View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_13 (Length: 273)
Name: NF8749_low_13
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 38581054 - 38581326
Alignment:
| Q |
1 |
ttgttcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgcttgaacctctttatggttttgctgctatgaagaagagttatgagtt |
100 |
Q |
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| T |
38581054 |
ttgttcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgcttgaacctctttatggttttgctgctatgaagaagagttatgagtt |
38581153 |
T |
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| Q |
101 |
gttgaaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtgctgttattagtgggatgtttagcgtgattgtggtacatggt |
200 |
Q |
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| T |
38581154 |
gttgaaggggagggttagatatgcttcacttttagtttgtgggtacttgtttctttgtgctgttattagtgggatgtttagcgtgattgtggtacatggt |
38581253 |
T |
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| Q |
201 |
ggtgatggctatggtgtattttctaggatttttattggtgggttcttggttggtgttcttgtcattgtgaatt |
273 |
Q |
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| T |
38581254 |
ggtgatggctatgatgtattttctaggattttcattggtgggttcttggttggtgttcttgtcattgtgaatt |
38581326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 6883874 - 6884144
Alignment:
| Q |
1 |
ttgttcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgcttgaacctctttatggttttgctgctatgaagaagagttatgagtt |
100 |
Q |
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| T |
6883874 |
ttgttcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgcttgaacctctttatggttttgctgctatgaagaagagttatgagtt |
6883973 |
T |
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| Q |
101 |
gttgaaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtgctgttattagtgggatgtttagcgtgattgtggtacatggt |
200 |
Q |
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| T |
6883974 |
gttgaagggaagggttagatatgctgcacttttggtttgtggctatttgcttatttgtgctgttattagtggaatgtttagtgtggttgtggtacatggt |
6884073 |
T |
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| Q |
201 |
ggtgatggctatggtgtattttctaggatttttattggtgggttcttggttggtgttcttgtcattgtgaa |
271 |
Q |
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| T |
6884074 |
ggtgatggttatggcgtgttttctaggattgtcattggtgggttcttggttggtgttcttgtcattgtgaa |
6884144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 4098417 - 4098571
Alignment:
| Q |
5 |
tcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgcttgaacctctttatggttttgctgctatgaagaagagttatgagttgttg |
104 |
Q |
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||||||||| |||||| || |||||||||||||||| |||| ||| |||| |||| | | ||||||||||| ||||||||||||||||||||||||||| |
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| T |
4098417 |
tcatgtttacataacttctccgtggcatttggctagtattgtttctatgctagaacatgtgtatggttttgcagctatgaagaagagttatgagttgttg |
4098516 |
T |
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| Q |
105 |
aaggggagggttagatatgcttcacttttagtttgtgggtatttgtttatttgtg |
159 |
Q |
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| T |
4098517 |
aagggtagggttagttatgcttctgtttttgtttgtgggtatttgcttatctgtg |
4098571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 4181630 - 4181528
Alignment:
| Q |
5 |
tcatgtttatataactgctttgtggcatttggctagtgttgtgtctgtgcttgaacctctttatggttttgctgctatgaagaagagttatgagttgttg |
104 |
Q |
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| T |
4181630 |
tcatgtttacataactgatttgtggcatttggctagtgttgtttctgtgcttcaacatgtttatggttttgttgctctgaagaagagt--tgagttgttt |
4181533 |
T |
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| Q |
105 |
aaggg |
109 |
Q |
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||||| |
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| T |
4181532 |
aaggg |
4181528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 4098608 - 4098670
Alignment:
| Q |
211 |
atggtgtattttctaggatttttattggtgggttcttggttggtgttcttgtcattgtgaatt |
273 |
Q |
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||| ||| |||||||||||| ||||||| ||||| ||||||||||| ||| | |||||||||| |
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| T |
4098608 |
atgatgtgttttctaggattgttattggcgggtttttggttggtgtgcttattattgtgaatt |
4098670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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