View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_15 (Length: 257)
Name: NF8749_low_15
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 43340295 - 43340457
Alignment:
| Q |
1 |
aaatattatagagcaaagaagaagagagaaaccctacaaaggtagagggagtgataataacaaaggatttgtgatctagctttgttttgc-tttaagtct |
99 |
Q |
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| T |
43340295 |
aaatattatagagcaaagaagaagagagaaaccctacaaaggtagagggagtgataataacaaaggatttgtgatctagctttgttttgcttttaagtct |
43340394 |
T |
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| Q |
100 |
ttttatttgcacgcttagagggtcctatttattctctctctcatctttataataaagggagagat |
164 |
Q |
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| T |
43340395 |
ttttatttgcacgcttagagggtccta--tattctctctctcctctttataataaagggagagat |
43340457 |
T |
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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 43340487 - 43340528
Alignment:
| Q |
195 |
ctatggagagagagattccaaagcaactcaactcaagtccctaa |
238 |
Q |
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| T |
43340487 |
ctatggaga--gagattccaaagcaactcaactcaagtccctaa |
43340528 |
T |
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