View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_21 (Length: 290)
Name: NF8748_low_21
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 42519450 - 42519283
Alignment:
| Q |
8 |
agcttcagattaccaggaccctcgttccatataatcggggtttaagaccagaaaagagatatattctattctctttattagcagaaactaatgaataaag |
107 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519450 |
agcttcagattacctggaccctcgttccatacaatcggggtttaagaccagaaaagagatatattctattctctttattagcagaaactaatgaataaag |
42519351 |
T |
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| Q |
108 |
ttcataaaggaatttcagatgaatcacatccaccagaaaaagtaaaactactttacaaggattatatc |
175 |
Q |
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| T |
42519350 |
ttcataaaggaatttcagatgaatcacatccaccagaaaaattaaaactactttacaaggattatatc |
42519283 |
T |
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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 204 - 290
Target Start/End: Complemental strand, 42519254 - 42519168
Alignment:
| Q |
204 |
tgacaattaaaaccattatttccagaaattccaaggattccctttacatttgcagaaacagaaacaaacaaaaaggtacgtgaagtg |
290 |
Q |
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|||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519254 |
tgacaagtaaaaccattaattccagaaattacaaggattccctttacatttgcagaaacagaaacaaacaaaaaggtacgtgaagtg |
42519168 |
T |
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