View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_4 (Length: 483)
Name: NF8749_low_4
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Complemental strand, 15344066 - 15343612
Alignment:
| Q |
16 |
catgattggcctcagaatcagatgacaacagttcaaaagagttgtgcaaaagcgcagaatttccaatccctgtgttcccattatcaaactgaggtgttgt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15344066 |
catgattggcctcagaatcagatgacaacagttcaaaaaagttttgcaaaagcgcagaatttccaatccctgtgttcccattatcaaactgaggtgttgt |
15343967 |
T |
|
| Q |
116 |
atgtgcatttgtaactgctaatccacgagtggtttcattctcagctgtcagcagatcaacagagttgtgcagtagtgcagatttgttgatccttgcgttc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15343966 |
atgtgcatttgtaactgctaatccacgagtggtttcattctcaactgtcagcagatcaacagagttgtgcagtagtgcagatttgttgatccttgcgttc |
15343867 |
T |
|
| Q |
216 |
ccatttgcaaattcagttgttgtgtgtgcatttgtagaatagaaaaacttctctttttccaattgcacttgatgctcctctaaccctccttcagactcat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15343866 |
ccatttgcaaattcagttgttgtgtgtgcatttgtagaacagaaaaacttctccttttccaattgcacttgatgctcctctaacgctccttcagactcat |
15343767 |
T |
|
| Q |
316 |
gtttcttgtttttcatgttcttagtaccatcaatattcgacttagcatgctgagattgaaatttggtctgatgaatctctttaacatattgcgttttttc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15343766 |
gtttcttgtttttcatgttcttagtaccatcaatattcgacttagcatgctgagattgaaatttggtctgatgaatctctttaacatattgcgttttttc |
15343667 |
T |
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| Q |
416 |
ataattcagtcttttgcattgtagtatggtgtgacctagcaccttacagtgagaa |
470 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
15343666 |
ataattcagtcttttgcattgtagtatagtgtgacgtagcaccttacagtgagaa |
15343612 |
T |
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