View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_16 (Length: 255)
Name: NF8749_low_16
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_16 |
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| [»] scaffold0048 (4 HSPs) |
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Alignment Details
Target: scaffold0048 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 48323 - 48102
Alignment:
| Q |
8 |
tgctgtagcatttccacacggtttt-tctgtgtaccggatcaagatcgctggtttgagattggacgtttacatttcaagctcattttcatacggtaacac |
106 |
Q |
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| T |
48323 |
tgctgtagcatttccacatggtttaatgtgtgtaccagatcaagactgttgatttgagatcagacgtttacatttcaaactcattttcattcggtaaaac |
48224 |
T |
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| Q |
107 |
aatctcatccgctgatttaagattgaactgcttagatctgttacattgtcctgttacatgctgtaactgcaggaaatccaatttgaaggaaaggcaaagg |
206 |
Q |
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| T |
48223 |
aatcttatccgccaatttaatatttgactgcttagatctgttacagtgtcctgttacatgctgtaactgtaggaaatccaattcgaaggaaaggcaaagg |
48124 |
T |
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| Q |
207 |
agataaatgtgaaactgtttct |
228 |
Q |
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| T |
48123 |
ggataaatgtgaaactgtttct |
48102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 84874 - 85098
Alignment:
| Q |
8 |
tgctgtagcatttccacacggtttttctgtgtaccggatcaagatcgctggtttgagattggacg----tttacatttcaagctcattttcatacggtaa |
103 |
Q |
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| T |
84874 |
tgctgtagcatttccacacggtttttctgtgaaccggatcaagaccgttgatttgagattggatgattaattacatttcaagctcatttttctgcagtaa |
84973 |
T |
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| Q |
104 |
cacaatctcatccgctgatttaagattgaactgcttagatctgttacattgtcctgttacatgctgtaactgcaggaaatccaatttgaaggaaaggcaa |
203 |
Q |
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| T |
84974 |
aacaatctcatccgccaatttaagatttgacctcttagatttgtgacagtatcctgttacttgttgtaactgcatgaaatccaattcgaaggaaaggcaa |
85073 |
T |
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| Q |
204 |
aggagataaatgtgaaactgtttct |
228 |
Q |
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| T |
85074 |
aggggataattgtgaaattgtttct |
85098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 60863 - 60734
Alignment:
| Q |
99 |
ggtaacacaatctcatccgctgatttaagattgaactgcttagatctgttacattgtcctgttacatgctgtaactgcaggaaatccaatttgaaggaaa |
198 |
Q |
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| T |
60863 |
ggtaaaacaatcacatccgccaatttaatatttgactgcttagatctgttacagtgtcttgttacatgctgtaactgcaggaaatccaatttgaaggaaa |
60764 |
T |
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| Q |
199 |
ggcaaaggagataaatgtgaaactgtttct |
228 |
Q |
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| T |
60763 |
ggcaaaggggataaatgtgaaactgtttct |
60734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 60977 - 60866
Alignment:
| Q |
8 |
tgctgtagcatttccacacggtttt-tctgtgtaccggatcaagatcgctggtttgagattggacgtttacatttcaagctcattttcatacggtaacac |
106 |
Q |
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| T |
60977 |
tgctgcagcatttccacacggtttaatgtgtttaccggatcaaaactattgatttgagatcagacgtttacatttcaaactcattttcattaggtaaaac |
60878 |
T |
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| Q |
107 |
aatctcatccgc |
118 |
Q |
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| T |
60877 |
aatctcatccgc |
60866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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