtgtaat |
37070451 |
T |
|
| Q |
201 |
tggttttgacatgtttg |
217 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
37070450 |
tgattttgacaggtttg |
37070434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 36953784 - 36953848
Alignment:
| Q |
1 |
atgataaatcaaaaggataataaaggagatagtcctttgcatctggctgcacaatcgtgtcatcc |
65 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||| |||| ||| ||| |||||||| |
|
|
| T |
36953784 |
atgataaatcaaaaagataataaaggagatacccctttgcatttggcagcaagatcatgtcatcc |
36953848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 12494462 - 12494413
Alignment:
| Q |
1 |
atgataaatcaaaaggataataaaggagatagtcctttgcatctggctgc |
50 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||| ||||||| |
|
|
| T |
12494462 |
atgataaatcaaaaagataataaaggagatacccctttgcatttggctgc |
12494413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University