View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_34 (Length: 239)
Name: NF8748_low_34
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 51430503 - 51430725
Alignment:
| Q |
1 |
tacaagtaaaataatctcaatctataactaataatttgaaaagaaataaataaattcaaagcacaaacttcaaaagatgagnnnnnnnntacctgcacgg |
100 |
Q |
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| T |
51430503 |
tacaagtaaaataatctcaatttataactaataatttgaaaagaaataaataaattcaaagaacaaacttcaaaagatgaggaaaaaaatacctgcacgg |
51430602 |
T |
|
| Q |
101 |
taaccctcttctcattgtaaacagcttctccaggaacaagattcttagtgacaagagcatcttctttacccttggcaatgaaaataccctcatgtctatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51430603 |
taaccctcttctcattgtaaacagcttctccaggaacaagattcttagtgacaagagcatcttctttacccttggcaatgaaaataccctcatgtctatg |
51430702 |
T |
|
| Q |
201 |
aggttcaacaatgaccttgctac |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
51430703 |
aggttcaacaatgaccttgctac |
51430725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 17128531 - 17128398
Alignment:
| Q |
90 |
tacctgcacggtaaccctcttctcattgtaaacagcttctccaggaacaagattcttagtgacaagagcatcttctttacccttggcaatgaaaataccc |
189 |
Q |
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||||||||| | ||| ||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
17128531 |
tacctgcacagaaactctcttctcattataaacagcctcaccaggaacaagattcttagtaacaagagcatcttctttacccttagcaatgaaaatacct |
17128432 |
T |
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| Q |
190 |
tcatgtctatgaggttcaacaatgaccttgctac |
223 |
Q |
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|| ||||||||||| ||||||| |||||||||| |
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| T |
17128431 |
tcgtgtctatgaggctcaacaacaaccttgctac |
17128398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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