View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_5 (Length: 469)
Name: NF8749_low_5
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 10389565 - 10390003
Alignment:
| Q |
18 |
tcaagcaatacaaattccttttgcacttattcctcttcttactttggtgtctaaagaagaggtcatggggacattcagaatagggcctatagtagaggta |
117 |
Q |
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| T |
10389565 |
tcaagcaatacaaattccttttgcacttattcctcttcttactttggtgtctaaagaagaggtcatggggacattcagaatagggcctatagtagaggta |
10389664 |
T |
|
| Q |
118 |
agttattaatctaaaatatagttagtttttatttgaaattcttatactttggtgtttaaaaaatcaaaggtaattaaataattttagacaaaactttgag |
217 |
Q |
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| T |
10389665 |
agttattaatctaaaatatagttagtttttatttgaaattcttatactttggtgtttaaaaaatcaaaggtaattaaataattttagacaaaactttgag |
10389764 |
T |
|
| Q |
218 |
ttctaaatgataaaaaattattcaagagtatgagtatatttaactttataaattttgtgatgcagagggtggcatggacagtggtggtacttgtgataat |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10389765 |
ttctaaatgatcaaaaattattcaagagtatgagtatatttaactttataaattttgtgatgcagagggtggcatggacagtggtggtacttgtgataat |
10389864 |
T |
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| Q |
318 |
gctttatggatatatgttattagatttcttcctctcagaagtgaagggactattgtttggatttttagtcttcctttgtgcagcagcatggatttcattt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10389865 |
gctttatggatatatgttattagatttcttcctctcagaagtgaagggactattgtttggatttttagtcttcctttgtgcaacagcatggatttcattt |
10389964 |
T |
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| Q |
418 |
attgcatttcttctaaaacatagtggtgctatttcttct |
456 |
Q |
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| T |
10389965 |
attgcatttcttctaaaacatagtggtgctatttcttct |
10390003 |
T |
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