View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8750_low_1 (Length: 673)
Name: NF8750_low_1
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8750_low_1 |
 | |
|
| [»] scaffold0017 (2 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Original strand, 44611344 - 44611786
Alignment:
| Q |
14 |
aattatgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611344 |
aattatgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaag |
44611443 |
T |
|
| Q |
114 |
tgcaaagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611444 |
tgcaaagagagggagagacgtgcactcctcacgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagatt |
44611543 |
T |
|
| Q |
214 |
gctgcaaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611544 |
gctgcaaatggaagggagttcaatgcaacattcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaa |
44611643 |
T |
|
| Q |
314 |
tccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaactta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611644 |
tccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaactta |
44611743 |
T |
|
| Q |
414 |
agataccttgatctctcaaatagtggttttgatgggaagattc |
456 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44611744 |
agataccttgatctctcaaatagtggttttgatgggaagattc |
44611786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 451 - 658
Target Start/End: Original strand, 44612085 - 44612292
Alignment:
| Q |
451 |
agattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttc |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44612085 |
agattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttc |
44612184 |
T |
|
| Q |
551 |
attgttgcagtctcttatactcagttccaattccaatattagaatcaacaaccaaattgagtggctatcaaatctctcttctgtgagaattcttgacttg |
650 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44612185 |
attgttgcagtctcttttactcagttccaattccaatattagaatcaacaaccaaattgagtggctatcaaatctctcttctgtgagaattcttgacttg |
44612284 |
T |
|
| Q |
651 |
agtgatgt |
658 |
Q |
| |
|
|||||||| |
|
|
| T |
44612285 |
agtgatgt |
44612292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 302 - 654
Target Start/End: Original strand, 44144726 - 44145091
Alignment:
| Q |
302 |
tggtgaaatcaatccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctcc |
401 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||| ||||| |||| |||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44144726 |
tggtgaaatcaatccttcaataactgtgctgcaacatctaacacatctagacctaagttatttgaatactggtggtcaaatcccaaaatttattggctcc |
44144825 |
T |
|
| Q |
402 |
ttctgcaacttaagatacctt-gatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatcta |
500 |
Q |
| |
|
||| |||| ||| || ||||| ||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | |
|
|
| T |
44144826 |
ttcagcaagttacgacacctttgatctctcagttggtggttatgatgggaagattcctgctcaacttgggaatctctcacgattgcgacaccttgatttt |
44144925 |
T |
|
| Q |
501 |
agtgacaatgaactcactggagaaatccctttccaacttggaaatctttcattgttgcagtctcttatactcagttccaattccaatattagaatcaaca |
600 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||| |||||| ||| |||||||||||| |
|
|
| T |
44144926 |
agctacaatgaactcattggagaaatccctttccaactcggaaatctttcattattgcagtctcttatactctgttacaattctaatcttagaatcaaca |
44145025 |
T |
|
| Q |
601 |
accaaa------------ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtg |
654 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
44145026 |
accaaattcaaggaaatgttgagtggctgtcaaatctctcttttctgagaattcttgacttgagtg |
44145091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 73 - 479
Target Start/End: Original strand, 35898695 - 35899101
Alignment:
| Q |
73 |
ttgttgggttcaacttggcaacaaataatggaaacacgaagtgcaaagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagta |
172 |
Q |
| |
|
||||||||||||||| |||| | |||||||| | || || ||||||||||||||||||| ||| |||||| || ||||||| ||||||||| ||||| |
|
|
| T |
35898695 |
ttgttgggttcaactcagcaatagataatggagataccaactgcaaagagagggagagacatgctctcctcggtttcaaacaaggccttcaagacgagta |
35898794 |
T |
|
| Q |
173 |
tggtatgttgtccacatggaaggagggttcagatgcagattgctgcaaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgat |
272 |
Q |
| |
|
||||||||||| |||||||| || || || |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
35898795 |
cggtatgttgtctacatggaatgatagtccaaatgcagattgctgcaaatggaaaggagttcaatgcaacaaccaaactggttatattcaaagtcttgat |
35898894 |
T |
|
| Q |
273 |
ctgcatggctcgtatcgacgccgattgtttggtgaaatcaatccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatacta |
372 |
Q |
| |
|
||||||| || | |||| ||| || ||||||| |||| ||||||||| ||||||||||| |||||| || |||| ||| | ||||||||| |
|
|
| T |
35898895 |
ttgcatggttcaaaaacacgctatttgagaggcaaaatcaaccctttaataactgaattgcaacatcttacatatttagaccttggttttttgaatacta |
35898994 |
T |
|
| Q |
373 |
gtggtcaaatcccaaaatttattggctccttctgcaacttaagataccttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaa |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||| ||| |||| |
|
|
| T |
35898995 |
gtggtcaaatcccaaaatttattggctccttcagcaacttgcgatacattgatctctcaaatagtggtttcgatgggaagattcctgctcagcttaggaa |
35899094 |
T |
|
| Q |
473 |
tctctca |
479 |
Q |
| |
|
||||||| |
|
|
| T |
35899095 |
tctctca |
35899101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 18 - 521
Target Start/End: Complemental strand, 44786237 - 44785738
Alignment:
| Q |
18 |
atgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaagtgca |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||| | || ||||| ||||||||||| || | | || ||| |||| ||||||| |
|
|
| T |
44786237 |
atgatgagaaactataatattattacattacatgcattgttggtgttctccttcattgctgggttcaactcaataaaagagaagggagacacaaagtgca |
44786138 |
T |
|
| Q |
118 |
aagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagattgctg |
217 |
Q |
| |
|
||| ||| ||||||| |||||||||| || ||||||| | |||||||||| ||||| ||||||||||||| ||| || ||| || |||||||||| || |
|
|
| T |
44786137 |
aagtgagtgagagacaagcactcctcacattcaaacaaggcattcaagatgattatggcatgttgtccacatcgaaagacggtccaaatgcagattgttg |
44786038 |
T |
|
| Q |
218 |
caaatggaagggagttcaatgcaacaatcaaactggttat--gttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaatc |
315 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||| ||| ||||| | |||||||||| || | ||| ||| ||||| |||||||| |
|
|
| T |
44786037 |
caaatgggaaggagttcaatgcaacaaccaaactggatatatgttcaga------atctgcatggttcagaaacacgttatttgagtggtgtaatcaatc |
44785944 |
T |
|
| Q |
316 |
cttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaag |
415 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||| |||||||| || ||| ||||| || |||||| |||||||||||||| |||||| |||||||| | |
|
|
| T |
44785943 |
cttcaataactgagctgcgacatctaaaatatctagacctcagtcatttgattactaatgatcaaattccaaaatttattggatccttcagcaacttacg |
44785844 |
T |
|
| Q |
416 |
ataccttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactc |
515 |
Q |
| |
|
||||||||| |||||| | |||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
44785843 |
ataccttgacctctcagttggtggttacggtggaaagattcctactcaacttgggaatctctcacaattgcgacaccttgatctcagcaacaatggactc |
44785744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 72 - 566
Target Start/End: Complemental strand, 11545182 - 11544675
Alignment:
| Q |
72 |
attgttgggttcaacttggcaacaaataatggaaacacgaagtgcaaagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagt |
171 |
Q |
| |
|
|||||||||||||||| |||| | |||||| | | |||||||| |||||||||||||| ||||||||||| || |||||| ||||| ||||| ||| |
|
|
| T |
11545182 |
attgttgggttcaactcaacaacggagaatggagaaatgaagtgcacagagagggagagacatgcactcctcacattcaaacaaaaccttgaagataagt |
11545083 |
T |
|
| Q |
172 |
atggtatgttgtccacatggaaggagggttcagatgcagattgctgcaaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttga |
271 |
Q |
| |
|
||| |||||||| |||||||| | | | | ||||||| || |||||||| ||||||| |||||||| ||||| ||||||||||||||||| || |
|
|
| T |
11545082 |
atgacatgttgtcgacatggaacaacaatcaaaacccagattgttgtaaatggaaaggagttcgttgcaacaaccaaacaggttatgttcaaagtctcga |
11544983 |
T |
|
| Q |
272 |
tctgcatggctcgtatcgacgccgattgtttggtgaaa---------tcaatccttcaataactgagttgcaacatctaacatatctaaacctcagttat |
362 |
Q |
| |
|
| ||||||| ||| | ||| ||| |||||||| | |||||||||||||||||||| |||||||||| |||| || |||||||| | |
|
|
| T |
11544982 |
tttgcatggttcggaaacacgttatttgggtggtgaaaggactacaataaatccttcaataactgagttacaacatctaaaatatttagacctcagtagt |
11544883 |
T |
|
| Q |
363 |
ctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagataccttgatctctcaaatagtggttttgatgggaag----attcct |
458 |
Q |
| |
|
||| || | ||||||||||||||||||||||||||| ||| ||| |||||||| |||||||||||||| || | ||| |||| |||||| |
|
|
| T |
11544882 |
atgattattttcactcaaatcccaaaatttattggctccttaaccaagttatgataccttaatctctcaaatagttattatcatgcgaagattcattcct |
11544783 |
T |
|
| Q |
459 |
tctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttcattgttgc |
558 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||||||||||||| || |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
11544782 |
tctcaacttggcaatctctcacagttgagacaccttgatcttagctacaatgaactcattggagaaattcctttccaactcggaaatctttcattgttgc |
11544683 |
T |
|
| Q |
559 |
agtctctt |
566 |
Q |
| |
|
|||||||| |
|
|
| T |
11544682 |
agtctctt |
11544675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 44144506 - 44144684
Alignment:
| Q |
18 |
atgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaagtgca |
117 |
Q |
| |
|
|||||||||||||||||||||| | ||||| |||||||||||||||| | |||||||| | ||||||||| |||||||| |||| | |||| ||||||| |
|
|
| T |
44144506 |
atgatgagaaactataatattattgcattacatgcattgttggtgttatcctccattgataggttcaactcagcaacaaagaatgtagacacaaagtgca |
44144605 |
T |
|
| Q |
118 |
aagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaagga |
196 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||| |||||||||| ||||| || | || ||||||||||| |
|
|
| T |
44144606 |
aagagagggagagacacgcactcctcactttcaaacaaggtgttcaagatgactatggcgtgctttcaacatggaagga |
44144684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 652
Target Start/End: Original strand, 173456 - 174090
Alignment:
| Q |
18 |
atgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaagtgca |
117 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||| |||||||||||| || |||||||||||||||||| ||||||| |||||| ||| |||||||| |
|
|
| T |
173456 |
atgatgagaaactataatattattacattacatgcactgttggtgttgtccttcattgttgggttcaacttaacaacaaagaatggagacatgaagtgca |
173555 |
T |
|
| Q |
118 |
aagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagattgctg |
217 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| ||||||| |||||||||||| ||||| ||||||||||||||||||| ||| | ||| ||||||||| |
|
|
| T |
173556 |
aagagagagagagacgcgcactcctcacgttcaaacaaggccttcaagatgattatggcatgttgtccacatggaagggcggtcaaaatgaagattgctg |
173655 |
T |
|
| Q |
218 |
caaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaatcct |
317 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| | ||| |||||||||||||||| |
|
|
| T |
173656 |
caaatggaagggagttcaatgcaacatcgaaactggttatgttcaaagtcttgatctgcatggctcggaaacacgtcatttgagtggtgaaatcaatcct |
173755 |
T |
|
| Q |
318 |
tcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagat |
417 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| || ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||| || | |
|
|
| T |
173756 |
tcaataactgagttacaaaatctaacatatttagacctcagttatttgaatactagtagtcaaatctcaaaatttattggctccttcagcaagttgcggc |
173855 |
T |
|
| Q |
418 |
accttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcac |
517 |
Q |
| |
|
|||||||||| |||||| || || |||||||||| |||||| | ||||||| ||||| ||||||||| || |||||||||| || |||||||||||| |
|
|
| T |
173856 |
accttgatctgtcaaatggtcattatgatgggaaggttccttttgaacttggaaatctatcacaattgtgataccttgatcttagctacaatgaactcat |
173955 |
T |
|
| Q |
518 |
tggagaaatccctttccaacttggaaatctttcattgttgcagtctcttatactcagttccaattccaatattagaatcaacaaccaaattgagtggcta |
617 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
173956 |
tggagaaatccctttccaactcggaaatctttcattgttgcagtctctttttctcagttccaattccaatcttagaatcaacaaccaaattgtgtggcta |
174055 |
T |
|
| Q |
618 |
tcaaatctctcttctgtgagaattcttgacttgag |
652 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |
|
|
| T |
174056 |
acaaatctctcttctttgaggattcttgacttgag |
174090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 18 - 606
Target Start/End: Original strand, 168447 - 169035
Alignment:
| Q |
18 |
atgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaagtgca |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||| |||||| |
|
|
| T |
168447 |
atgatgagaaactataatattgctacattacatgcattgttagtgttgttctccattgttgggttcaactcagcaacaaagaatggagacacacagtgca |
168546 |
T |
|
| Q |
118 |
aagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagattgctg |
217 |
Q |
| |
|
|||| |||||||||| | ||||| ||| || ||||||| |||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
168547 |
aagaaagggagagacattcactcgtcactttgaaacaaggccttcaagatgactatggtatgttgtccacatggaaggaggatccaaatgcagattgctg |
168646 |
T |
|
| Q |
218 |
caaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaatcct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||| | ||| | ||| |||||||||||||||| |
|
|
| T |
168647 |
caaatggaagggagttcaatgcaacaatcaaaccggttatgttgaaaagcttgatctgcatggttcggaaacacgttgtttgagtggtgaaatcaatcct |
168746 |
T |
|
| Q |
318 |
tcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagat |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||||||||| ||| || |||| ||| || |
|
|
| T |
168747 |
tcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtcaaatcccaaaatttattggatccatcagcaaattacaat |
168846 |
T |
|
| Q |
418 |
accttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcac |
517 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| || ||||| || | |
|
|
| T |
168847 |
accttgatctctcatttggtggttatgatgggaagattcctattcaacttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaa |
168946 |
T |
|
| Q |
518 |
tggagaaatccctttccaacttggaaatctttcattgttgcagtctcttatactcagttccaattccaatattagaatcaacaaccaaa |
606 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| |||||| || |||||||||||| ||||| |
|
|
| T |
168947 |
tggagaaatccctttccaactcggaaatctttcattgttgcggtctcttgtgctcagttacaattctgatcttagaatcaacagccaaa |
169035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 297; Significance: 1e-166; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 18 - 606
Target Start/End: Complemental strand, 30345 - 29757
Alignment:
| Q |
18 |
atgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaagtgca |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| |||||||| |||||| |||| |||||| |
|
|
| T |
30345 |
atgatgagaaactataatattgctacattacatgcattgttagtgttgttctccattgttgggttcaactcagcaacaaagaatggagacacacagtgca |
30246 |
T |
|
| Q |
118 |
aagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagattgctg |
217 |
Q |
| |
|
|||| |||||||||| | ||||| ||| || ||||||| |||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
30245 |
aagaaagggagagacattcactcgtcactttgaaacaaggccttcaagatgactatggtatgttgtccacatggaaggaggatccaaatgcagattgctg |
30146 |
T |
|
| Q |
218 |
caaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaatcct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||| | ||| | ||| |||||||||||||||| |
|
|
| T |
30145 |
caaatggaagggagttcaatgcaacaatcaaaccggttatgttgaaaagcttgatctgcatggttcggaaacacgttgtttgagtggtgaaatcaatcct |
30046 |
T |
|
| Q |
318 |
tcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagat |
417 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| ||| ||||||| |||||||||||||||||||||||||| ||| || |||| ||| || |
|
|
| T |
30045 |
tcaataactgagttgcaacatctaaaatatcttgacctcagatatttgaataccagtggtcaaatcccaaaatttattggatccatcagcaaattacaat |
29946 |
T |
|
| Q |
418 |
accttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcac |
517 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| || ||||| || | |
|
|
| T |
29945 |
accttgatctctcatttggtggttatgatgggaagattcctattcaacttgggaatctatcacaattgcgacatcttgatcttagcaggaatgatctgaa |
29846 |
T |
|
| Q |
518 |
tggagaaatccctttccaacttggaaatctttcattgttgcagtctcttatactcagttccaattccaatattagaatcaacaaccaaa |
606 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||| |||||| || |||||||||||| ||||| |
|
|
| T |
29845 |
tggagaaatccctttccaactcggaaatctttcattgttgcggtctcttgtgctcagttacaattctgatcttagaatcaacagccaaa |
29757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 658
Target Start/End: Complemental strand, 29229070 - 29228426
Alignment:
| Q |
18 |
atgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaagtgca |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||| ||||||| || |||||||||||||||| ||||||||||||||| | || ||||||| |
|
|
| T |
29229070 |
atgatgagaaactataatattactacatttcatgcattgttagtgttgtcctgcattgttgggttcaacacagcaacaaataatggagatacaaagtgca |
29228971 |
T |
|
| Q |
118 |
aagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagattgctg |
217 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| ||||||| |||| |||||||| ||| ||||||| ||||||||| || ||| || ||||||||| || |
|
|
| T |
29228970 |
aagagagggagagacaagcactgctcaggttcaaacaaggccttaaagatgagaatgtcatgttgttcacatggaaagacggtccaactgcagattgttg |
29228871 |
T |
|
| Q |
218 |
caaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaatcct |
317 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||||||||||||||||||| | ||| | | | ||| ||||||||| ||| || |
|
|
| T |
29228870 |
caaatggga--------aatgcaacaaccaaactggttatgttcaaagtcttgatctgcatcgttcggaaacaaactatttgagtggtgaaataaattct |
29228779 |
T |
|
| Q |
318 |
tcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagat |
417 |
Q |
| |
|
||| |||||||| |||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
29228778 |
tcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaatttattggctccttcagcaagttacaat |
29228679 |
T |
|
| Q |
418 |
accttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcac |
517 |
Q |
| |
|
|||| ||||||||| || || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
29228678 |
acctcaatctctcaacaggtcattatgatgggaagattccttctcaacttggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcat |
29228579 |
T |
|
| Q |
518 |
tggagaaatccctttccaacttggaaatctttcattgttgcagtctcttatactcagttccaattccaatattagaatcaacaaccaaa----------- |
606 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||| |||||||| ||||| | |||||| ||| ||||||| ||||| |||| |
|
|
| T |
29228578 |
tggagcaatccctttccaactcggaaatctttcatcgttggagtctcttgtactccatcacaattctaatcttagaataaacaatcaaagtcatggcaat |
29228479 |
T |
|
| Q |
607 |
-ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgt |
658 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||| |||| ||||| |
|
|
| T |
29228478 |
gttgagtggctataaaatctctcttctttgagaaatcttgacctgagcgatgt |
29228426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 658
Target Start/End: Complemental strand, 29342369 - 29341725
Alignment:
| Q |
18 |
atgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaagtgca |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||| ||||||| || |||||||||||||||| ||||||||||||||| | || ||||||| |
|
|
| T |
29342369 |
atgatgagaaactataatattactacatttcatgcattgttagtgttgtcctgcattgttgggttcaacacagcaacaaataatggagatacaaagtgca |
29342270 |
T |
|
| Q |
118 |
aagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagattgctg |
217 |
Q |
| |
|
||||||||||||||| ||||| |||| ||| ||||||| |||| |||||||| ||| ||||||| ||||||||| || ||| || ||||||||| || |
|
|
| T |
29342269 |
aagagagggagagacaagcactgctcaggttcaaacaaggccttaaagatgagaatgtcatgttgttcacatggaaagacggtccaactgcagattgttg |
29342170 |
T |
|
| Q |
218 |
caaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaatcct |
317 |
Q |
| |
|
||||||| | |||||||||| ||||||||||||||||||||||||||||||||| | ||| | | | ||| ||||||||| ||| || |
|
|
| T |
29342169 |
caaatggga--------aatgcaacaaccaaactggttatgttcaaagtcttgatctgcatcgttcggaaacaaactatttgagtggtgaaataaattct |
29342078 |
T |
|
| Q |
318 |
tcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagat |
417 |
Q |
| |
|
||| |||||||| |||||||||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
29342077 |
tcactaactgagctgcaacatctaaaatatctagacctcagttatttgcatactagtggtcaaatcccaaaatttattggctccttcagcaagttacaat |
29341978 |
T |
|
| Q |
418 |
accttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcac |
517 |
Q |
| |
|
|||| ||||||||| || || ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||| |
|
|
| T |
29341977 |
acctcaatctctcaacaggtcattatgatgggaagattccttctcaacttggaaatctctcacaattgcaacaccttgatcttagcaacaatgaactcat |
29341878 |
T |
|
| Q |
518 |
tggagaaatccctttccaacttggaaatctttcattgttgcagtctcttatactcagttccaattccaatattagaatcaacaaccaaa----------- |
606 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||| |||||||| ||||| | |||||| ||| ||||||| ||||| |||| |
|
|
| T |
29341877 |
tggagcaatccctttccaactcggaaatctttcatcgttggagtctcttgtactccatcacaattctaatcttagaataaacaatcaaagtcatggcaat |
29341778 |
T |
|
| Q |
607 |
-ttgagtggctatcaaatctctcttctgtgagaattcttgacttgagtgatgt |
658 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| ||||||| |||| ||||| |
|
|
| T |
29341777 |
gttgagtggctataaaatctctcttctttgagaaatcttgacctgagcgatgt |
29341725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 608
Target Start/End: Original strand, 8341530 - 8342114
Alignment:
| Q |
18 |
atgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaagtgca |
117 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| |||||||||||||||||| || ||||| ||||||||||| || || |||||| | || ||||||| |
|
|
| T |
8341530 |
atgatgggaaactatactattattacattccatgcattgttggtgttgtccttcattgctgggttcaactcaaaaataattaatggcgatacaaagtgca |
8341629 |
T |
|
| Q |
118 |
aagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagattgctg |
217 |
Q |
| |
|
||||||||||||||| |||||||||| ||| ||||||| | ||| |||||| ||||| ||||||||| |||||||||| ||| || |||||||||||| |
|
|
| T |
8341630 |
aagagagggagagacacgcactcctcacgttcaaacaaggcgttcgagatgattatggcatgttgtccgcatggaaggacggtccaactgcagattgctg |
8341729 |
T |
|
| Q |
218 |
caaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaatcct |
317 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| ||||||||| ||| |||||||| || || || ||| |||||||||||||||| |
|
|
| T |
8341730 |
caaatggaaaggaattcaatgcaacaatcaaaccggttatgttgaaaagcttgatctacaccattcacattat------ttgagtggtgaaatcaatcct |
8341823 |
T |
|
| Q |
318 |
tcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaacttaagat |
417 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| || ||| |||||||| ||| |
|
|
| T |
8341824 |
tcaataactgagttgtaacatctaacatatcttgacctcagttatttgaatactagtggtcaaattccaaaatttattggatcgttcagcaacttacgat |
8341923 |
T |
|
| Q |
418 |
accttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcac |
517 |
Q |
| |
|
|||||||||||||||| |||||| ||| || ||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||| ||||| || |
|
|
| T |
8341924 |
accttgatctctcaaacggtggttatgagggaaagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagtcttaatgatcttgt |
8342023 |
T |
|
| Q |
518 |
tggagaaatccctttccaacttggaaatctttcattgttgcagtctcttatactcagttccaattccaatattagaatcaacaaccaaatt |
608 |
Q |
| |
|
||| ||||||||||||||| ||||||||||| || ||||| ||||| || || ||| |||||| || ||||||| | |||||||||| |
|
|
| T |
8342024 |
tggtacaatccctttccaactcggaaatctttcgttattgcaatctctgatgcttggttacaattctgatcttagaatgaccaaccaaatt |
8342114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 547
Target Start/End: Original strand, 26727125 - 26727649
Alignment:
| Q |
14 |
aattatgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaag |
113 |
Q |
| |
|
|||||||||||||||||||| |||| || ||| |||||||||||||||||| ||||||||||||||||||| ||| || || ||| ||| |||| |
|
|
| T |
26727125 |
aattatgatgagaaactatattattcttatattctatgcattgttggtgttgtcttccattgttgggttcaactcaacaatgaagaacggagacaagaag |
26727224 |
T |
|
| Q |
114 |
tgcaaagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagatt |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||| |||||||||||||||||| || ||||||||||||||||| | | | ||||||||| |
|
|
| T |
26727225 |
tgcaaagagagggagagacatgcactcctcacattcaaacaaggccttcaagatgagtatggcattttgtccacatggaaggatgatcaaaatgcagatt |
26727324 |
T |
|
| Q |
214 |
gctgcaaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgtatcgacgccgattgtttggtgaaatcaa |
313 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||| |||||||||||||| |||||| ||||||| | |||| || | |||||||||| |
|
|
| T |
26727325 |
gctgcaaatggatgggagtcttatgcaacaacgaaacaggttatgttcaaagacttgatttgcatggtttgtat---------ttaaattgtgaaatcaa |
26727415 |
T |
|
| Q |
314 |
tccttcaataactgagttgcaacatctaacatatctaaacctcagttatctgaatactagtggtcaaatcccaaaatttattggctccttctgcaactta |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||| ||| | ||| ||||| |||||||| ||||||||||||||| ||| ||| |
|
|
| T |
26727416 |
tccttcaataactgagttgcaacatctaacatatctagaccttagttcattgatgattagaggtcatatcccaaattttattggctccttcatcaattta |
26727515 |
T |
|
| Q |
414 |
agataccttgatctctcaaatagtggttttgatgggaagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaac |
513 |
Q |
| |
|
|||||||| ||||||||||| |||| ||| ||||||||||||||||||||| || |||||||| |||| |||||||||||| || ||||||||| |
|
|
| T |
26727516 |
cgataccttaatctctcaaatgccttttttaatgagaagattccttctcaacttggaaaactctcacagttgcaacaccttgatctcagccacaatgaac |
26727615 |
T |
|
| Q |
514 |
tcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
||| ||||| ||||||||| ||||| || ||||| |
|
|
| T |
26727616 |
tcattggaggaatcccttttcaactagggaatct |
26727649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 450 - 555
Target Start/End: Original strand, 8333043 - 8333148
Alignment:
| Q |
450 |
aagattccttctcaacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatcttt |
549 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||| |||| || ||||| || |||| |||||||||||||||| | |||||||| |
|
|
| T |
8333043 |
aagattcctactcaacttgggaatctctcacaattgcaacaccttaatctcagacttaatgatcttgttggaaaaatccctttccaactcgaaaatcttt |
8333142 |
T |
|
| Q |
550 |
cattgt |
555 |
Q |
| |
|
|||||| |
|
|
| T |
8333143 |
cattgt |
8333148 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 29508513 - 29508242
Alignment:
| Q |
14 |
aattatgatgagaaactataatattaatacattaaatgcattgttggtgttgttctccattgttgggttcaacttggcaacaaataatggaaacacgaag |
113 |
Q |
| |
|
|||||||||||||||||||| ||| || || |||||||||| ||||| |||| ||||||||||||||||| |||| | |||| | | |||| |
|
|
| T |
29508513 |
aattatgatgagaaactatatgattcttatgttccatgcattgtttgtgttattcttcattgttgggttcaactctgcaatggagaatgatgaaatgaag |
29508414 |
T |
|
| Q |
114 |
tgcaaagagagggagagacgtgcactcctcatgtttaaacaagaccttcaagatgagtatggtatgttgtccacatggaaggagggttcagatgcagatt |
213 |
Q |
| |
|
|| |||||| ||||||| ||||||||||| || ||| ||| |||||||||||||||||| |||||||||||||||||||| | || ||| ||||| |
|
|
| T |
29508413 |
tgtgaagagaaggagagaaatgcactcctcaaattcaaagaaggccttcaagatgagtatggcatgttgtccacatggaaggacgacccaaatgaagatt |
29508314 |
T |
|
| Q |
214 |
gctgcaaatggaagggagttcaatgcaacaatcaaactggttatgttcaaagtcttgatctgcatggctcgt |
285 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
29508313 |
gctgcaaatggaagggagttcgatgcaacaatcaaacaggttatgttcaaagacttgatctgcatggttcgt |
29508242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 29507696 - 29507611
Alignment:
| Q |
462 |
caacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| || || |||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29507696 |
caacttggaaatctctcacaattgcaacaccttgatctcagcgaaaatgaactcattggagcaattcccttccaacttggaaatct |
29507611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 29507840 - 29507755
Alignment:
| Q |
462 |
caacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||| || |||||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29507840 |
caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct |
29507755 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 29507912 - 29507827
Alignment:
| Q |
462 |
caacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| | || |||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29507912 |
caacttggaaatctctcacaattgcaacaccttgatctcggcgaaaatgaactcattggagcaattcccttccaacttggaaatct |
29507827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 29508056 - 29507971
Alignment:
| Q |
462 |
caacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
|||||||| |||||||||||||||| ||| |||||||| || |||||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29508056 |
caacttggaaatctctcacaattgcaacatcttgatctcagctacaatgaactcattggaggaattcccttccaacttggaaatct |
29507971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 29508128 - 29508043
Alignment:
| Q |
462 |
caacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| | || |||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29508128 |
caacttggaaatctctcacaattgcaacaccttgatctcggcgaaaatgaactcattggagcaattcccttccaacttggaaatct |
29508043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 556
Target Start/End: Complemental strand, 29507624 - 29507530
Alignment:
| Q |
462 |
caacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatctttcattgtt |
556 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||||| || |||||||||| | ||||| ||||||||| ||||| ||||||||||||||| |
|
|
| T |
29507624 |
caacttggaaatctctcacaattacaacaccttgatctcagctacaatgaactaattggagcaatccctttacaactccaaaatctttcattgtt |
29507530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 465 - 547
Target Start/End: Complemental strand, 29508197 - 29508115
Alignment:
| Q |
465 |
cttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||| || | |||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29508197 |
cttggaaatctctcacaattgcaacaccttgatctcagaggtaatgaactcattggagcaattcccttccaacttggaaatct |
29508115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 29507768 - 29507683
Alignment:
| Q |
462 |
caacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| || |||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29507768 |
caacttggaaatctctcacaattgcaacaccttgatctcagcagaaatgaactcattggagcaattcccttccaacttggaaatct |
29507683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 462 - 547
Target Start/End: Complemental strand, 29507984 - 29507899
Alignment:
| Q |
462 |
caacttgggaatctctcacaattgcgacaccttgatctaagtgacaatgaactcactggagaaatccctttccaacttggaaatct |
547 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| | | |||||||||| ||||| ||| || ||||||||||||||||| |
|
|
| T |
29507984 |
caacttggaaatctctcacaattgcaacaccttgatctcggcggaaatgaactcattggagcaattcccttccaacttggaaatct |
29507899 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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