View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_34 (Length: 211)
Name: NF8749_low_34
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 33484905 - 33484722
Alignment:
| Q |
18 |
agaaggaagttcaggaagcaaggcatgaaggctatcaaacatgttcctcattttctttctcctttctctttcagtcaaaatgtgcatttcatgatcaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33484905 |
agaaggaagttcaggaagcaaggcatgaaggctatcaaacatgttcctcattttctttctcctttctctttcagtcaaaatgtgcatttcatgatcaaaa |
33484806 |
T |
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| Q |
118 |
tcacgatactttctatcttctccttcatcagttgtaatgttattctcacttctaattacaaccccaccccgacttctctgcttc |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33484805 |
tcacgatactttctatcttctccttcatcagttgtaatgttattctcacttctaattacaaccccaccccgacttctcttcttc |
33484722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 33497420 - 33497242
Alignment:
| Q |
18 |
agaaggaagttcaggaagcaaggcatgaaggctatcaaacatgttcctcattttctttctcctttctctttcagtcaaaatgtgcatttcatgatcaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33497420 |
agaaggaagttcaggaagcaaggcatgaaggctatcgaacatgttcctcattttctttctcctttctctttcagtcaaaatgtgcatttcatgatcaaaa |
33497321 |
T |
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| Q |
118 |
tcacgatactttctatcttctccttcatcagttgtaatgttattctcacttctaattacaaccccaccccgacttctct |
196 |
Q |
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|||||||||||| |||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||| | |||||| |
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| T |
33497320 |
tcacgatactttttatctttttcttcaccagttgtaatattattctcacttctaattacaaccccaccccaatttctct |
33497242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 31819286 - 31819238
Alignment:
| Q |
43 |
tgaaggctatcaaacatgttcctcattttctttctcctttctctttcag |
91 |
Q |
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||||||||||| |||||| |||||||||| |||||||||||||| |||| |
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| T |
31819286 |
tgaaggctatctaacatgctcctcattttttttctcctttctctctcag |
31819238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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