View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8750_high_2 (Length: 412)
Name: NF8750_high_2
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8750_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 193 - 401
Target Start/End: Complemental strand, 54984411 - 54984203
Alignment:
| Q |
193 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtagggagaaatctttggatacaaaatagcataatctttcaca |
292 |
Q |
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| T |
54984411 |
tttcaagaaattctgataagcatttgattaaattttgcattgatcaattggtcttccgtaaggagaaatctttggatacaaaatagcataatctttcaca |
54984312 |
T |
|
| Q |
293 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54984311 |
gttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataactactgtgagccttt |
54984212 |
T |
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| Q |
393 |
ccttctctg |
401 |
Q |
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|||| |||| |
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| T |
54984211 |
ccttttctg |
54984203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 54984586 - 54984473
Alignment:
| Q |
18 |
aaaaagtacataacaacttgcaccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggt |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54984586 |
aaaaagtacataacaacttgcgccaaaggaggagcatccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactcaacaaaaggt |
54984487 |
T |
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| Q |
118 |
accaccaacacgaa |
131 |
Q |
| |
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|||||||||||||| |
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| T |
54984486 |
accaccaacacgaa |
54984473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 51065490 - 51065545
Alignment:
| Q |
52 |
catccaagagaaaattcaaacaccatacaacataaacaccaataaaaacacgactca |
108 |
Q |
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| T |
51065490 |
catccaaaagaaaattcaaacaccatgcaatataaacactgat-aaaacacgactca |
51065545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 276 - 366
Target Start/End: Original strand, 31320337 - 31320427
Alignment:
| Q |
276 |
tagcataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcg |
366 |
Q |
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| T |
31320337 |
tagcataatcttttactggtttgtataatactggccttgactcgttcactagtttgtcaatcggttgaatctctttctctgaatttgggcg |
31320427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 396
Target Start/End: Original strand, 31326377 - 31326493
Alignment:
| Q |
280 |
ataatctttcacagttttgtataatactggccttgactcattcactagtttgtcaattggtttgacctctttctctgaatttgggcgacatgtcataact |
379 |
Q |
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||||||||| || | | ||||| ||| |||||||||||| ||||||||||||||||| |||| | ||||||||| |||| |||||| ||| |||| || |
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| T |
31326377 |
ataatcttttactggtctgtatgataatggccttgactcgttcactagtttgtcaatcggttgaatctctttctccgaatctgggcggcataacatagct |
31326476 |
T |
|
| Q |
380 |
actgtgagcctttcctt |
396 |
Q |
| |
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|||| ||||||| |||| |
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| T |
31326477 |
actgagagccttgcctt |
31326493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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