View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_22 (Length: 289)
Name: NF8748_low_22
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 34826105 - 34826380
Alignment:
| Q |
1 |
tcatcttctccaaatcaagcatattcccatcccaattatatttctccttttcttcagcttcatcacagttctctttaccatcaccaacaatctcttcctc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826105 |
tcatcttctccaaatcaggcatattcccatcccaattatatttctccttttcttcagcttcatcacagttctctttaccatcaccaacaatctcttcctc |
34826204 |
T |
|
| Q |
101 |
taacttgttcnnnnnnntctcttcctctaatttcttcttttctttacgaccactacccttcattttctctttcacaacattctccaaaccatctactatc |
200 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826205 |
taacttgttcaaaaaaatatcttcctctaatttcttctttcctttgcgaccaccacccttcattttctctttcacaacattctccaaaccatctactatc |
34826304 |
T |
|
| Q |
201 |
aagcatgaactttctccaaattcaactcctatattcttcatattccttgtcatattccgtgtcactcgtatactct |
276 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34826305 |
aagcatgaactttctccaatttcaactcctatattcttcatattccttgtcatattccgtgtcacccgtatactct |
34826380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 34823321 - 34823363
Alignment:
| Q |
40 |
atttctccttttcttcagcttcatcacagttctctttaccatc |
82 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
34823321 |
atttctccttttcttcagcatcatcacaattctctttaccatc |
34823363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 28945958 - 28946000
Alignment:
| Q |
40 |
atttctccttttcttcagcttcatcacagttctctttaccatc |
82 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
28945958 |
atttctccttttcttcagcatcatcacaattctctttaccatc |
28946000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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