View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_27 (Length: 250)
Name: NF8748_low_27
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 36235508 - 36235739
Alignment:
| Q |
1 |
taactatatctaactcctaatttcaattctttctcgatatatattcaatactacaaagctcacttaccctttttctgtatgagtacaccaaatgtcacaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36235508 |
taactatatctaactcctaatttcaattctttctcaatatatattcaatactacaaagctcacttaccctttttctgtatgagtacaccaaatgtcacaa |
36235607 |
T |
|
| Q |
101 |
ccccaacactagacttcaattgctccactggcagaatatctgtgttaatttatagcatagtcacataattctctttgacaaataagtggatgaagatcaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36235608 |
ccccaacactagacttcaactgctccactggcagaatatctgtgttaa-ttatagcatagtcacgtaattctctttgacaaataagtggatgaagatcaa |
36235706 |
T |
|
| Q |
201 |
ggaaagatcaagaagggattgagtaggggataa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
36235707 |
ggaaagatcaagaagggattgagtaggggataa |
36235739 |
T |
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