View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8750_low_2 (Length: 563)
Name: NF8750_low_2
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8750_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 16 - 546
Target Start/End: Original strand, 180843 - 181373
Alignment:
| Q |
16 |
cagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatt |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
180843 |
cagtcatcatataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaatatt |
180942 |
T |
|
| Q |
116 |
tcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgtta |
215 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
180943 |
tcacatgttggctctattaccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgtta |
181042 |
T |
|
| Q |
216 |
agaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
181043 |
agaaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccag |
181142 |
T |
|
| Q |
316 |
taacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
181143 |
taacagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttc |
181242 |
T |
|
| Q |
416 |
gggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatatta |
515 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
181243 |
gggcatccctctttcagagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcatatta |
181342 |
T |
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| Q |
516 |
ataaaagtcataagcttcctttttcggtttc |
546 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
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| T |
181343 |
ataaaagtcataagcttcctttttcagtttc |
181373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 16 - 546
Target Start/End: Original strand, 1701270 - 1701800
Alignment:
| Q |
16 |
cagtcatcgtataacatcaaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatt |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
1701270 |
cagtcatcatataacatcaaatctgaacaatatgcagctgcactccgaatatgacggtccagaagaagttcagattggtgatggtacaggtttgaaaatt |
1701369 |
T |
|
| Q |
116 |
tcacatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgtta |
215 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1701370 |
tcacatgttggctctattaccctccctacccccaatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgtta |
1701469 |
T |
|
| Q |
216 |
agaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaag |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1701470 |
agaaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaag |
1701569 |
T |
|
| Q |
316 |
taacagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttc |
415 |
Q |
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|
||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
1701570 |
taacagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttc |
1701669 |
T |
|
| Q |
416 |
gggcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatatta |
515 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||| ||||||| |
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| T |
1701670 |
ggtcatccctctttcagagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgccatatta |
1701769 |
T |
|
| Q |
516 |
ataaaagtcataagcttcctttttcggtttc |
546 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
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| T |
1701770 |
ataaaagtcataagcttcctttttctgtttc |
1701800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 5400031 - 5400124
Alignment:
| Q |
38 |
ctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
131 |
Q |
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|||||||||||||| | || || ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
5400031 |
ctgaacaatatgcacatccattcagaatatgatggtcccgaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
5400124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 26593146 - 26593053
Alignment:
| Q |
33 |
caaatctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttgg |
126 |
Q |
| |
|
|||||||||| |||||||| ||||||| ||||||||||| || |||||||| || ||||||||||||||||||||||||||||| |||||||| |
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| T |
26593146 |
caaatctgaataatatgcacattcactctgaatatgatggcccagaagaagtgcaaattggtgatggtacaggtttgaaaatttcccatgttgg |
26593053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 3541028 - 3541121
Alignment:
| Q |
38 |
ctgaacaatatgcagcttcactccgaatatgatggtcccgaagaagttcagattggtgatggtacaggtttgaaaatttcacatgttggctcta |
131 |
Q |
| |
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|||||||||||||| | || || |||||||||||||| || |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
3541028 |
ctgaacaatatgcacatccattcagaatatgatggtccagaggaagttcaaattggtgatggtacaggtttaaaaatttctcatgttggctcta |
3541121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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