View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_25 (Length: 254)
Name: NF8748_low_25
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 8354296 - 8354052
Alignment:
| Q |
1 |
gttctaaaatcgaatcatatttatctgtaaggataaattacctcttatttaagaaggggtaacgtagtcctcaccaattgataaatataagttgaaactt |
100 |
Q |
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| T |
8354296 |
gttctaaaatcgaatcatatttatctgtaaggataaattacctcttattcaagaaggggtaacgtagtcctcaccaattgataaatataagttgaaactt |
8354197 |
T |
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| Q |
101 |
gataaaacattatttgaataccaagtactatggtagatttgaaatttgtggaaatacttgcgttttaaatttaccatagatttttggtaacgcctttgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8354196 |
gataaaacattatttgaataccaagtactatggtagatttgaaatttgtggaaatacttgcgttttaaatttaccatagatttttggtaacgcctttgat |
8354097 |
T |
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| Q |
201 |
aaaaagaaaaattactttctaaaacgactgaatgttcatctcact |
245 |
Q |
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|||||||||||||||||||| ||||||||||||||| || ||||| |
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| T |
8354096 |
aaaaagaaaaattactttctgaaacgactgaatgttgatatcact |
8354052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 8360516 - 8360468
Alignment:
| Q |
137 |
atttgaaatttgtggaaatacttgcgttttaaatttaccatagattttt |
185 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
8360516 |
atttgaaatttgtggaaatacctatgttttaaatttaccatagattttt |
8360468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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