View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_high_1 (Length: 608)
Name: NF8749_high_1
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 20 - 595
Target Start/End: Complemental strand, 27212785 - 27212209
Alignment:
| Q |
20 |
aaagggtagcattactcttttggtcatttaatttcattttgaatttaatttaatcctttgtgtttgtttggctaagagattagtctcatattctcaaatg |
119 |
Q |
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| T |
27212785 |
aaagggtagcattactcttttggtcatttaatttcattttgaatttaatttaatcctttgtgtttgtttggctaagagattagtctcatattctcaaatg |
27212686 |
T |
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| Q |
120 |
gtaataatgatgacctaatttgatttgttgatgactttcttctacaactttttggattttggttagtggcacctttgatatagggattttcattccgtgc |
219 |
Q |
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| T |
27212685 |
gtaataatgatgacctaatttgatttgttgatgactttcttctacaactttttcgattttggttagtggcacctttgatatagggattttcattccgtgc |
27212586 |
T |
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| Q |
220 |
tacgactcaaggacacaattacatattcaggccgtcagatcttaaatccacgaccgtaatcattcataattagtttgaatgtaggataatctgagtcatt |
319 |
Q |
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| T |
27212585 |
tacgactcaaggacgcagttacatattcaagccgtcagatcttaaatccacagccgtaatcattcataattagtttgaatgtaggataatctgagtcatt |
27212486 |
T |
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| Q |
320 |
tgatctccgattaatgacgaagatgtaaaactactagcaaccacatgtattttttgcaacatgcatatcagacttatataaaatttgaatctctcttcac |
419 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
27212485 |
tgatctccgattaatgacgaagatgtaaaactactggtaaccacatgtattttttgcaacatgcatattagacttatataaaatttgaatctctcttcac |
27212386 |
T |
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| Q |
420 |
taattatttacaccttttgcactccatatcatgattttaaattgcagtctacaaccataattacagtagcatcggtcatatttgcacaaaattgtggaaa |
519 |
Q |
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| T |
27212385 |
taattatttacaccttttgcactccatatcatggttttaaattgcagtctacaaccataattacagtagcatcggtcatatttgcacaaaattgtggaaa |
27212286 |
T |
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| Q |
520 |
catgatgttg-atgtattacacaaaaaatgacttattgaaactgaaaatcaagttaaagtactaaaagtataatcta |
595 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27212285 |
catgatgttgaatgtattacacaaaaaatgacttattgaaactgaaaatcaagttaaagtactaaaagtataatcta |
27212209 |
T |
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