View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_10 (Length: 348)
Name: NF8749_low_10
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 17 - 332
Target Start/End: Complemental strand, 2928253 - 2927938
Alignment:
| Q |
17 |
gttttctattgatgcatctatatcacctttgtaacattctattacgactatctaacaatgatctggtatggcttttttctgtgctgcatctgctgtgttc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928253 |
gttttctattgatgcatctatatcacctttgtaacattctattacgactatctaacagtgatctggtatggcttttttctgtgctgcatctgctgtgttc |
2928154 |
T |
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| Q |
117 |
taatggtcctttctgtcattcaatgttgtcttctttgttaaatatatgcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928153 |
taatggtcctttctgtcattcaatgttgtcttctttgttacatatatgcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttga |
2928054 |
T |
|
| Q |
217 |
agctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggttgctcctaaagtctacgaggagctgggaaagttaagcggacataac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928053 |
agctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggtggctcctaaagtctacgaggagctgggaaagttaagcggacataac |
2927954 |
T |
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| Q |
317 |
aatgattttatgttta |
332 |
Q |
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|||||||||||||||| |
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| T |
2927953 |
aatgattttatgttta |
2927938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 64 - 332
Target Start/End: Original strand, 2311068 - 2311332
Alignment:
| Q |
64 |
ctatctaacaatgatctggtatggcttttttctgtgctgcatctgctgtgttctaatggtcctttctgtcattcaatgttgtcttctttgttaaatatat |
163 |
Q |
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| T |
2311068 |
ctatctaacaatgatctgatatagcttttttctgtcctgcatctgctatgatctaatggtcccttctgtcattcaatgttgtctcatt----acatatat |
2311163 |
T |
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| Q |
164 |
gcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatc |
263 |
Q |
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| T |
2311164 |
gcttatgcttgttctcaacccactttattcacaatttgcatgtttgaatttgaagctgattacatcgggcttcaactaatggcagcagctggctatgatc |
2311263 |
T |
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| Q |
264 |
ctcgggttgctcctaaagtctacgaggagctgggaaagttaagcggacataacaatgattttatgttta |
332 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2311264 |
ctcgggtggcacctaaagtctacgaggagctgggaaagttaagcagacataacaatgattttatgttta |
2311332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 264
Target Start/End: Complemental strand, 10173789 - 10173717
Alignment:
| Q |
192 |
tcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
264 |
Q |
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||||||||| || || |||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
10173789 |
tcacaatttacaagtgtgaatttgaagcggattacattgggcttctactaatggcagccgctggctatgatcc |
10173717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 172 - 264
Target Start/End: Complemental strand, 1238024 - 1237932
Alignment:
| Q |
172 |
ttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
264 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |||||||||||| |
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| T |
1238024 |
ttgttctcaatccaatttattcacaatttgcaggtttgaatttgaagcggattacattgggcttctactaatggcagcagttggctatgatcc |
1237932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 154 - 268
Target Start/End: Complemental strand, 29088974 - 29088860
Alignment:
| Q |
154 |
ttaaatatatgcttatgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagct |
253 |
Q |
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|||||||||| || ||| || ||||||| ||||| |||||||||||||||| ||||||||||||| |||||| || |||||||||||||||||| ||||| |
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| T |
29088974 |
ttaaatatatactcatgcttattctcaatccaatgtattcacaatttgcagttttgaatttgaagttgattacattgggcttctactaatggcatcagct |
29088875 |
T |
|
| Q |
254 |
ggctatgatcctcgg |
268 |
Q |
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||||||||||||||| |
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| T |
29088874 |
ggctatgatcctcgg |
29088860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 1175417 - 1175509
Alignment:
| Q |
172 |
ttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcc |
264 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
1175417 |
ttgttctcaacaaaatttattcacaatttgcaggtttgaatatgaagctgattacattgggcttctactgatggcagcagctggctatgatcc |
1175509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 794442 - 794359
Alignment:
| Q |
168 |
atgtttgttctcaacccaatttattcacaatttgcaggtttgaatttgaagctgattatatcgggcttctactaatggcagcag |
251 |
Q |
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|||||||||||||| ||||| |||||| |||||| ||||||||||||||| ||||| || |||||| ||||||| ||||||| |
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| T |
794442 |
atgtttgttctcaatccaatatattcataatttgaaggtttgaatttgaatacgattacattgggcttatactaatcgcagcag |
794359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 285
Target Start/End: Complemental strand, 23906529 - 23906457
Alignment:
| Q |
213 |
ttgaagctgattatatcgggcttctactaatggcagcagctggctatgatcctcgggttgctcctaaagtcta |
285 |
Q |
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||||||||||||| || |||||||| || | ||| | |||||||||||||| ||||| || ||||||||||| |
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| T |
23906529 |
ttgaagctgattacattcggcttctattacttgcatcggctggctatgatccccgggtggcacctaaagtcta |
23906457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 43286845 - 43286724
Alignment:
| Q |
173 |
tgttctcaacccaatttatt-cacaatttgcaggtttgaatttgaagctgatta--------tatcgggcttctactaatggcagcagctggctatgatc |
263 |
Q |
| |
|
|||||||||||||||||||| || |||||| ||| ||||||||||||||||||| ||| |||||||||||||| || | ||||||||||||| |
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| T |
43286845 |
tgttctcaacccaatttatttcataatttgtaggattgaatttgaagctgattacattgggcaatctggcttctactaatgacatcggctggctatgatc |
43286746 |
T |
|
| Q |
264 |
ctcgggttgctcctaaagtcta |
285 |
Q |
| |
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| || |||| ||||||||||| |
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|
| T |
43286745 |
cccgacttgcacctaaagtcta |
43286724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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