View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_11 (Length: 338)
Name: NF8749_low_11
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 31719108 - 31719318
Alignment:
| Q |
1 |
aacaaaacaacaaagagttaaagcaaataaaatgattttgttttataaaaggctaaccttttctacccaggaatctttatactctacaatgaatggatta |
100 |
Q |
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| T |
31719108 |
aacaaaacaacaaagagttaaagcaaataaaatgattttgttttataaaaggctaaccttttctacccaggaatctttatactctacaatgaacggatta |
31719207 |
T |
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| Q |
101 |
cgaactttagatataagttccatctgcaaaacaaggagtgtacaacaaagcatcttagaatctaataataaacttagcaagacaaaataagtttccaagt |
200 |
Q |
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| T |
31719208 |
cgaactttagatataagttccatctgcaaaacaaggagtgtacaacaaagcatcttagaatctaataataaacttagcaagacaaaataagtttccaagt |
31719307 |
T |
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| Q |
201 |
tccacatttta |
211 |
Q |
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||||||||||| |
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| T |
31719308 |
tccacatttta |
31719318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 31719333 - 31719450
Alignment:
| Q |
200 |
ttccacattttacattatttagcaataaatagaaattatnnnnnnnttaacataaagttccaatgtcacattttgactaaaaataacctaagctaaacat |
299 |
Q |
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| T |
31719333 |
ttccacattttacattatttagcaataaatagaaattataaaaaa-ttaacataaagttccaatgtcacattttgactaaaaataacctaagctaaacat |
31719431 |
T |
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| Q |
300 |
cattaaattaacttatgaa |
318 |
Q |
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| T |
31719432 |
cattaaattaacttatgaa |
31719450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 36069823 - 36069892
Alignment:
| Q |
56 |
accttttctacccaggaatctttatactctacaatgaatggattacgaactttagatataagttccatct |
125 |
Q |
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| T |
36069823 |
accttttctacccatgaatctttatactccacaatgaatgggtttcgtaatttagagataagctccatct |
36069892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 38242144 - 38242062
Alignment:
| Q |
49 |
aaggctaaccttttctacccaggaatctttatactctacaatgaatggattacgaactttagatataagttccatctgcaaaa |
131 |
Q |
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|||||| |||||||||||||| |||||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||||| |
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| T |
38242144 |
aaggctgaccttttctacccaagaatctttatactccacaataaagggattgcgaactttagatataagctccatctgcaaaa |
38242062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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