View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_5 (Length: 467)
Name: NF8748_low_5
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Original strand, 46891413 - 46891849
Alignment:
| Q |
10 |
ataatacttgaatgaaattctgaatttttccgtcaaccacattgtcaggaatttttatatgaannnnnnnnnnnngagagaaggaatttttatatgatag |
109 |
Q |
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| T |
46891413 |
ataatacttgaatgaaattctgaatttttccgtcaaccacattgtcaggaatttttatatgatttttttttttttgagagaaggaatttttatatgatag |
46891512 |
T |
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| Q |
110 |
aaatgtctaagttttcataaattaaaatagctaatctcctccttattctaatggatcattactattgtattgtgttgaaagttaaaagnnnnnnntccac |
209 |
Q |
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| T |
46891513 |
aaatgtctaagttttcataaattaaaatagctaatccactc---attctaatggatcattactattgtattgtgttggaagttaaaagaaaaaaatccac |
46891609 |
T |
|
| Q |
210 |
tgttttacatttgttaagatactagaatttgttgtagtttagagtaatttgtgattcttaataaccagctataagctattgtattatgttcatcttttcc |
309 |
Q |
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| T |
46891610 |
tgttttacatttgttaagatactagaatttgttgtagtttagagtaatttgtgattcttaataaccagctataagctattgtattatgttcatcttttcc |
46891709 |
T |
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| Q |
310 |
atgcttgtttcttcttaaagtttctgttgataattgcctattaatttgatgcctgactcaacaaaaaatttgaggtacattgttcatttgcaaagtttta |
409 |
Q |
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| T |
46891710 |
aagcttgtttcttcttaaagtttctgttgataattgcctattaatttgatgtctgactcaacaataattttgaggtacattgttcatttgcaaagtttta |
46891809 |
T |
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| Q |
410 |
aattgtgaccatgccgcgatccttaatattggggtcaaat |
449 |
Q |
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| T |
46891810 |
aattgtgaccatgccgcgatccttaatattggggtcaaat |
46891849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 378 - 437
Target Start/End: Original strand, 46873988 - 46874047
Alignment:
| Q |
378 |
tttgaggtacattgttcatttgcaaagttttaaattgtgaccatgccgcgatccttaata |
437 |
Q |
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| T |
46873988 |
tttgaggtgcattgctcatttgcaaagttttaaattgcgaccatgccgcgatccttaata |
46874047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 46900066 - 46900123
Alignment:
| Q |
10 |
ataatacttgaatgaaattctgaatttttccgtcaaccacattgtcaggaatttttat |
67 |
Q |
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| T |
46900066 |
ataatacttgaatgaaattctgctttttcccatcaaccccattgtcaggaatttttat |
46900123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 46900112 - 46900205
Alignment:
| Q |
91 |
aggaatttttatatgatagaaatgtctaagttttcataaattaaaatagctaatctcctccttattctaatggatcattactattgtattgtgt |
184 |
Q |
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| T |
46900112 |
aggaatttttatttgctagagatgactagattttcataaatttaaatattcaatcatctccatattctagtggatgattactattgtatggtgt |
46900205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 92 - 323
Target Start/End: Complemental strand, 48231987 - 48231760
Alignment:
| Q |
92 |
ggaatttttatatgatagaaatgtctaagttttcataaattaaaatagctaatctcctccttattctaatggatcattactattg--tattgtgttgaaa |
189 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
48231987 |
ggaaattttatatgatagaaatgtctaacttttcataaactaaaatagctaatcccctccttattctaatggatcattactattgtatatggtgttgaaa |
48231888 |
T |
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| Q |
190 |
gttaaaag-nnnnnnntccactgttttacatttgttaagatactagaatttgttgtagtttagagtaatttgtgattcttaataaccagctataagctat |
288 |
Q |
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| T |
48231887 |
attaaaagaaaaaaaatccacaactttacatttgttaagatactagaatttgttgtagtatggagtaatttgtgattcttaataacc-------agctat |
48231795 |
T |
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| Q |
289 |
tgtattatgttcatcttttccatgcttgtttcttc |
323 |
Q |
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|||||||||||||||||||||| | |||||||||| |
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| T |
48231794 |
tgtattatgttcatcttttccaagtttgtttcttc |
48231760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 92 - 323
Target Start/End: Complemental strand, 48237027 - 48236800
Alignment:
| Q |
92 |
ggaatttttatatgatagaaatgtctaagttttcataaattaaaatagctaatctcctccttattctaatggatcattactattg--tattgtgttgaaa |
189 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
48237027 |
ggaaattttatatgatagaaatgtctaacttttcataaactaaaatagctaatcccctccttattctaatggatcattactattgtatatggtgttgaaa |
48236928 |
T |
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| Q |
190 |
gttaaaag-nnnnnnntccactgttttacatttgttaagatactagaatttgttgtagtttagagtaatttgtgattcttaataaccagctataagctat |
288 |
Q |
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| T |
48236927 |
attaaaagaaaaaaaatccacaactttacatttgttaagatactagaatttgttgtagtatggagtaatttgtgattcttaataacc-------agctat |
48236835 |
T |
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| Q |
289 |
tgtattatgttcatcttttccatgcttgtttcttc |
323 |
Q |
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|||||||||||||||||||||| | |||||||||| |
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| T |
48236834 |
tgtattatgttcatcttttccaagtttgtttcttc |
48236800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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