View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8750_low_12 (Length: 242)
Name: NF8750_low_12
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8750_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 17674610 - 17674501
Alignment:
| Q |
18 |
taatatagtataagattgtgttgaaagattttatataggtgaagagtgagaatgaatcctcaaaataatcacggctggatttttgggagtctaagaagtg |
117 |
Q |
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| T |
17674610 |
taatatagtataagattgtgttgaaagattttatataggtgaagagtga----gaatcctcaaaataatcagggctggagtttggggagtctaaaaagcg |
17674515 |
T |
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| Q |
118 |
ctaccgaattgagc |
131 |
Q |
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|||||||| ||||| |
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| T |
17674514 |
ctaccgaactgagc |
17674501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 2021992 - 2021960
Alignment:
| Q |
165 |
taatacctaccccatttaaattaaaaaattatg |
197 |
Q |
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| T |
2021992 |
taatacctaccccatttaaattaaaaaaatatg |
2021960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 7390520 - 7390464
Alignment:
| Q |
140 |
aaactatgggcttaaaaataaaatataatacctaccccatttaaattaaaaaattat |
196 |
Q |
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||||||||||| | |||| ||| ||||||||| |||||| ||||||||||||||||| |
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| T |
7390520 |
aaactatgggcctcaaaaaaaattataatacccaccccacttaaattaaaaaattat |
7390464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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