View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_32 (Length: 214)
Name: NF8749_low_32
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 18526806 - 18526676
Alignment:
| Q |
16 |
gagatgaagtacaatgtggagtgaatttctattattcaactcaagatgatctgattacacttaattatttataacagtaactaatgaatgattaccaggc |
115 |
Q |
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| T |
18526806 |
gagatgaagtacaatgtggagtgaatttctattattcaactcaagatgatccgattacacttaattatttataacagtaactaatgaatgattaccaggc |
18526707 |
T |
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| Q |
116 |
aat-aacaatttttcatggctttgattttaa |
145 |
Q |
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| T |
18526706 |
aatcaacaattttttatggctttgattttaa |
18526676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 18526652 - 18526607
Alignment:
| Q |
149 |
ctgacatacatgattccatgaacctattcctagtactacagcaagt |
194 |
Q |
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| T |
18526652 |
ctgacatacatgattccatgaacctattcctagtactacagcaagt |
18526607 |
T |
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