View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8749_low_31 (Length: 221)
Name: NF8749_low_31
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 4181578 - 4181772
Alignment:
| Q |
10 |
gaagcagagaaacaacactagccaaatgccacaaatcagttatgtaaatatgagcaacatgaagcaacaagaaaataagaacacnnnnnnnn--cagcaa |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4181578 |
gaagcacagaaacaacactagccaaatgccacaaatcagttatgtaaacatgagcaacatgaagcaacaagaaaataagaacacaaaaaaaaaacagcaa |
4181677 |
T |
|
| Q |
108 |
gaagtatccaacagcacaattgatatttgacataggtgaatgttggcaattttggaggacaatgactaataatctcgtatatgctatgtggttgt |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4181678 |
gaagtatccaacagcacaaatgatatttgacataggtgaatgttggcaattttggaggacaatgactcataatctcgtatatgctatgtggttgt |
4181772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 4098467 - 4098411
Alignment:
| Q |
12 |
agcagagaaacaacactagccaaatgccacaaatcagttatgtaaatatgagcaaca |
68 |
Q |
| |
|
|||| |||||||| |||||||||||||||| | ||||||||||| |||||||||| |
|
|
| T |
4098467 |
agcatagaaacaatactagccaaatgccacggagaagttatgtaaacatgagcaaca |
4098411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 6883929 - 6883848
Alignment:
| Q |
11 |
aagcagagaaacaacactagccaaatgccacaaatcagttatgtaaatatgagcaacatgaagcaacaagaaaataagaaca |
92 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| ||||||| |||| |||| ||||| ||| ||| | |||||||| |||| |
|
|
| T |
6883929 |
aagcacagacacaacactagccaaatgccacaaagcagttatataaacatgaacaacaagaaacaaaacgaaaataaaaaca |
6883848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 38581109 - 38581035
Alignment:
| Q |
11 |
aagcagagaaacaacactagccaaatgccacaaatcagttatgtaaatatgagcaacatgaagcaacaagaaaat |
85 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| ||||||| |||| |||| |||| ||| ||||| |||||| |
|
|
| T |
38581109 |
aagcacagacacaacactagccaaatgccacaaagcagttatataaacatgaacaacgagaaacaacacgaaaat |
38581035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University