View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_33 (Length: 240)
Name: NF8748_low_33
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_33 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 37231414 - 37231635
Alignment:
| Q |
18 |
actttcgcaagaagaatggagaagagtctaaattgccaccagaagattctatgtcaccttcaactaaagatggtatatgtacaactttcgtactcaaatt |
117 |
Q |
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| T |
37231414 |
actttcgcaagaagaatggagaagagtctaaattgccaccagaagattctatgtcaccttcaactaaagatggtatatgtacaactttcgtactcaaatt |
37231513 |
T |
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| Q |
118 |
ccttgcatgacccttacctcttaaatatagtgaatgaactgttccattattcatgagttcagcttannnnnnnaccttccacaggtgataaggatagcta |
217 |
Q |
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| T |
37231514 |
ccttgcatgacccttacctcttaaatatagtgaatgaactgttccattattcatgagttcaactta-ttttttacctcccataggtgataaagatagcta |
37231612 |
T |
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| Q |
218 |
tagtgatactagatccaaatata |
240 |
Q |
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| T |
37231613 |
tagtgatactagatccaaatata |
37231635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 37227922 - 37228090
Alignment:
| Q |
18 |
actttcgcaagaagaatggagaa---gagtctaaattgccaccagaagattctatgtcaccttcaactaaagatggtatatgtacaactttcgtactcaa |
114 |
Q |
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| T |
37227922 |
actttcgcaagaagaatggagaagaagagtctaaattgccaccagaagattcaatgtcaccttcaactaaagatggtatatgtacaactttcgtactcaa |
37228021 |
T |
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| Q |
115 |
attccttgcatgacccttacctcttaaatatagtgaatgaactgttccattattcatgagttcagctta |
183 |
Q |
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| T |
37228022 |
attccttgcatgacccttacctcttaaatatagtgaatgaactgttccattattcatgagctcaactta |
37228090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 37216484 - 37216563
Alignment:
| Q |
18 |
actttcgcaagaagaatggagaa---gagtctaaattgccaccagaagattctatgtcaccttcaactaaagatggtata |
94 |
Q |
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| T |
37216484 |
actttcgaaagaagaatggagaagaagagtctaaatttccaccagaagattctatgacaccttcaactaaagatggtata |
37216563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 37222508 - 37222587
Alignment:
| Q |
18 |
actttcgcaagaagaatggagaaga---gtctaaattgccaccagaagattctatgtcaccttcaactaaagatggtata |
94 |
Q |
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||||||| | ||||||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
37222508 |
actttcgaatgaagaatggagaagaaaagtctaaattgtcaccagatgattctatgacaccttcaactaaagatggtata |
37222587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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