View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8748_low_9 (Length: 404)
Name: NF8748_low_9
Description: NF8748
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8748_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 60 - 387
Target Start/End: Original strand, 31599401 - 31599728
Alignment:
| Q |
60 |
cttttcacatgctctatgtggtgttttatcaactttagcagcttctcctaacaaatgaactctcataacaccttctacatttgattgtttgtgaaaaaga |
159 |
Q |
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| T |
31599401 |
cttttcacatgctctatgtggtgttttatcaacttttgcagcttctcctaacaaatgaactctcataacaccttctacatttgattgtttgtgaaaaaga |
31599500 |
T |
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| Q |
160 |
aaggacaatcgatgttgcttgtttttcctgtgctacattgtgcatgtctaaatgaatggttgaatagggttgaaactgcagaaagtgtttcaacattagt |
259 |
Q |
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| T |
31599501 |
aaggagaatcgatgttgcttgtttttcctgtgctacattgtgtatgtctaaatgaatggttgaatagggttgaaactgcagcaagtgtttcaacattagt |
31599600 |
T |
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| Q |
260 |
gttttcattttgttcttcacagtctttgaaagtgtgtgttatgttttccaagtcttgtactgattttgtgagggcttgtgaaccactttgtgtgttgatg |
359 |
Q |
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| T |
31599601 |
gttttcattttgttcttcacagtctttgaaagtgtgtgttatgttttccaagtcttgtactgattttgtgagggcttgtgaaccacttagtgtgttgatg |
31599700 |
T |
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| Q |
360 |
tgtgctgctaaaagggatgtcgttgttc |
387 |
Q |
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| T |
31599701 |
tgtgctgctaaaagggatgtcgttgttc |
31599728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31599374 - 31599407
Alignment:
| Q |
1 |
cacatattcatcatcaagctctctttgcttttca |
34 |
Q |
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| T |
31599374 |
cacatattcatcatcaagctctctttgcttttca |
31599407 |
T |
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