View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8749_low_3 (Length: 545)
Name: NF8749_low_3
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 34927850 - 34928144
Alignment:
| Q |
4 |
agtttggtgttgcattaacaaaaaactaaaccaacaaggatttgaagtgcttaatttgatgatgttatagaatctagaaatttatcatctcaatgtttaa |
103 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34927850 |
agttcggtggtgcattaacaaaaaactaaaccaacaaggatttgaagtgcttaatttgatgatgttatagaatctagaaatttatcatctcaatgtttaa |
34927949 |
T |
|
| Q |
104 |
tttttgaattcctctcttcagaattggactcactgacatccgtgcatgtactagtttagactttagagccatttttaatcataagtttaagagaaattca |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34927950 |
tttttgaattcctctcttcagaattggactcactgacatccgtgcatgtactagtttagactttagagccatttttaatcataagtttaagagaaattca |
34928049 |
T |
|
| Q |
204 |
aagtgtcagattcgatttttaccttgccaatttcattagattggttttgtttcttaaaaaataaattaggagaaatactaatatttatacaatca |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34928050 |
aagtgtcagattcgatttttaccttgccaatttcattagattggttttgtttcttaaaaaataaattaggagaaatactaatatttattcaatca |
34928144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 438 - 528
Target Start/End: Original strand, 34928284 - 34928374
Alignment:
| Q |
438 |
taagcaatagtatattcttacatgaattattcccttagactaagttggtcctggttttaaatgataaggctatgtgttgtgcatgatattt |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34928284 |
taagcaatagtatattcttacatgaattattcccttagactaagttggtcctggttttaaatgataaggctatgtgttgtgcatgatattt |
34928374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 393
Target Start/End: Original strand, 34928210 - 34928239
Alignment:
| Q |
364 |
taaagttgtctcaaaattgccattgttcat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34928210 |
taaagttgtctcaaaattgccattgttcat |
34928239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University