View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_high_4 (Length: 389)
Name: NF8749_high_4
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 3302975 - 3303345
Alignment:
| Q |
1 |
agcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaattcggccctcc |
100 |
Q |
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| T |
3302975 |
agcaattgcaaacgcaaggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaattcggccctcc |
3303074 |
T |
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| Q |
101 |
cctgctgtcaccaattgctgccatcacctaggcctgctggcttctcctcctttttctgttgctatcaatgttgtcaaaatcaatatttacctagggttga |
200 |
Q |
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| T |
3303075 |
cctgctgtcaccaattgctgccatcacctaggcctgctggcttctcctcctttttctgttgctatcaatgttgtcaaaatcaatatttacctagggttga |
3303174 |
T |
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| Q |
201 |
gacttgagagtgggtgaatgataataataggattgtggcacagattctaagttccttcttaaaattcaaaatgttaccttaaacactcacgcacatgcct |
300 |
Q |
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| T |
3303175 |
gacttgagagtgggtgaatgataataataggattgtggcacagattctaagttccttcttaaaattcaaaatgttaccttaaacactcacgcacatgcct |
3303274 |
T |
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| Q |
301 |
gatagaaaataagtaataacatagataagcaaaatgacctctaaatcatattcacaaggtcacatacaact |
371 |
Q |
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| T |
3303275 |
gatagaaaataagtaataacatagataagcaaaatgacctctaaatcatattcacaaggtcacatacaact |
3303345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 3291126 - 3291197
Alignment:
| Q |
18 |
ggctttggtaaccatctcatttgactgaggtgtgtaactcggtaggagttaaaattattggtaacaagcaaa |
89 |
Q |
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||||||||| ||||||||||||| ||||| ||||| | |||| |||||| ||||||||||| ||||||||| |
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| T |
3291126 |
ggctttggttaccatctcatttgcctgagttgtgtgaggcggttggagttgaaattattggtgacaagcaaa |
3291197 |
T |
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