View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_7 (Length: 434)
Name: NF8749_low_7
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 92 - 429
Target Start/End: Original strand, 5175891 - 5176228
Alignment:
| Q |
92 |
gttactgctggatctagcaccaatcttgacaagataatcatggcacgtgttcccttcatgctacatttgatgcaaatgaagactccaatatttgatcatt |
191 |
Q |
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| T |
5175891 |
gttactgctggatctagcaccaatcttgacaagataatcatggcacgtgttcccttcatgcaacatttgatgcaattgaagactccaatatttgatcatt |
5175990 |
T |
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| Q |
192 |
tattgacaaataacgactatctcacggtctaaatgttgtgtagtaacaccaacactttgaaacatttagagtgtgttttgagtcgatgtaacatgatttt |
291 |
Q |
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| T |
5175991 |
tattgacgaataacgactatctcacggcctaaatgttgtgtagtaacaccaacactttgaaacatttagagtgtgttttgagtcgatgtaacatgatttt |
5176090 |
T |
|
| Q |
292 |
acgtgaaccttctttccaacacatgtgaacgccatgcatcaagactacaatctcaacatgcagatgattgagacacaccaatatttttgtagtatcctca |
391 |
Q |
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| T |
5176091 |
acgtgaaccttctttccaacacatgtgaacgccatgtatcaagactacaatctcaacatgcagatgattgagacacaccaatatttttgtagtatcctca |
5176190 |
T |
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| Q |
392 |
ataaagtctctcatagtatctcgaattagaccaccaaa |
429 |
Q |
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| T |
5176191 |
ataaagtctctcatagtatctcgaattagaccaccaaa |
5176228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 43 - 429
Target Start/End: Original strand, 5180130 - 5180514
Alignment:
| Q |
43 |
tgagaagcaaacaaagctcattcgaaggatcagttataacaatgagctcgttactgctggatctagcaccaatcttgacaagataatcatggcacgtgtt |
142 |
Q |
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| T |
5180130 |
tgagaagcaaacgaagctcatttggaggatcaatcataacaattaacttgtt---gctggttctagcaccaatcttgacaagaaaatcatggcacatgtt |
5180226 |
T |
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| Q |
143 |
cccttcatgctacatttgatgcaaatgaagactccaatatttgatcatttattgacaaataacgactatctcacggtctaaatgttgtgtagtaacacca |
242 |
Q |
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| T |
5180227 |
cacttcatggaacgtttgatgcagttgaagactccaatatttgatcatatattgacgaataacgattatctcattgcttaaatgttgtgtagtaacacca |
5180326 |
T |
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| Q |
243 |
acactttgaaacatttagagtg--tgttttgagtcgatgtaacatgattttacgtgaaccttctttccaacacatgtgaacgccatgcatcaagactaca |
340 |
Q |
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||| || |||||| || ||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
5180327 |
acaattggaaacaattggagtgtatgtttctagtcaatgtaacatgattttacgcgaaccttctttccaacacatgcgaacgccatgcatcaaggctaca |
5180426 |
T |
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| Q |
341 |
atctcaacatgca-gatgattgagacacaccaatatttttgtagtatcctcaataaagtctctcatagtatctcgaattagaccaccaaa |
429 |
Q |
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|||||||| |||| ||||| |||| | ||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
5180427 |
atctcaacttgcaggatgactgag--aaaccaatatttttgcagtgtcctcaataatgtctctcatagtgtctcgaattagaccaccaaa |
5180514 |
T |
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