View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8749_low_9 (Length: 377)
Name: NF8749_low_9
Description: NF8749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8749_low_9 |
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| [»] scaffold0169 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 24 - 363
Target Start/End: Original strand, 4443056 - 4443408
Alignment:
| Q |
24 |
gtagtagtagttacaaaacacgattgaattaaaaagaaaataaaacaaatgcaatcttccaactaatcctaaccatgaccatcattgtaaatgtaaactt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4443056 |
gtagtagtagttacaaaacacgattgaattaaaaagaaaataaaacaaatgcaatcttccaactaatcctaaccatgaccatcattgtaaatgtaaactt |
4443155 |
T |
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| Q |
124 |
aatatatgaatgtgtatttgtattatatttcatcaaacttttttcaagnnnnnnntcagtacttggtacacaaggttcaatatt---------------- |
207 |
Q |
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| T |
4443156 |
aatatatgaatgtgtatttgtatt-----taatcaaacttttttcaagaaaaaaatcagtacttggtacacaaggttcaatattacagccaagatggctt |
4443250 |
T |
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| Q |
208 |
--tggctaagtgaaatagttcttttcctattgatttgaatttatctatttgtattttgaggagaacacaggaaagtcgttgaaatgtcgattttaacctt |
305 |
Q |
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| T |
4443251 |
gttggctaagtgaaatagttcttttcctattgatttgaatttatctatttgtattttgaggagaacacaagaaagtcgttgaaatgtcgattttaacctt |
4443350 |
T |
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| Q |
306 |
taaagattgactttcaaatcatgtttgtagtgtccactctcattatctatagcaagca |
363 |
Q |
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| T |
4443351 |
taaagattgactttcaaatcatgtttgtagtgtccactctcattatctatagcaagca |
4443408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 25918 - 26033
Alignment:
| Q |
24 |
gtagtagtagttacaaaacacgattgaattaaaaagaaaataaaacaaatgcaatcttccaactaatcctaaccatga-----ccatcattgtaaatgta |
118 |
Q |
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| T |
25918 |
gtagtagtagttacgaaacacgattgaattaaa--gaaaataaaacaaacgcaatcttccaactaatgctaaccaggagcaatgcaacattgtaaatgtg |
26015 |
T |
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| Q |
119 |
aacttaatatatgaatgt |
136 |
Q |
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| T |
26016 |
aacttaacatatgaatgt |
26033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 26105 - 26168
Alignment:
| Q |
207 |
ttggctaagtgaaatagttcttttcctattgatttgaatttatctatttgtattttgaggagaa |
270 |
Q |
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| T |
26105 |
ttggctaagtgaaatagttcttttcctaatgatttgaatttatctatttatattttgatgagaa |
26168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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