View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8750_low_11 (Length: 243)

Name: NF8750_low_11
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8750_low_11
NF8750_low_11
[»] chr7 (18 HSPs)
chr7 (1-227)||(9765217-9765443)
chr7 (53-177)||(23107463-23107584)
chr7 (27-177)||(36222934-36223083)
chr7 (1-95)||(3862495-3862589)
chr7 (92-174)||(17601278-17601362)
chr7 (1-103)||(6966691-6966793)
chr7 (1-103)||(17863694-17863796)
chr7 (1-103)||(17866953-17867055)
chr7 (1-124)||(23313801-23313925)
chr7 (27-103)||(35773157-35773233)
chr7 (1-103)||(24782949-24783051)
chr7 (1-89)||(36843538-36843625)
chr7 (1-71)||(11279068-11279138)
chr7 (21-71)||(23760228-23760278)
chr7 (1-71)||(46846909-46846979)
chr7 (6-71)||(294440-294505)
chr7 (91-126)||(5796203-5796238)
chr7 (27-71)||(33312570-33312614)
[»] chr6 (15 HSPs)
chr6 (3-205)||(20527764-20527964)
chr6 (1-103)||(1838017-1838119)
chr6 (1-103)||(15534632-15534734)
chr6 (1-103)||(19665264-19665366)
chr6 (3-103)||(15537827-15537927)
chr6 (1-103)||(32704853-32704955)
chr6 (1-103)||(14790162-14790264)
chr6 (1-71)||(32426944-32427014)
chr6 (1-82)||(16883241-16883322)
chr6 (1-71)||(14795222-14795292)
chr6 (1-103)||(7770000-7770102)
chr6 (21-71)||(13017809-13017859)
chr6 (56-124)||(12984042-12984110)
chr6 (27-71)||(22221300-22221343)
chr6 (27-71)||(22247135-22247178)
[»] chr1 (11 HSPs)
chr1 (1-177)||(34065811-34065990)
chr1 (1-103)||(1936171-1936273)
chr1 (100-177)||(41159325-41159402)
chr1 (1-103)||(13495531-13495633)
chr1 (1-103)||(10759665-10759767)
chr1 (1-103)||(27282707-27282809)
chr1 (22-100)||(16190797-16190875)
chr1 (100-137)||(2734357-2734394)
chr1 (56-124)||(49147624-49147692)
chr1 (1-103)||(13492806-13492908)
chr1 (22-71)||(32506474-32506523)
[»] chr3 (7 HSPs)
chr3 (92-217)||(19868527-19868653)
chr3 (86-177)||(25491789-25491880)
chr3 (99-177)||(11270642-11270725)
chr3 (21-89)||(13979048-13979116)
chr3 (44-103)||(31878313-31878372)
chr3 (21-71)||(11139188-11139238)
chr3 (21-71)||(22626932-22626982)
[»] chr8 (8 HSPs)
chr8 (1-103)||(12575899-12576001)
chr8 (67-177)||(44007779-44007892)
chr8 (1-83)||(13096594-13096676)
chr8 (92-177)||(14627036-14627123)
chr8 (96-132)||(1743981-1744017)
chr8 (85-125)||(29613587-29613627)
chr8 (96-132)||(1655261-1655297)
chr8 (52-84)||(41779317-41779349)
[»] chr2 (6 HSPs)
chr2 (21-95)||(32576305-32576379)
chr2 (21-71)||(40017553-40017603)
chr2 (25-71)||(13709647-13709693)
chr2 (21-71)||(31527965-31528015)
chr2 (1-71)||(36326500-36326570)
chr2 (16-71)||(31626123-31626178)
[»] chr4 (5 HSPs)
chr4 (2-83)||(26060151-26060232)
chr4 (1-103)||(647803-647905)
chr4 (1-103)||(26063293-26063395)
chr4 (1-83)||(2541449-2541530)
chr4 (1-103)||(651075-651178)
[»] chr5 (7 HSPs)
chr5 (1-103)||(14617028-14617130)
chr5 (1-103)||(22159287-22159389)
chr5 (1-103)||(34405392-34405494)
chr5 (21-71)||(15532820-15532870)
chr5 (21-71)||(15543002-15543052)
chr5 (21-71)||(33574664-33574714)
chr5 (1-62)||(11989417-11989478)
[»] scaffold0567 (1 HSPs)
scaffold0567 (5-84)||(6413-6492)
[»] scaffold0665 (1 HSPs)
scaffold0665 (1-71)||(244-314)
[»] scaffold0500 (1 HSPs)
scaffold0500 (21-71)||(2267-2317)
[»] scaffold0063 (1 HSPs)
scaffold0063 (21-71)||(7612-7662)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 9765443 - 9765217
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9765443 actagacttttattcatattcaaagaagttcaacaaattagggttctcataggattacatcatattcatctaagtctcaaccataaagagtttagctact 9765344  T
Q  101 catgttcatagaaataaacaacataaaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaatttattctcgattgatgttattgttg 200  Q
    ||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9765343 catattcatagaaataaacaacataaaaagaaaacaaagccgagagtttcctagttgccgacgttgctcctgaatttattctcgattgatgttgttgttg 9765244  T
Q  201 tgcataccgtagctgctctcttcaatc 227  Q
    |||||||||||||||||||||||||||    
T  9765243 tgcataccgtagctgctctcttcaatc 9765217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 177
Target Start/End: Complemental strand, 23107584 - 23107463
Alignment:
Q  53 gattacatcatattcatctaagtctcaaccacaaag-agtttagctactcatgttcatagaaataaacaacataaaaagaaaacaatgccgagagtttcg 151  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||     || |||| ||  || ||| ||||     
T  23107584 gattacatcaaattcatctaagtctcaaccacaaagaaatttagctactcatgttcataaaaataaacaac----taataaaataaacccaagaatttca 23107489  T
Q  152 tagttgccgacgttgctcctgaattt 177  Q
    | ||||||||||||||||||||||||    
T  23107488 ttgttgccgacgttgctcctgaattt 23107463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 36222934 - 36223083
Alignment:
Q  27 agttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagag-tttagctactcatgttcatagaaataaacaacata 125  Q
    |||||||||||||||||||| |||||| |||||||| ||||| || ||    |||||||||||  |||||||||||||||||||| |||||||| | |      
T  36222934 agttcaacaaattaggattcccatagg-ttacatcagattcacctcaggaataaccacaaagaaatttagctactcatgttcataaaaataaac-ataag 36223031  T
Q  126 aaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaattt 177  Q
    ||||||||| ||  || ||| |||| | ||||||||||||||||||||||||    
T  36223032 aaaagaaaataaacccaagaatttcattgttgccgacgttgctcctgaattt 36223083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 3862495 - 3862589
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttag 95  Q
    |||||||||| ||| ||||  |||| |||||||||||||||| |||||||| |||||||| | ||||| |||||||||||| |||||||| ||||    
T  3862495 actagactttcattgatatttaaaggagttcaacaaattagggttctcataagattacattagattcaactaagtctcaactacaaagagattag 3862589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 17601362 - 17601278
Alignment:
Q  92 ttagctactcatgttcatagaaataaacaacata--aaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaa 174  Q
    ||||||||||||||||||||||||||||||||||  ||||||||| ||  || |||||||| | |||||||| ||||||||||||    
T  17601362 ttagctactcatgttcatagaaataaacaacataagaaaagaaaataaacccaagagtttccttgttgccgatgttgctcctgaa 17601278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6966793 - 6966691
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| ||||    
T  6966793 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaagcttaaccataaagagattagttact 6966694  T
Q  101 cat 103  Q
    |||    
T  6966693 cat 6966691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17863694 - 17863796
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| ||||    
T  17863694 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaagcttaaccataaagagattagttact 17863793  T
Q  101 cat 103  Q
    |||    
T  17863794 cat 17863796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17866953 - 17867055
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| ||||    
T  17866953 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaagcttaaccataaagagattagttact 17867052  T
Q  101 cat 103  Q
    |||    
T  17867053 cat 17867055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 23313801 - 23313925
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaag-agtttagctac 99  Q
    |||||||||| ||| |||| ||||| |||| ||||||||||  ||| |||| |||||||||  |||||||||||||||||||||   | |  ||||||||    
T  23313801 actagactttcattgatattcaaaggagtttaacaaattagagttcccataagattacatcggattcatctaagtctcaaccacttggaaaattagctac 23313900  T
Q  100 tcatgttcatagaaataaacaacat 124  Q
    ||||| | || ||||||||||||||    
T  23313901 tcatgattattgaaataaacaacat 23313925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 35773157 - 35773233
Alignment:
Q  27 agttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctactcat 103  Q
    |||||||||||||||  |||| |||||||||||| | |||||||| ||||||||||||||| || |||| |||||||    
T  35773157 agttcaacaaattagagttcttataggattacataagattcatctcagtctcaaccacaaacagattagttactcat 35773233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 24783051 - 24782949
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| |||| ||||| ||||||||||| || | ||| ||||||||||||||| |||||||| |  || ||||||||| || |||| ||||    
T  24783051 actagactttcattgatattcaaaggagttcaacaaactacggttcccataggattacatcagattcatcttaagcttaaccacaaaaagattagttact 24782952  T
Q  101 cat 103  Q
    |||    
T  24782951 cat 24782949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 36843538 - 36843625
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaaga 89  Q
    |||||||||| ||| | || |||||| ||||||||||||||  ||| || | |||||||||| |||||||||||||||| |||||||||    
T  36843538 actagactttcattgacattcaaaga-gttcaacaaattagagttcccacaagattacatcaaattcatctaagtctcagccacaaaga 36843625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 11279138 - 11279068
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||| ||||| ||| |||| ||||| |||||||||||||||| ||| |||||| |||||||| ||||||||    
T  11279138 actaaactttcattgatattcaaaggagttcaacaaattagggttcccatagggttacatcagattcatct 11279068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 23760228 - 23760278
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  23760228 caaaggagttcaacaaattagggttcccataggattacatcagattcatct 23760278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 46846909 - 46846979
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||| ||||| ||| |||| ||||| |||||||||||||||| ||| |||||| |||||||| ||||||||    
T  46846909 actaaactttcattgatattcaaaggagttcaacaaattagggttcccatagggttacatcagattcatct 46846979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 294505 - 294440
Alignment:
Q  6 acttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| ||| |||| ||||| ||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  294505 actttcattgatattcaaaggagttcaacaaactagggttcccataggattacatcagattcatct 294440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 5796238 - 5796203
Alignment:
Q  91 tttagctactcatgttcatagaaataaacaacataa 126  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5796238 tttagctactcatgttcttagaaataaacaacataa 5796203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 33312614 - 33312570
Alignment:
Q  27 agttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||||||||||||||| ||| | ||||||||||||| ||||||||    
T  33312614 agttcaacaaattagggttcccgtaggattacatcagattcatct 33312570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 20527764 - 20527964
Alignment:
Q  3 tagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaa-gagtttagctactc 101  Q
    |||||||| ||| |||| ||||| ||||||||| |||| | ||| ||||  ||||||||| ||||||||| |||||||||| ||| || ||| |||||||    
T  20527764 tagactttcattgatattcaaaggagttcaacacattaaggttcccataaaattacatcagattcatctaggtctcaaccaaaaaagaattt-gctactc 20527862  T
Q  102 atgttcatagaaataaacaacataaaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaatttattctcgattgatgttattgttgt 201  Q
    |||||||||||||||||||||||||| |  ||||||  | |||||||||||||||||||||||||||||||||| |||| || |||| |||| ||| |||    
T  20527863 atgttcatagaaataaacaacataaata--aaacaaaactgagagtttcgtagttgccgacgttgctcctgaatctattttcaattggtgttgttgatgt 20527960  T
Q  202 gcat 205  Q
    ||||    
T  20527961 gcat 20527964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1838119 - 1838017
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| | || ||||| ||||||| |||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||| |||| ||||    
T  1838119 actagactttcattgacattcaaaggagttcaataaattagggttcccataggattacatcagattcatctcagtctcaaccacaaagagattagttact 1838020  T
Q  101 cat 103  Q
    |||    
T  1838019 cat 1838017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15534734 - 15534632
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| | || ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| | |||||||||||||||| |||| ||||    
T  15534734 actagactttcattgacattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaatctcaaccacaaagagattagttact 15534635  T
Q  101 cat 103  Q
    |||    
T  15534634 cat 15534632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 19665264 - 19665366
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| | || ||||  |||||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||||| |||| ||||    
T  19665264 actagactttcattgacattcaaatgagttcaacaaattagggttcccataggattacatcagattcatctcagtctcaaccacaaagagattagttact 19665363  T
Q  101 cat 103  Q
    |||    
T  19665364 cat 19665366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 15537927 - 15537827
Alignment:
Q  3 tagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctactca 102  Q
    |||||||| ||| | || ||||| |||||||||||||||| ||| |||| |||||||||| |||||||| |||||||||||||||||| |||| ||||||    
T  15537927 tagactttcattgacattcaaaggagttcaacaaattagggttcccatatgattacatcaaattcatctcagtctcaaccacaaagagattagttactca 15537828  T
Q  103 t 103  Q
    |    
T  15537827 t 15537827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 32704853 - 32704955
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| |||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| ||||    
T  32704853 actagactttcattgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaagcttaaccataaagagattagttact 32704952  T
Q  101 cat 103  Q
    |||    
T  32704953 cat 32704955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 14790264 - 14790162
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| ||||    
T  14790264 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaagcttaaccataaagagattagttact 14790165  T
Q  101 cat 103  Q
    |||    
T  14790164 cat 14790162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32427014 - 32426944
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||||||||| ||| |||| ||||| ||||||||||| |||| |||||||||||||| |||||||||||||    
T  32427014 actagactttcattgatattcaaaggagttcaacaaactagggttctcataggattatatcatattcatct 32426944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 16883322 - 16883241
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaacc 82  Q
    |||||||||| ||| |||| ||||| |||||||||||||||| ||||||||  ||||||||| |||||| ||||||| ||||    
T  16883322 actagactttcattgatattcaaaggagttcaacaaattagggttctcataaaattacatcagattcatttaagtcttaacc 16883241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14795292 - 14795222
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  14795292 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatct 14795222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7770000 - 7770102
Alignment:
Q  1 actagacttttattcatatgcaaagaagttca-acaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctac 99  Q
    |||||||||| ||| |||| ||| | |||||| ||||||||||  | |||| | ||||||||| ||||||||||||||||||||||| ||| |||| |||    
T  7770000 actagactttcattgatattcaagggagttcatacaaattaggtat-tcatggaattacatcagattcatctaagtctcaaccacaaggagattagttac 7770098  T
Q  100 tcat 103  Q
    ||||    
T  7770099 tcat 7770102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 13017809 - 13017859
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  13017809 caaaggagttcaacaaattagggttcccataggattacatcagattcatct 13017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 12984042 - 12984110
Alignment:
Q  56 tacatcatattcatctaagtctcaaccacaaagagtttagctactcatgttcatagaaataaacaacat 124  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||  | | |||| ||||||||||    
T  12984042 tacatcagattcatctaggtctcaaccacaaagaaattagctactcataattagagaattaaacaacat 12984110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 22221343 - 22221300
Alignment:
Q  27 agttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  22221343 agttcaacaaattagggttc-cataggattacatcagattcatct 22221300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 22247178 - 22247135
Alignment:
Q  27 agttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  22247178 agttcaacaaattagggttc-cataggattacatcagattcatct 22247135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 34065990 - 34065811
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaag-agtttagctac 99  Q
    |||||| ||| ||| |||| |||| ||||||||||||||||||||| |||| ||||||||||  |||||| |||||| |||||||||| | |||||||||    
T  34065990 actagattttcattgatattcaaaaaagttcaacaaattaggattcccataagattacatcaagttcatcaaagtcttaaccacaaagaaatttagctac 34065891  T
Q  100 tcatgttcatagaaataaacaacata--aaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaattt 177  Q
    ||||||||||| ||||||||||||||  ||||||||| ||  || ||| |||| | ||||||||||||||||||||||||    
T  34065890 tcatgttcataaaaataaacaacataagaaaagaaaataaacccaagaatttcattgttgccgacgttgctcctgaattt 34065811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1936273 - 1936171
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||  ||| |||| ||||| |||||||||||||| | ||| |||| |||||||| | ||||||||||||||||||||||||||| |||| ||||    
T  1936273 actagacttccattgatattcaaaggagttcaacaaattatggttcccataagattacatgagattcatctaagtctcaaccacaaagagattagttact 1936174  T
Q  101 cat 103  Q
    |||    
T  1936173 cat 1936171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 41159325 - 41159402
Alignment:
Q  100 tcatgttcatagaaataaacaacataaaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaattt 177  Q
    ||||||||||| ||||||||||||||||||||||| ||  ||||||||||||| |||| |||||||| |||| |||||    
T  41159325 tcatgttcataaaaataaacaacataaaaagaaaataaaaccgagagtttcgttgttgtcgacgttggtcctaaattt 41159402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 13495633 - 13495531
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct-aagtctcaaccacaaagagtttagctac 99  Q
    |||||||||| ||| |||| ||||| ||||||||||| |||| ||| ||||||||||||||||||| |||| |||| | |||||||||||| |||| |||    
T  13495633 actagactttcattgatattcaaaggagttcaacaaactagggttcccataggattacatcatatttatctcaagt-ttaaccacaaagagattagttac 13495535  T
Q  100 tcat 103  Q
    ||||    
T  13495534 tcat 13495531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 10759767 - 10759665
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| ||||    
T  10759767 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaagcttaaccataaagagattagttact 10759668  T
Q  101 cat 103  Q
    |||    
T  10759667 cat 10759665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 27282707 - 27282809
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| |||| |||||  ||||||||||||||| ||| |||||||||| |||| |||||||| ||  | |||||||||||| |||| ||||    
T  27282707 actagactttcattgatattcaaaggtgttcaacaaattagggttcccataggattatatcagattcatctcaggattaaccacaaagagattagttact 27282806  T
Q  101 cat 103  Q
    |||    
T  27282807 cat 27282809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 16190797 - 16190875
Alignment:
Q  22 aaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||| |||||||||||||||| |||  ||| |||||||||| ||||||||||| |||||||||||| || |||| ||||    
T  16190797 aaaggagttcaacaaattagggttcctataagattacatcagattcatctaagactcaaccacaaatagattagttact 16190875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 2734357 - 2734394
Alignment:
Q  100 tcatgttcatagaaataaacaacataaaaagaaaacaa 137  Q
    |||||||||||| |||||||||||||||||||||||||    
T  2734357 tcatgttcatagcaataaacaacataaaaagaaaacaa 2734394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 49147692 - 49147624
Alignment:
Q  56 tacatcatattcatctaagtctcaaccacaaagagtttagctactcatgttcatagaaataaacaacat 124  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||||||  | | |||| ||||||||||    
T  49147692 tacatcagattcatctaggtctcaaccacaaagaaattagctactcataattagagaattaaacaacat 49147624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 13492908 - 13492806
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct-aagtctcaaccacaaagagtttagctac 99  Q
    |||||||||| ||| |||| ||||| ||||||||||| |||| ||| |||| |||||||||| ||| |||| |||| | |||||||||||| |||  |||    
T  13492908 actagactttcattgatattcaaaggagttcaacaaactagggttcccataagattacatcaaatttatctcaagt-ttaaccacaaagagattaattac 13492810  T
Q  100 tcat 103  Q
    ||||    
T  13492809 tcat 13492806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 32506474 - 32506523
Alignment:
Q  22 aaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||| ||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  32506474 aaaggagttcaacaaactagggttcccataggattacatcagattcatct 32506523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 19868653 - 19868527
Alignment:
Q  92 ttagctactcatgttcatagaaataaacaacataaaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaatt--tattctcgattga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| ||||||  | ||  |||||||    
T  19868653 ttagctactcatgttcatagaaataaacaacataaaaagaaaacaaaaccgagagtttcatagttgccgacgttgctcttgaatttctctttccgattga 19868554  T
Q  190 tgttattgttgtgcataccgtagctgct 217  Q
    |||| ||| ||||||| |||||||||||    
T  19868553 tgttgttg-tgtgcatgccgtagctgct 19868527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 25491880 - 25491789
Alignment:
Q  86 aagagtttagctactcatgttcatagaaataaacaacataaaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaattt 177  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||    
T  25491880 aagagcttagctactcatgttcatagaattaaacaacataaaaagaaaacaaaaccgagagtttcgtagttgcggacgttgctcctgaattt 25491789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 11270725 - 11270642
Alignment:
Q  99 ctcatgttcatagaaataaacaacataaaaagaaaa-----caatgccgagagtttcgtagttgccgacgttgctcctgaattt 177  Q
    ||||||||||||||||||||||||||||||||||||     |||  ||||||||||||||||||||||  ||||||||||||||    
T  11270725 ctcatgttcatagaaataaacaacataaaaagaaaaggaaacaaaaccgagagtttcgtagttgccgatcttgctcctgaattt 11270642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 13979116 - 13979048
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaaga 89  Q
    ||||| |||||||||||||||| ||| |||| |||||| ||| |||| ||||||||| |||||||||||    
T  13979116 caaaggagttcaacaaattagggttcccataagattacctcagattcgtctaagtcttaaccacaaaga 13979048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 31878313 - 31878372
Alignment:
Q  44 ttctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctactcat 103  Q
    |||||||| ||||| |||| |||||||||||||||||||| |||||| |||| |||||||    
T  31878313 ttctcataagattatatcagattcatctaagtctcaaccataaagagattagttactcat 31878372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 11139188 - 11139238
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  11139188 caaaggagttcaacaaattagggttcccataggattacatcagattcatct 11139238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 22626932 - 22626982
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  22626932 caaaggagttcaacaaattagggttcccataggattacatcagattcatct 22626982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 12575899 - 12576001
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| |||| ||||| |||||||||||||||| |||  |||||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  12575899 actagactttcattgatattcaaaggagttcaacaaattagggttcctataggattacatcagattcatctaagtctcaaccacaaagagattagttact 12575998  T
Q  101 cat 103  Q
    |||    
T  12575999 cat 12576001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 44007892 - 44007779
Alignment:
Q  67 catctaagtctcaaccaca--aagagtttagctactcatgtt-catagaaataaacaacataaaaagaaaacaatgccgagagtttcgtagttgccgacg 163  Q
    ||||| |||||||||||||  || || ||||||||||||||| |||| |||||||||||||||||||||||| |  |||||||||||||||||||| | |    
T  44007892 catcttagtctcaaccacactaaaagcttagctactcatgtttcataaaaataaacaacataaaaagaaaacgaaaccgagagtttcgtagttgccaatg 44007793  T
Q  164 ttgctcctgaattt 177  Q
    ||||||||||||||    
T  44007792 ttgctcctgaattt 44007779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 13096676 - 13096594
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaacca 83  Q
    |||||||||| ||| |||| ||||| ||||||| |||| ||| ||| |||||||||||||||  |||||||||||||||||||    
T  13096676 actagactttcattgatattcaaaggagttcaataaatcagggttcccataggattacatcaggttcatctaagtctcaacca 13096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 177
Target Start/End: Complemental strand, 14627123 - 14627036
Alignment:
Q  92 ttagctactcatgttcatagaaataaacaacata--aaaagaaaacaatgccgagagtttcgtagttgccgacgttgctcctgaattt 177  Q
    |||||||||||||||| |||||| ||||||||||  ||||||||| ||  || |||||||||| |||| ||| |||| ||||||||||    
T  14627123 ttagctactcatgttcgtagaaacaaacaacataagaaaagaaaataaacccaagagtttcgttgttggcgatgttgttcctgaattt 14627036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 1743981 - 1744017
Alignment:
Q  96 ctactcatgttcatagaaataaacaacataaaaagaa 132  Q
    ||||||||||||||| |||||||||||||||||||||    
T  1743981 ctactcatgttcataaaaataaacaacataaaaagaa 1744017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 29613587 - 29613627
Alignment:
Q  85 aaagagtttagctactcatgttcatagaaataaacaacata 125  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  29613587 aaagaatttagttactcatgttcatagaaataaacaacata 29613627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 1655261 - 1655297
Alignment:
Q  96 ctactcatgttcatagaaataaacaacataaaaagaa 132  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  1655261 ctactcatgttcataaaaataaacaacatataaagaa 1655297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 41779317 - 41779349
Alignment:
Q  52 ggattacatcatattcatctaagtctcaaccac 84  Q
    ||||||||||| |||||||||||||||||||||    
T  41779317 ggattacatcagattcatctaagtctcaaccac 41779349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 32576305 - 32576379
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttag 95  Q
    ||||| |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  32576305 caaaggagttcaacaaattagggttcctataggattacatcatattcatctaagtctcaaccacaaagagattag 32576379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 40017603 - 40017553
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||||||||||    
T  40017603 caaaggagttcaacaaattagggttcccataggattacatcatattcatct 40017553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 13709693 - 13709647
Alignment:
Q  25 gaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  13709693 gaagttcaacaaattagggttcacataggattacatcagattcatct 13709647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 31528015 - 31527965
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  31528015 caaaggagttcaacaaattagggttcccataggattacatcagattcatct 31527965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 36326570 - 36326500
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||||||||| ||| |||| ||||  ||||||||||| |||| ||| ||||||||||||||| ||||||||    
T  36326570 actagactttcattgatattcaaatgagttcaacaaactagggttcccataggattacatcagattcatct 36326500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 31626178 - 31626123
Alignment:
Q  16 atatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||| ||||| |||||||||||||||| ||| | ||||||||||||| ||||||||    
T  31626178 atattcaaaggagttcaacaaattagggttcccgtaggattacatcagattcatct 31626123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 26060232 - 26060151
Alignment:
Q  2 ctagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaacca 83  Q
    ||||||||||||| |||| ||||  ||||||||||| |||||||||||||  |||| |||||||||||||||||||||||||    
T  26060232 ctagacttttattgatattcaaaagagttcaacaaactaggattctcatacaattatatcatattcatctaagtctcaacca 26060151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 647803 - 647905
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| ||||    
T  647803 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaagcttaaccataaagagattagttact 647902  T
Q  101 cat 103  Q
    |||    
T  647903 cat 647905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 26063293 - 26063395
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| | || ||||| |||||||||||| ||| ||| |||| |||||||| | |||||||| |||||||||||||||||  |||| ||||    
T  26063293 actagactttcattgacattcaaaggagttcaacaaatcagggttcccatatgattacattagattcatctcagtctcaaccacaaagaaattagttact 26063392  T
Q  101 cat 103  Q
    |||    
T  26063393 cat 26063395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2541530 - 2541449
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaacca 83  Q
    |||||||||||||| ||||| || ||| |||||||||||||  ||| |||| |||||||| | ||||||||||||||||||||    
T  2541530 actagacttttattgatatgaaaggaa-ttcaacaaattagagttcccataagattacattagattcatctaagtctcaacca 2541449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 651075 - 651178
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattagga-ttctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctac 99  Q
    |||||||||| | | |||| ||||| ||||||||||||||||  ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| |||    
T  651075 actagactttcaatgatattcaaaggagttcaacaaattaggggttcccataggattacatcagattcatctcaagcttaaccataaagagattagttac 651174  T
Q  100 tcat 103  Q
    ||||    
T  651175 tcat 651178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 14617028 - 14617130
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| ||||  |||| ||||||||||| |||| |||||||||||||||||||||||||||| |  || ||||| |||||| |||| ||||    
T  14617028 actagactttcattgatatttaaaggagttcaacaaactagggttctcataggattacatcatattcatctcaagcttaaccagaaagagattagttact 14617127  T
Q  101 cat 103  Q
    |||    
T  14617128 cat 14617130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 22159389 - 22159287
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| ||| | || ||||| |||||||||||||||| ||| | ||||||||||||  |||||||| | |||||||||||||||| |||| ||||    
T  22159389 actagactttcattgacattcaaaggagttcaacaaattagggttcccgtaggattacatcggattcatctcattctcaaccacaaagagattagttact 22159290  T
Q  101 cat 103  Q
    |||    
T  22159289 cat 22159287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 34405494 - 34405392
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccacaaagagtttagctact 100  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| |||||||| |  || ||||| |||||| |||| ||||    
T  34405494 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatctcaagctgaaccataaagagattagttact 34405395  T
Q  101 cat 103  Q
    |||    
T  34405394 cat 34405392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 15532820 - 15532870
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| |||||| |||||||| ||||||||    
T  15532820 caaaggagttcaacaaattagggttcccatagggttacatcagattcatct 15532870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 15543002 - 15543052
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| |||||| |||||||| ||||||||    
T  15543002 caaaggagttcaacaaattagggttcccatagggttacatcagattcatct 15543052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 33574714 - 33574664
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| |||||| |||||||| ||||||||    
T  33574714 caaaggagttcaacaaattagggttcccatagggttacatcagattcatct 33574664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11989417 - 11989478
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatca 62  Q
    |||||||||| ||| |||| ||||| |||||||||||||||| ||| ||||  |||||||||    
T  11989417 actagactttcattgatattcaaaggagttcaacaaattagggttcccataaaattacatca 11989478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 6413 - 6492
Alignment:
Q  5 gacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatctaagtctcaaccac 84  Q
    |||||| ||| |||| ||||| |||||||||||||| | ||| |||| |||||||||| |||||||||| ||||||||||    
T  6413 gactttcattgatattcaaaggagttcaacaaattaaggttcccataagattacatcagattcatctaaatctcaaccac 6492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 244 - 314
Alignment:
Q  1 actagacttttattcatatgcaaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    |||||||||| | | |||| ||||| |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  244 actagactttcaatgatattcaaaggagttcaacaaattagggttcccataggattacatcagattcatct 314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 2317 - 2267
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| | ||||||||||||| ||||||||    
T  2317 caaaggagttcaacaaattagggttcccgtaggattacatcagattcatct 2267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 7612 - 7662
Alignment:
Q  21 caaagaagttcaacaaattaggattctcataggattacatcatattcatct 71  Q
    ||||| |||||||||||||||| ||| | ||||||||||||| ||||||||    
T  7612 caaaggagttcaacaaattagggttcccgtaggattacatcagattcatct 7662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University