View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_31 (Length: 241)
Name: NF8748_low_31
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_31 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 8947444 - 8947220
Alignment:
| Q |
17 |
aattatatcattcacatggatttatcagctatgccaaaagtattctcaaatcaacatagttggtatgaatctaccctttctaaggtcactgccaacaata |
116 |
Q |
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| T |
8947444 |
aattatatcattcacatggatttatcagctatgccaaaagtattctcaaatcaacatagttggtatgaatctaccctttctaaggtcactgccaacaata |
8947345 |
T |
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| Q |
117 |
atttaacctcttctaaaatcatttatacatacaccaatgttgtgaatggtttttgtgcaaatatatcacctaaagagcatgaagctctcaaaacctctcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8947344 |
atttaacctcttctaaaatcatttatacatacaccaatgttatgaatggtttttgtgcaaatctatcacctaaagagcatgaagctctcaaaacctctcc |
8947245 |
T |
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| Q |
217 |
cggttacatttcctcaatacctgat |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
8947244 |
cggttacatttcctcaatacctgat |
8947220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 8973045 - 8973275
Alignment:
| Q |
17 |
aattatatcattcacatggatttatcagctatgccaaaagtattctcaaatcaacatagttggtatgaatctaccctttctaaggtcactgccaacaat- |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| || || ||| | || ||| |||||||| |
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| T |
8973045 |
aattatatcattcacatggatttatcagctatgccaaaagtattttcaaacaaaaatagttggtatgaatccactctctctcaagttactaccaacaatc |
8973144 |
T |
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| Q |
116 |
-----aatttaacctcttctaaaatcatttatacatacaccaatgttgtgaatggtttttgtgcaaatatatcacctaaagagcatgaagctctcaaaac |
210 |
Q |
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| T |
8973145 |
tcaataatcctacattttctaagatcatttatacatacaacaatgttataaatggttttagtgctaatctatcacctgaagagcatgaagctctcaaaac |
8973244 |
T |
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| Q |
211 |
ctctcccggttacatttcctcaatacctgat |
241 |
Q |
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| T |
8973245 |
ttccccagggtacatttcttcaatgcctgat |
8973275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 8961754 - 8961869
Alignment:
| Q |
122 |
acctcttctaaaatcatttatacatacaccaatgttgtgaatggtttttgtgcaaatatatcacctaaagagcatgaagctctcaaaacctctcccggtt |
221 |
Q |
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| T |
8961754 |
acctcttctaagatcatttatacatacactaatgtaatgaatggttttagtgcaagtctatcacctaaagagcatgaagctctcaaaacctcccatggct |
8961853 |
T |
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| Q |
222 |
acatttcctcaatacc |
237 |
Q |
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| T |
8961854 |
acatttcttcaatacc |
8961869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 8961637 - 8961707
Alignment:
| Q |
17 |
aattatatcattcacatggatttatcagctatgccaaaagtattctcaaatcaacatagttggtatgaatc |
87 |
Q |
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| T |
8961637 |
aattatataattcatatggatttatcggcaatgccaaaagcatattcaaaccagcatagttggtataaatc |
8961707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 21688500 - 21688375
Alignment:
| Q |
112 |
caataatttaacctcttctaaaatcatttatacatacaccaatgttgtgaatggtttttgtgcaaatatatcacctaaagagcatgaagctctcaaaacc |
211 |
Q |
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|||||||| ||||| ||||| ||| ||||||| |||||||| ||| ||||||||||| ||||||| |||||||| | ||||| ||| | ||||||||| |
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| T |
21688500 |
caataattctacctcatctaagatcttttatacgtacaccaacgttatgaatggttttagtgcaaacctatcacctgaggagcacgaatccctcaaaacc |
21688401 |
T |
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| Q |
212 |
tctcccggttacatttcctcaatacc |
237 |
Q |
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| | |||| |||||| |||||||| |
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| T |
21688400 |
ttctcgggtttcatttcttcaatacc |
21688375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 21688607 - 21688537
Alignment:
| Q |
17 |
aattatatcattcacatggatttatcagctatgccaaaagtattctcaaatcaacatagttggtatgaatc |
87 |
Q |
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|||||||| ||||| ||| ||||||||| |||||| ||| |||||||| |||||||||||||||||||| |
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| T |
21688607 |
aattatattattcatatgaatttatcagatatgcctaaatctttctcaaaccaacatagttggtatgaatc |
21688537 |
T |
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