View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8750_low_3 (Length: 456)

Name: NF8750_low_3
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8750_low_3
NF8750_low_3
[»] scaffold0406 (2 HSPs)
scaffold0406 (1-186)||(3109-3294)
scaffold0406 (253-404)||(2891-3041)
[»] chr1 (12 HSPs)
chr1 (1-186)||(29289581-29289766)
chr1 (1-186)||(17653948-17654133)
chr1 (1-182)||(14649735-14649914)
chr1 (1-182)||(14659525-14659704)
chr1 (260-442)||(29289841-29290009)
chr1 (1-185)||(16100201-16100384)
chr1 (253-404)||(17654172-17654322)
chr1 (1-88)||(17479312-17479399)
chr1 (1-61)||(47051069-47051129)
chr1 (1-84)||(10991728-10991811)
chr1 (390-438)||(16099956-16100005)
chr1 (390-438)||(17479628-17479677)
[»] chr2 (17 HSPs)
chr2 (253-442)||(10415069-10415258)
chr2 (1-172)||(10415318-10415486)
chr2 (1-186)||(809223-809408)
chr2 (1-186)||(39155212-39155397)
chr2 (1-186)||(4696080-4696265)
chr2 (1-186)||(44323534-44323718)
chr2 (1-186)||(9311856-9312041)
chr2 (260-438)||(39155452-39155630)
chr2 (253-423)||(9312108-9312278)
chr2 (1-80)||(45331561-45331640)
chr2 (253-404)||(15001506-15001656)
chr2 (42-186)||(15001313-15001456)
chr2 (1-71)||(4405473-4405543)
chr2 (1-182)||(2587618-2587795)
chr2 (1-61)||(31713523-31713583)
chr2 (319-365)||(4405195-4405241)
chr2 (347-437)||(45331383-45331476)
[»] chr6 (15 HSPs)
chr6 (1-186)||(33062477-33062662)
chr6 (1-186)||(9814268-9814453)
chr6 (1-186)||(25478817-25479002)
chr6 (1-186)||(27526697-27526880)
chr6 (41-186)||(9822108-9822253)
chr6 (1-186)||(22013426-22013610)
chr6 (253-404)||(9821896-9822046)
chr6 (253-404)||(25479064-25479214)
chr6 (253-404)||(33062265-33062415)
chr6 (1-182)||(27650503-27650687)
chr6 (1-179)||(28040164-28040339)
chr6 (1-61)||(27683676-27683736)
chr6 (1-61)||(27690997-27691057)
chr6 (1-61)||(17355062-17355122)
chr6 (1-61)||(13142700-13142760)
[»] chr4 (13 HSPs)
chr4 (1-186)||(4764049-4764234)
chr4 (1-186)||(18694721-18694904)
chr4 (1-186)||(27734275-27734457)
chr4 (1-186)||(27561711-27561896)
chr4 (260-438)||(27561951-27562129)
chr4 (4-185)||(54352394-54352574)
chr4 (253-437)||(4764290-4764473)
chr4 (253-406)||(27734512-27734664)
chr4 (1-88)||(11513312-11513399)
chr4 (253-404)||(18694966-18695116)
chr4 (1-122)||(51533183-51533301)
chr4 (32-126)||(5359192-5359286)
chr4 (390-438)||(54352747-54352796)
[»] chr3 (11 HSPs)
chr3 (1-186)||(6911886-6912071)
chr3 (1-186)||(28103271-28103455)
chr3 (1-186)||(28059005-28059190)
chr3 (1-186)||(28069430-28069615)
chr3 (1-185)||(5706093-5706274)
chr3 (253-437)||(6912133-6912316)
chr3 (15-186)||(11200147-11200318)
chr3 (1-61)||(19434586-19434646)
chr3 (1-89)||(9436732-9436820)
chr3 (390-438)||(5706477-5706526)
chr3 (398-438)||(19434196-19434237)
[»] chr8 (7 HSPs)
chr8 (1-186)||(26917842-26918027)
chr8 (1-186)||(4707204-4707389)
chr8 (1-186)||(18981876-18982060)
chr8 (1-132)||(15924446-15924577)
chr8 (1-186)||(26341031-26341216)
chr8 (262-438)||(26918104-26918281)
chr8 (356-404)||(4707391-4707439)
[»] scaffold0713 (2 HSPs)
scaffold0713 (1-186)||(243-428)
scaffold0713 (50-186)||(4379-4515)
[»] chr7 (7 HSPs)
chr7 (1-186)||(28803015-28803200)
chr7 (5-168)||(36264946-36265108)
chr7 (260-437)||(28802783-28802960)
chr7 (24-141)||(22010734-22010852)
chr7 (1-128)||(44060582-44060706)
chr7 (57-181)||(8387466-8387590)
chr7 (1-88)||(29467487-29467574)
[»] chr5 (8 HSPs)
chr5 (1-186)||(42784945-42785129)
chr5 (1-185)||(5520026-5520209)
chr5 (260-433)||(15597844-15598017)
chr5 (15-175)||(32744999-32745158)
chr5 (4-74)||(27198865-27198935)
chr5 (4-73)||(15598156-15598225)
chr5 (112-184)||(15598087-15598159)
chr5 (390-438)||(5520405-5520454)
[»] scaffold0438 (2 HSPs)
scaffold0438 (1-186)||(8211-8396)
scaffold0438 (1-186)||(11192-11377)
[»] scaffold0002 (2 HSPs)
scaffold0002 (260-406)||(10150-10295)
scaffold0002 (110-186)||(413547-413623)
[»] scaffold0654 (2 HSPs)
scaffold0654 (68-186)||(4308-4426)
scaffold0654 (68-186)||(5662-5780)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-104)||(60019-60111)
[»] scaffold0014 (1 HSPs)
scaffold0014 (84-186)||(115628-115730)


Alignment Details
Target: scaffold0406 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 3294 - 3109
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3294 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 3195  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3194 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 3109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 404
Target Start/End: Complemental strand, 3041 - 2891
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| || |||||||| || |||| || |||| |||||||||||||||||||||||   |||||||  |||||||||    
T  3041 cctttcaaagacgcatatttcaaaacc-acatttcacaacatatcaaaactactatgaaaatacatacaatcaaattctgcatttcaatccctctacttt 2943  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa 404  Q
    ||||||| ||||||| ||||||||| |||| || | ||||||||||||||||    
T  2942 ataaatcgcaagtaagatccaaatccaaatagagcgcatattaatatcgaaa 2891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 29289581 - 29289766
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29289581 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattgtaaccgtaattttcaaaacaccattcttaaaa 29289680  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29289681 cacaatgccaaatccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccaaaaatctactactta 29289766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 17653948 - 17654133
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  17653948 ctccatctaatggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 17654047  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  17654048 cacaatgctaaaaccatatttcacaacataacaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta 17654133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 14649914 - 14649735
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14649914 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 14649815  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctacta 182  Q
    ||||   | |||||||||||||  |||||||||||||| || |||| ||| || ||||| |||||||| |||||||||||||    
T  14649814 cacatgtctaaaaccatatttcggaacataacgaaactcatgtcaatatacgt-tcatc-aaactcaatcgaaaatctacta 14649735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 14659704 - 14659525
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14659704 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 14659605  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctacta 182  Q
    ||||   | |||||||||||||  |||||||||||||| || |||| ||| || ||||| |||||||| |||||||||||||    
T  14659604 cacatgtctaaaaccatatttcggaacataacgaaactcatgtcaatatacgt-tcatc-aaactcaatcgaaaatctacta 14659525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 260 - 442
Target Start/End: Original strand, 29289841 - 29290009
Alignment:
Q  260 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctactttataaatc 359  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||              ||||||||||||||    
T  29289841 aaaacgcatatttcaaaacccacggttcacaagatctcaacacaactatgaaaatacatacaatcaaattct--------------ctactttataaatc 29289926  T
Q  360 acaagtaaaatccaaatcgaaatggatcacatattaatatcgaaaatcccaagaacatatatctcaaaaccgtatttcttcat 442  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  29289927 acaagtaaaatccaaatcaaaatggatcacatattaatatcgaaaatcccaagaacacatatctcaaaaccgtatttcttcat 29290009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 16100384 - 16100201
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||    
T  16100384 ctccatccaacggggtaattctacctgattgaaatcacatactaggtgcacctaggtcgtcgtcattatagccgtaattttcaaaacctcattcttaaaa 16100285  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactt 185  Q
    ||||   | ||||||||||||  |||||||||||||||||| |||| |||  | |||||||||||||| ||||||||||| ||||    
T  16100284 cacatgtctaaaaccatattttgcaacataacgaaacttatatcaacatacat-tcatcaaaactcaatcgaaaatctaccactt 16100201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 253 - 404
Target Start/End: Original strand, 17654172 - 17654322
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||||||  |||||||  || ||||||    
T  17654172 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctccatttcaatccctttacttt 17654270  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa 404  Q
    ||||||| | ||||||||||||||| |||| || ||||||||||||||||||    
T  17654271 ataaatcgccagtaaaatccaaatccaaatagagcacatattaatatcgaaa 17654322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 17479312 - 17479399
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 88  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  17479312 ctccatctaacggggtaactatacctaattgaaatcacatactaggtgcacctaggtcgtcgtcactaaaaccataattttcaaaaca 17479399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47051069 - 47051129
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtc 61  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47051069 ctccatctaacggggtaattctacctaattaaaatcacatactaggtgcacctaggtcgtc 47051129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 10991728 - 10991811
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaa 84  Q
    ||||| ||||||| |||| ||||||||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  10991728 ctccacctaacggagtaactctacctaactgatatcacatactaggtgcacttaggtcgtcgtcattatacccgtaattttcaa 10991811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 16100005 - 16099956
Alignment:
Q  390 atattaatatcgaaaat-cccaagaacatatatctcaaaaccgtatttct 438  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  16100005 atattaatatcgaaaattcccaaaaacatatatctcaaaaccgtatttct 16099956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 17479677 - 17479628
Alignment:
Q  390 atattaatatcgaaaat-cccaagaacatatatctcaaaaccgtatttct 438  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  17479677 atattaatatcgaaaattcccaaaaacatatatctcaaaaccgtatttct 17479628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 253 - 442
Target Start/End: Complemental strand, 10415258 - 10415069
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  10415258 cctttccaaaacgcatatttcaaaacccacgtttcacaagatctcaatacaactacgaaaatacatacaatcaaattctccgttttaatttctctacttt 10415159  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaaatcccaagaacatatatctcaaaaccgtatttcttcat 442  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10415158 acaaatcacaagtaaaatccaaatcgaaatggatcgcatattaatatcgaaaatcccaagaacatatatctcaaaaccgtatttcttcat 10415069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 10415486 - 10415318
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10415486 ctccatctaacggagtaactctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 10415387  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccga 172  Q
    |||||| ||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  10415386 cacaattccaaagccatatttc---acataacgaaacttatttcaagatatgtatcatcaaaactcaaccga 10415318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 809223 - 809408
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  809223 ctccatctaatggggtaactctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaa 809322  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | ||| |||||||||  ||||||||||||||||| |||| ||| |  |||||||||||||| |||||||||||||||||    
T  809323 cacatgtctaaatccatatttcggaacataacgaaacttatgtcaatatacgattcatcaaaactcaatcgaaaatctactactta 809408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 39155212 - 39155397
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||     
T  39155212 ctccatctaatggggtaactctacctaattgaaaacacatactaggtgcacctaggtcgacgccattataaccgtaattttcaaaacatcattcttaaac 39155311  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||| ||| || |||||||||||||| |||| ||||| ||||||    
T  39155312 cacaatgctaaaaccatatatcacaacataacgaaacttgtttcaaaatacgtttcatcaaaactcaatcgaagatctattactta 39155397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 4696265 - 4696080
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||||||||||| | |||||||||||| |||||||||||||||||||| | ||||| |||||||||| |||||||||||||| ||||||||||     
T  4696265 ctccatctaacggggtaactatacctaattgaattcacatactaggtgcacctaagccgtcgccattataaccataattttcaaaacatcattcttaaat 4696166  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| |||||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||| |||| || |||||||||    
T  4696165 cacaatgctaaaaccatatattacaacataacgaaacttatttcaaaatacgtatcatcaaaactcaatcgaagatatactactta 4696080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 44323718 - 44323534
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44323718 ctccatctaatggggtaactctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataacagtaattttcaaaacaccattcttaaaa 44323619  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | |||||||||||||| ||||||| |||| |||| |||| ||| || |||||||||| ||| ||||| |||||||||||    
T  44323618 cacatgtctaaaaccatatttcagaacataatgaaatttatgtcaatataggt-tcatcaaaacacaatcgaaagtctactactta 44323534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 9311856 - 9312041
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| || |||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  9311856 ctccatctaatggagtaactctacctaatcgaaatcacatactaggtgcacctaggtcgtcatcattataaccgtaattttcaaaa-accattcttaaaa 9311954  T
Q  101 cacaatg-ccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||||| | ||||||||||||| ||||||||| |||||||| ||||  | |||||||||||||||||   ||| ||||||||||||    
T  9311955 cacaatgtctaaaaccatatttcgcaacataacaaaacttatgtcaaattgtgtatcatcaaaactcagtggaatatctactactta 9312041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 260 - 438
Target Start/End: Original strand, 39155452 - 39155630
Alignment:
Q  260 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctactttataaatc 359  Q
    |||||||||||||||| ||| ||||||||||| || |||| |||| |||||||||||||| |||| ||| ||| |||||||||||| |||||||||||||    
T  39155452 aaaacgcatatttcaacacc-acgtttcacaacatatcaaaacaaatacgaaaatacataaaatccaatcctccgtttcaatttctttactttataaatc 39155550  T
Q  360 acaagtaaaatccaaatcgaaatggatcacatattaatatcgaa-aatcccaagaacatatatctcaaaaccgtatttct 438  Q
    |||||||||||||||||| ||||| | | |||||||| |||||| | || ||||||||| ||||||||||||||||||||    
T  39155551 acaagtaaaatccaaatccaaatgaagcgcatattaacatcgaatattctcaagaacatgtatctcaaaaccgtatttct 39155630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 253 - 423
Target Start/End: Original strand, 9312108 - 9312278
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| |||| |||||||| |||| | | ||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9312108 cctttcaaaaatgcatattttaaaatc-atgtttcacaacatatcaaaacaactacgaaaatacatacaatcaaattctctgtttccatttctctacttt 9312206  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaaa-tcccaagaacatatatct 423  Q
     |||||| ||||||||||||||| | ||||| | | |||||| |||| ||||| | |||||||||| |||||    
T  9312207 gtaaatcccaagtaaaatccaaacccaaatgaagcgcatatttatatagaaaatttccaagaacatttatct 9312278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 45331640 - 45331561
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattt 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  45331640 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtctttataaccgtaattt 45331561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 404
Target Start/End: Original strand, 15001506 - 15001656
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| |||||||| |||||||||||| ||  |||||||  |||||||||    
T  15001506 cctttcaaagacgcatatttcaaaacc-acgtttcacaatatatcaaaactactatgaaaatacgtacaatcaaattttccatttcaatccctctacttt 15001604  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa 404  Q
    ||||||| ||||||||||||||||| |||| || | ||||||||||||||||    
T  15001605 ataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaa 15001656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 15001313 - 15001456
Alignment:
Q  42 ctaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttat 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||     |||| |||||||||| ||||||| ||||||||    
T  15001313 ctaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacatcattcttaaaatacacgtttaaaatcatatttcaccacataaccaaacttat 15001412  T
Q  142 ttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
     |||| ||| || ||||||||||| ||  |||| |||||||||||    
T  15001413 atcaaaatacgt-tcatcaaaactaaattgaaagtctactactta 15001456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 4405543 - 4405473
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataa 71  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4405543 ctccatctaacggggtaactctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataa 4405473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 2587795 - 2587618
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||| ||| ||||||||  ||||| |||     
T  2587795 ctccatctaacagggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcacaattataatcgt-attctcaaaacaaaattctcaaa- 2587698  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctacta 182  Q
     ||    | |||||| ||||||||||||||  ||||| |||  ||| ||||||| |||||||||||||  | ||||||||||    
T  2587697 -acgtctctaaaaccgtatttcacaacatatagaaac-tatgccaaaatatgtaccatcaaaactcaatggtaaatctacta 2587618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 31713583 - 31713523
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtc 61  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  31713583 ctccatctaatggggtaactctacctaattgaaaacacatactaggtgcacctaggtcgtc 31713523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 365
Target Start/End: Complemental strand, 4405241 - 4405195
Alignment:
Q  319 acaatcaaattctctgtttcaatttctctactttataaatcacaagt 365  Q
    ||||||||||||||  |||||||| ||||||||||||||||||||||    
T  4405241 acaatcaaattctccatttcaattcctctactttataaatcacaagt 4405195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 437
Target Start/End: Complemental strand, 45331476 - 45331383
Alignment:
Q  347 tactttataaatcacaagtaaaa--tccaaatcgaaatggatcacatattaatatcgaaaat-cccaagaacatatatctcaaaaccgtatttc 437  Q
    ||||||| |||||||||| ||||  |||||||| ||||||| | ||| | ||||| |||||| ||||  ||||||||||||||||||| |||||    
T  45331476 tactttacaaatcacaagaaaaaaatccaaatccaaatggaccgcatgtcaatattgaaaattcccacaaacatatatctcaaaaccgcatttc 45331383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 154; Significance: 2e-81; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 33062662 - 33062477
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33062662 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcaactaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 33062563  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||| |||||||| ||||||||    
T  33062562 cacaatgctaaaaccatatttcacaacataacaaaacttatttcaaagtatgtatcatcaaaactcaatcgaaaatccactactta 33062477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 9814453 - 9814268
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9814453 ctccatctaatggggtaattctacctaaccgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 9814354  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  9814353 cacaatgctaaaaccatatttcacaacataacaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta 9814268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 25478817 - 25479002
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25478817 ctccatctaacggggtaaatctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 25478916  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| || |||||||||||| ||||||  ||||||||||||| |  ||||||||| |||||||| |||||||||||||||||    
T  25478917 cacaatgctaagaccatatttcactacataataaaacttatttcaaaacgtgtatcatcgaaactcaatcgaaaatctactactta 25479002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 27526880 - 27526697
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27526880 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcatctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 27526781  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | |||||||||||||  |||||||||||||| || |||| ||| || ||||| |||||||| |||||||||||||||||    
T  27526780 cacatgtctaaaaccatatttcggaacataacgaaactcatgtcaatatacgt-tcatc-aaactcaatcgaaaatctactactta 27526697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 9822253 - 9822108
Alignment:
Q  41 actaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaactta 140  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  9822253 actaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaactta 9822154  T
Q  141 tttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  9822153 tttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta 9822108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 22013610 - 22013426
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22013610 ctccatctaatggggtaactctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataacagtaattttcaaaacaccattcttaaaa 22013511  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | |||||||||||||| ||||||| |||| |||| |||| ||| || |||||||||| ||| ||||| |||||||||||    
T  22013510 cacatgtctaaaaccatatttcagaacataatgaaatttatgtcaatataggt-tcatcaaaacacaatcgaaagtctactactta 22013426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 253 - 404
Target Start/End: Complemental strand, 9822046 - 9821896
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||||||  |||||||  |||||||||    
T  9822046 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctccatttcaatccctctacttt 9821948  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa 404  Q
    ||||||| ||||||||||||||||| |||| || | ||||||||||||||||    
T  9821947 ataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaa 9821896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 253 - 404
Target Start/End: Original strand, 25479064 - 25479214
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||||||  |||||||  |||||||||    
T  25479064 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctccatttcaatccctctacttt 25479162  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa 404  Q
    ||||||| ||||||||||||||||| |||| || | ||||||||||||||||    
T  25479163 ataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaa 25479214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 253 - 404
Target Start/End: Complemental strand, 33062415 - 33062265
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| |||| |||||| || |||| || |||| ||||||||||||||||||||||||  |||||||  |||||||||    
T  33062415 cctttcaaagacgcatatttcaaaacc-acgtatcacaacatatcaaaactactatgaaaatacatacaatcaaattctccatttcaatccctctacttt 33062317  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa 404  Q
    ||||||| ||||||||||||||||| |||| || | ||||||||||||||||    
T  33062316 ataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaa 33062265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 27650687 - 27650503
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtc----attataaccgtaattttcaaaacaccattctt 96  Q
    |||| ||||| || |||| |||||||||  ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| ||| ||||    
T  27650687 ctccgtctaatggagtaactctacctaaccgaaatcacatactaggtgcacctaggtcgtcgtcattaattataaccgtaattttcaaaaccccaatctt 27650588  T
Q  97 aaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctacta 182  Q
    ||| ||||   | ||||||||||||| ||| |||||||||||||| |||| |||  | |||||| ||||||| |||||| ||||||    
T  27650587 aaagcacatgtctaaaaccatatttcgcaaaataacgaaacttatatcaaaata-ctttcatcagaactcaatcgaaaacctacta 27650503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 28040339 - 28040164
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||| |||||  ||||| ||||    
T  28040339 ctccatctatcggggtaattctacctaattgaaatcacatactaggtgcacctagatcgtcgtcattataaccg-gattttc-aaacaaaattctcaaaa 28040242  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatcta 179  Q
    |||    | |||  ||| |||||||||| | | |||||||| |||| |||  | |||||||||||||| ||||||||||    
T  28040241 cacgtatctaaactcatctttcacaacaaatcaaaacttatgtcaaaata-ctttcatcaaaactcaatcgaaaatcta 28040164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27683736 - 27683676
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtc 61  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  27683736 ctccatctaatggggtaactctacctaattgaaaacacatactaggtgcacctaggtcgtc 27683676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27691057 - 27690997
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtc 61  Q
    |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  27691057 ctccatctaatggggtaactctacctaattgaaaacacatactaggtgcacctaggtcgtc 27690997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17355122 - 17355062
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtc 61  Q
    ||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  17355122 ctccatctaacggagtaactctgcctaattgaaaacacatactaggtgcacctaggtcgtc 17355062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 13142700 - 13142760
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtc 61  Q
    |||||||||| ||||||| | | |||| ||||| |||||||||||||||||||||||||||    
T  13142700 ctccatctaatggggtaactatccctacttgaattcacatactaggtgcacctaggtcgtc 13142760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 4764049 - 4764234
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4764049 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgtacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 4764148  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| || |||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  4764149 cacaatgctaagaccatatttcacaacataacaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatctactactta 4764234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 18694721 - 18694904
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| || ||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18694721 ctccatctaatggagtaa--ctacctaatcgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 18694818  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  18694819 cacaatgctaaaaccatatttcacaacataacaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatctactactta 18694904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27734275 - 27734457
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||||||| ||||  ||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||    
T  27734275 ctccatctaacggagtaa--ctatctaattgaaatcacatactagatgcacctgggtcgtcatcattataaccataattttcaaaa-accattcttaaaa 27734371  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  27734372 cacaatgctaaaaccatatttcacaacataacgaaacttatttcaagatacgtatcatcaaaactcaatcgaaaatctactactta 27734457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27561711 - 27561896
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||     
T  27561711 ctccatctaatggggtaactctacctaattgaaatcacatactaggtgcacctaggtcgacaccattataaccgtaattttcaaaacatcattcttaaac 27561810  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||| |||| ||||| ||||||    
T  27561811 cacaatgctaaaaccatatatcacaacataacgaaacttgtttcaaaatacgtatcatcaaaactcaatcgaagatctattactta 27561896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 260 - 438
Target Start/End: Original strand, 27561951 - 27562129
Alignment:
Q  260 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctactttataaatc 359  Q
    |||||||||||||||| ||| ||||||||||| || |||| |||| |||||||||||||| |||| ||| ||| |||||||||||| |||||||||||||    
T  27561951 aaaacgcatatttcaacacc-acgtttcacaacatatcaaaacaaatacgaaaatacataaaatccaatcctccgtttcaatttctttactttataaatc 27562049  T
Q  360 acaagtaaaatccaaatcgaaatggatcacatattaatatcgaa-aatcccaagaacatatatctcaaaaccgtatttct 438  Q
    |||||||||||||||||| ||||| | | |||||||| || ||| | || ||||||||| ||||||||||||||||||||    
T  27562050 acaagtaaaatccaaatccaaatgaagcgcatattaacattgaatattctcaagaacatgtatctcaaaaccgtatttct 27562129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 54352394 - 54352574
Alignment:
Q  4 catctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacac 103  Q
    ||||||| || |||| |||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  54352394 catctaatggagtaactctacctaatcgaaatcacatactatgtgcacctaggtcgttgtcattataaccgtaattttcaaaaccccattcttaaaacac 54352493  T
Q  104 aatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactt 185  Q
    |   | ||||||||||||| ||||||||| ||||||    ||| ||| || |||||||||||||| || |||||||| ||||    
T  54352494 atgtctaaaaccatatttcgcaacataacaaaacttggaccaacatacgt-tcatcaaaactcaatcggaaatctaccactt 54352574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 4764290 - 4764473
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||  ||||||||||||||||||||||||  |||||||  |||||||||    
T  4764290 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactgtgaaaatacatacaatcaaattctccatttcaatccctctacttt 4764388  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa-atcccaagaacatatatctcaaaaccgtatttc 437  Q
    ||||||| ||||||||||||||||| |||| || | ||||||||||||||||  | |||| ||||||||| || ||||||||||||    
T  4764389 ataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatatttc-aaaccgtatttc 4764473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 253 - 406
Target Start/End: Original strand, 27734512 - 27734664
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| |||||||||||||||||||| ||||||||||| || |||| ||||||| ||||||||||||||||||||| || ||||||||||||| | |||    
T  27734512 cctttcaaaaacgcatatttcaaaacc-acgtttcacaacatatcaaaacaactatgaaaatacatacaatcaaattatccgtttcaatttctcaaattt 27734610  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaaat 406  Q
    |||||| |||||||||||||||||  ||||| |   |||||||||||| |||||    
T  27734611 ataaattacaagtaaaatccaaattcaaatgaagtgcatattaatatcaaaaat 27734664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11513312 - 11513399
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 88  Q
    |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11513312 ctccatctaacggaataactctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 11513399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 253 - 404
Target Start/End: Original strand, 18694966 - 18695116
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||| ||||||||||||||||||||||||  |||||||  |||||||||    
T  18694966 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactatgaaaatacatacaatcaaattctccatttcaatccctctacttt 18695064  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa 404  Q
    ||||||| ||||||||||||||||| |||| ||   ||||||||||||||||    
T  18695065 ataaatcgcaagtaaaatccaaatccaaatagagtgcatattaatatcgaaa 18695116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 51533301 - 51533183
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| || ||||  ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||  |||||||||||    
T  51533301 ctccatctaatggagtaa--ctacctaatcgaaatcacatactaggtgcacctaggtcgtcgttattataaccgtaattttc-aaacctcattcttaaaa 51533205  T
Q  101 cacaatgccaaaaccatatttc 122  Q
    ||||   | |||||||||||||    
T  51533204 cacatgtctaaaaccatatttc 51533183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 5359192 - 5359286
Alignment:
Q  32 aaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaa 126  Q
    |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| |   | |||||||||||||||||    
T  5359192 aaatcacatagtaggtgcacgtatgtcgtcgtcattataaccgtaattttcaaaacaccatacttaaaacatatgtctaaaaccatatttcacaa 5359286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 54352747 - 54352796
Alignment:
Q  390 atattaatatcgaaaat-cccaagaacatatatctcaaaaccgtatttct 438  Q
    ||||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  54352747 atattaatatcgaaaattcccaaaaacatatatctcaaaatcgtatttct 54352796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 6911886 - 6912071
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6911886 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 6911985  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| || |||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||  ||||||||||||||||    
T  6911986 cacaatgctaagaccatatttcacaacataacaaaacttatttcaaaatacgtatcatcaaaactcaattgaaaatctactactta 6912071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 28103455 - 28103271
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28103455 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaa 28103356  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    || |   | |||||||||||||  |||||||| |||||||| |||| ||| || |||||||||||||| |||||||||||||||||    
T  28103355 catatgtctaaaaccatatttcggaacataacaaaacttatgtcaatatacgt-tcatcaaaactcaatcgaaaatctactactta 28103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 28059005 - 28059190
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28059005 ctccatctaatggggtaactctacctaattgaaatcagatactaggtgctcctaggtcgtcgtcattataaccgtaatttttaaaacaccattcttaaaa 28059104  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccg-aaaatctactactta 186  Q
    ||||   | |||||||||||||| ||||||| ||||||||| |||| ||| || |||||||||||||| || |||||||||||||||    
T  28059105 cacatgtctaaaaccatatttcagaacataatgaaacttatgtcaatataggt-tcatcaaaactcaatcgaaaaatctactactta 28059190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 28069430 - 28069615
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28069430 ctccatctaatggggtaactctacctaattgaaatcagatactaggtgctcctaggtcgtcgtcattataaccgtaatttttaaaacaccattcttaaaa 28069529  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccg-aaaatctactactta 186  Q
    ||||   | |||||||||||||| ||||||| ||||||||| |||| ||| || |||||||||||||| || |||||||||||||||    
T  28069530 cacatgtctaaaaccatatttcagaacataatgaaacttatgtcaatataggt-tcatcaaaactcaatcgaaaaatctactactta 28069615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5706093 - 5706274
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| || ||||  ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||    
T  5706093 ctccatctaatggagtaa--ctacctaatcgaagtcacatactaggtgcacctaggtcgtcgtcattataatcgtaattttcaaaacctcattcttaaaa 5706190  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactt 185  Q
    ||||   | ||||||||||||| |||||||||||||||||| |||| ||| || ||||||||| ||||  |||||||||| ||||    
T  5706191 cacatgtctaaaaccatatttcgcaacataacgaaacttatatcaacatacgt-tcatcaaaattcaattgaaaatctaccactt 5706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 253 - 437
Target Start/End: Original strand, 6912133 - 6912316
Alignment:
Q  253 cctttcgaaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctacttt 352  Q
    |||||| || ||||||||||||||||| ||||||||||| || |||| || |||  ||||||||||||||||||||||||  |||||||  |||||||||    
T  6912133 cctttcaaagacgcatatttcaaaacc-acgtttcacaacatatcaaaactactgggaaaatacatacaatcaaattctccatttcaatccctctacttt 6912231  T
Q  353 ataaatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa-atcccaagaacatatatctcaaaaccgtatttc 437  Q
    ||||||| ||||||||||||||||| |||| || | ||||||||||||||||  | |||| ||||||||| || ||||||||||||    
T  6912232 ataaatcgcaagtaaaatccaaatccaaatagagcgcatattaatatcgaaagtttccaaaaacatatatttc-aaaccgtatttc 6912316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 11200318 - 11200147
Alignment:
Q  15 gtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaac 114  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||||  |  ||||||||||||| ||||| |||| |||   | |||||    
T  11200318 gtaactctacctaactgaaatcacatactaggtgcacctagttcgtcgttattataagtgcgattttcaaaacacaattctcaaaatacatatctaaaac 11200219  T
Q  115 catatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||| |||||||| | | |||||||||| |||| |||| || | |||||||||||  |||||| |||||||||    
T  11200218 catctttcacaaaaaatcgaaacttatgtcaaaatatttaccgtcaaaactcaattgaaaatttactactta 11200147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19434646 - 19434586
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtc 61  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19434646 ctccatctaatggggtaattctacctaattgaaatcacatactaggtgcacctagatcgtc 19434586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 9436732 - 9436820
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacac 89  Q
    ||||||||||||| |||| |||||||||  |||||||||||||||||||||||||||||||   ||||||| |||| || |||||||||    
T  9436732 ctccatctaacggagtaactctacctaaccgaaatcacatactaggtgcacctaggtcgtcacaattataatcgtatttctcaaaacac 9436820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 5706477 - 5706526
Alignment:
Q  390 atattaatatcgaaaat-cccaagaacatatatctcaaaaccgtatttct 438  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||||||||||    
T  5706477 atattaatatcgaaaattcccaaaaacatatctctcaaaaccgtatttct 5706526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 438
Target Start/End: Complemental strand, 19434237 - 19434196
Alignment:
Q  398 atcgaaaat-cccaagaacatatatctcaaaaccgtatttct 438  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  19434237 atcgaaaattcccaaaaacatatatctcaaaaccgtatttct 19434196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 26917842 - 26918027
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  26917842 ctccatccaacggggtaactctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataatttttaaaacaccattcttaaaa 26917941  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| || |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  26917942 cacaatgctaagaccatatttcacaacataacgaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatctactactta 26918027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 4707204 - 4707389
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  4707204 ctccatctaatggggtaactctacctaattgaaatcacatactaggtacacctaggtcgtcgtcattataatcataattttcaaaacaccattcttaaaa 4707303  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| || |||||    
T  4707304 cacaatgctaaaaccatatttcacaacataacaaaacttatttcaaaatatgtatcatcaaaactcaatcgaaaatccacaactta 4707389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 18982060 - 18981876
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18982060 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaa 18981961  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | |||| ||||||||  ||||||||||||||||| |||| ||| || ||| |||||||||| | |||||||||||||||    
T  18981960 cacatgtctaaaagcatatttcggaacataacgaaacttatgtcaatatacgt-tcaccaaaactcaatcaaaaatctactactta 18981876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 15924577 - 15924446
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15924577 ctccatctaatggggtaattctacctaaccgaaatcacatactaggtgcacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 15924478  T
Q  101 cacaatgccaaaaccatatttcacaacataac 132  Q
    |||||||| |||||||||||||||||||||||    
T  15924477 cacaatgctaaaaccatatttcacaacataac 15924446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 26341031 - 26341216
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||| |||||| |||| |||||||||   ||||||||||||||||||||  ||||||||||| |||||||||| |||| |||||||||||||||||||    
T  26341031 ctccatttaacggagtaactctacctaaccaaaatcacatactaggtgcacacaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaa 26341130  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | ||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||  ||||||| ||||||||    
T  26341131 cacatgtctaaaaccatatttcgcaacataacgaaacttatgtcaaaataggtatcatcaaaactcaattgaaaatccactactta 26341216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 262 - 438
Target Start/End: Original strand, 26918104 - 26918281
Alignment:
Q  262 aacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctactttataaatcac 361  Q
    |||||||||||||||||| | ||||||||| || |||||| ||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||    
T  26918104 aacgcatatttcaaaacc-atgtttcacaacatatcaacaaaactatgaaaatacatacaatgaaattttccgtttcaatttctctactttataaatcac 26918202  T
Q  362 aagt-aaaatccaaatcgaaatggatcacatattaatatcgaaaa-tcccaagaacatatatctcaaaaccgtatttct 438  Q
    |||| ||||| |||||  ||||||| | |||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  26918203 aagtaaaaattcaaattcaaatggagcgcatattaatatcaaaaatttccaagaacatatatctcaaaaccgtatttct 26918281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 4707391 - 4707439
Alignment:
Q  356 aatcacaagtaaaatccaaatcgaaatggatcacatattaatatcgaaa 404  Q
    ||||| |||||||||||||||| |||| || | ||||||||||||||||    
T  4707391 aatcataagtaaaatccaaatccaaatagagcgcatattaatatcgaaa 4707439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 428 - 243
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  428 ctccatctaatggggtaattctgcctaattgaaatcacatactaggtgtacctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaa 329  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  328 cacaatgctaaaaccatatttcacaacataacaaaacttatttcaaaatacgtatcatcaaaactcaatcgaaaatccactactta 243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 4515 - 4379
Alignment:
Q  50 acctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagat 149  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||    
T  4515 acctaggtcgtcgtcattataaccataattttcaaaacaccattcttaaaacacaatgctaaaaccatatttcacaacataacaaaacttatttcaaaat 4416  T
Q  150 atgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    | ||||||||||||||||| |||||||| ||||||||    
T  4415 acgtatcatcaaaactcaatcgaaaatccactactta 4379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 6e-72; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 28803200 - 28803015
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||     
T  28803200 ctccatctaacggggtaactctacctaattgaaatcacatactaggtgcacctaggtcgtcgccattataaccgtaattttcaaaacatcattcttaaat 28803101  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||| ||| |||||||||| ||||||||||||||||||| |||||| ||| ||||||||||||||||| |||| ||||||||||||    
T  28803100 cacagtgctaaaaccatatatcacaacataacgaaacttgtttcaaaatacgtatcatcaaaactcaatcgaagatctactactta 28803015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 36264946 - 36265108
Alignment:
Q  5 atctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacaca 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||  |||| ||||||||||    
T  36264946 atctaacggggtaactctacctaattgaaatcacatactaggtgaacctaggtcgtcgtcattataattgtaattttcaaaacctcatttttaaaacaca 36265045  T
Q  105 atgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaa 168  Q
       | |||||||||||||  ||||| || |||||||| |||| |||||| ||||||||||||||    
T  36265046 tgtctaaaaccatatttcgtaacattacaaaacttatatcaacatatgt-tcatcaaaactcaa 36265108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 260 - 437
Target Start/End: Complemental strand, 28802960 - 28802783
Alignment:
Q  260 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctactttataaatc 359  Q
    ||||||||||||||||  |||||||||||||  || |||| |||| |||||||||||||| |||| ||| ||| |||||||||||| |||||||||||||    
T  28802960 aaaacgcatatttcaac-cccacgtttcacaccatatcaaaacaaatacgaaaatacataaaatccaatcctccgtttcaatttctttactttataaatc 28802862  T
Q  360 acaagtaaaatccaaatcgaaatggatcacatattaatatcgaaaa-tcccaagaacatatatctcaaaaccgtatttc 437  Q
    |||||||||||||||||| ||||| | | |||||||| |||||||| |  ||| || || |||||||||||||||||||    
T  28802861 acaagtaaaatccaaatccaaatgaagcgcatattaacatcgaaaattttcaaaaatatgtatctcaaaaccgtatttc 28802783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 22010852 - 22010734
Alignment:
Q  24 cctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaa-caccattcttaaaacacaatgccaaaaccatatttc 122  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||   || |||||||||||||   | |||||||||||||    
T  22010852 cctaatcgaaatcacatactaggtgcacctaggtcgtcatcattataactgtaattttcaaaaggcccgttcttaaaacacatgtctaaaaccatatttc 22010753  T
Q  123 acaacataacgaaacttat 141  Q
    |||||||||||||||||||    
T  22010752 acaacataacgaaacttat 22010734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 44060582 - 44060706
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||  ||||| |||||||  |||| ||||    
T  44060582 ctccatctaatggggtaagtctacctaattgaaatcacatactaggtgcacctaggtcgtcg---ttataaccgcgatttttaaaacacagttctcaaaa 44060678  T
Q  101 cacaatgccaaaaccatatttcacaaca 128  Q
    ||||   | |||||||| ||||||||||    
T  44060679 cacatatcgaaaaccatctttcacaaca 44060706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 8387466 - 8387590
Alignment:
Q  57 tcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatc 156  Q
    ||||| |||||| | |||| ||||||||||||  ||||| ||||||||   | |||||  | ||| |||||||| | |||||||| |||| |||||||      
T  8387466 tcgtcatcattacatccgtgattttcaaaacaaaattctgaaaacacatctctaaaacactcttttacaacatatcaaaacttatgtcaaaatatgtaaa 8387565  T
Q  157 atcaaaactcaaccgaaaatctact 181  Q
    ||||||||||||  |||||||||||    
T  8387566 atcaaaactcaattgaaaatctact 8387590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 29467487 - 29467574
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacata-ctaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaaca 88  Q
    |||||||||||| | ||| ||| |||||| || |||| ||| |||||||||||||| ||||||||| ||||| ||| ||||| ||||||    
T  29467487 ctccatctaacgcg-taactctccctaatcgagatcatataactaggtgcacctagatcgtcgtcactataatcgtgattttaaaaaca 29467574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 42785129 - 42784945
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42785129 ctccatctaatggggtaactctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaatcttcaaaacaccattcttaaaa 42785030  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | |||||||||||||  ||||||||||||||||| || | ||| || |||||||||||||| |||||||||||||||||    
T  42785029 cacatgtctaaaaccatatttcggaacataacgaaacttatgtcgatatacgt-tcatcaaaactcaatcgaaaatctactactta 42784945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5520026 - 5520209
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  5520026 ctccatctaatggagtaactctacctaatcgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacctcattcttaaaa 5520125  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactt 185  Q
    ||||   | ||||||||||||| ||||||||| |||||||  |||| ||| || |||||||||||||| ||||||||||| ||||    
T  5520126 cacatgtctaaaaccatatttcgcaacataacaaaacttagatcaacatacgt-tcatcaaaactcaatcgaaaatctaccactt 5520209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 260 - 433
Target Start/End: Complemental strand, 15598017 - 15597844
Alignment:
Q  260 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctactttataaatc 359  Q
    |||||||||||||||||||| ||||||||||| || |||| ||||||||||| ||||||| |||||||| ||| |||||||||||| |||||||||||||    
T  15598017 aaaacgcatatttcaaaacc-acgtttcacaacatatcaaaacaactacgaatatacataaaatcaaatcctccgtttcaatttctttactttataaatc 15597919  T
Q  360 acaagtaaaatccaaatcgaaatggatcacatattaatatcgaaaa-tcccaagaacatatatctcaaaaccgta 433  Q
    |||||||||||||||||| | ||| | |||||||||| || ||||| || |||||||||||||||||||||||||    
T  15597918 acaagtaaaatccaaatccacatgaagcacatattaacatagaaaattctcaagaacatatatctcaaaaccgta 15597844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 32744999 - 32745158
Alignment:
Q  15 gtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaac 114  Q
    |||| |||||||||  |||||||||||| ||||||| |||||| || ||||||||||||| |||||||||||| |||||||| |||||||   | |||||    
T  32744999 gtaactctacctaaccgaaatcacatacaaggtgcatctaggttgttgtcattataaccgaaattttcaaaaccccattcttcaaacacatgtctaaaac 32745098  T
Q  115 catatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaa 175  Q
    |||||||| |||||||||||||| | | |||| ||| || ||||||||||| || ||||||    
T  32745099 catatttcgcaacataacgaaacatgtatcaaaatacgt-tcatcaaaacttaatcgaaaa 32745158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 27198865 - 27198935
Alignment:
Q  4 catctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccg 74  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27198865 catctaacggggtaactatacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccg 27198935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 15598225 - 15598156
Alignment:
Q  4 catctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataacc 73  Q
    |||||||||| |||| ||| |||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  15598225 catctaacggagtaactcttcctatttgaaatcacgtactaggtgcacctaggtcgtcgtcattataacc 15598156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 15598159 - 15598087
Alignment:
Q  112 aaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactact 184  Q
    |||||||||||| ||||||| ||||||| |||||| ||| |||||||||||||||||  ||||||||||||||    
T  15598159 aaccatatttcataacataatgaaacttgtttcaaaatacgtatcatcaaaactcaattgaaaatctactact 15598087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 5520405 - 5520454
Alignment:
Q  390 atattaatatcgaaaat-cccaagaacatatatctcaaaaccgtatttct 438  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5520405 atattaatatcgaaaattcccaaaaacatatatctcaaaaccgtatttct 5520454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 8211 - 8396
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||| |||||||| |||| |||||||||   ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||    
T  8211 ctccgtctaacggagtaactctacctaaccaaaatcacatactaggtgcacctaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaa 8310  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | ||||||||||||| |||||||| ||||||||| |||| ||| |||||||||||||||||  ||||||| ||||||||    
T  8311 cacatgtctaaaaccatatttcgcaacataaggaaacttatgtcaaaataggtatcatcaaaactcaattgaaaatccactactta 8396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 11192 - 11377
Alignment:
Q  1 ctccatctaacggggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgtaattttcaaaacaccattcttaaaa 100  Q
    |||||| |||||| |||| |||||||||   ||||||||||||||||||||  ||||||||||| |||||||||| |||| |||||||||||||||||||    
T  11192 ctccatttaacggagtaactctacctaaccaaaatcacatactaggtgcacacaggtcgtcgtccttataaccgtcatttacaaaacaccattcttaaaa 11291  T
Q  101 cacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    ||||   | ||||||||||||| |||||||||||||||||| |||| ||| |||||||||||||||||  ||||||| ||||||||    
T  11292 cacatgtctaaaaccatatttcgcaacataacgaaacttatgtcaaaataggtatcatcaaaactcaattgaaaatccactactta 11377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 260 - 406
Target Start/End: Complemental strand, 10295 - 10150
Alignment:
Q  260 aaaacgcatatttcaaaacccacgtttcacaagatctcaacacaactacgaaaatacatacaatcaaattctctgtttcaatttctctactttataaatc 359  Q
    ||||||||||||||||  |||||||||||||| || |||| |||| |||||||||||||| |||| ||| ||| |||||||||| | |||||||||||||    
T  10295 aaaacgcatatttcaac-cccacgtttcacaacatgtcaaaacaaatacgaaaatacataaaatccaatcctccgtttcaatttttttactttataaatc 10197  T
Q  360 acaagtaaaatccaaatcgaaatggatcacatattaatatcgaaaat 406  Q
    |||||||||||||||||| ||||| | | |||||||| |||||||||    
T  10196 acaagtaaaatccaaatccaaatgaagcgcatattaacatcgaaaat 10150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 413547 - 413623
Alignment:
Q  110 aaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactactta 186  Q
    |||||||||||||| | |||| |||||||||| |||| ||||||| |||||||||||||  ||||||||||||||||    
T  413547 aaaaccatatttcaaatcatatcgaaacttatgtcaaaatatgtaccatcaaaactcaattgaaaatctactactta 413623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 4308 - 4426
Alignment:
Q  68 ataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactca 167  Q
    ||||| ||| |||||||||||||||||||||||||||   | |||||||||||| |||||||||||||| |||| |||| |||||||||||||||| |||    
T  4308 ataactgtagttttcaaaacaccattcttaaaacacatgtctaaaaccatattttacaacataacgaaatttatgtcaaaatatgtatcatcaaaagtca 4407  T
Q  168 accgaaaatctactactta 186  Q
    |  |||||| |||||||||    
T  4408 attgaaaatttactactta 4426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 5662 - 5780
Alignment:
Q  68 ataaccgtaattttcaaaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactca 167  Q
    ||||| ||| |||||||||||||||||||||||||||   | |||||||||||| |||||||||||||| |||| |||| |||||||||||||||| |||    
T  5662 ataactgtagttttcaaaacaccattcttaaaacacatgtctaaaaccatattttacaacataacgaaatttatgtcaaaatatgtatcatcaaaagtca 5761  T
Q  168 accgaaaatctactactta 186  Q
    |  |||||| |||||||||    
T  5762 attgaaaatttactactta 5780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 60111 - 60019
Alignment:
Q  13 gggtaattctacctaattgaaatcacatactaggtgcacctaggtcgtcgtcattataaccgt-aattttcaaaacaccattcttaaaacaca 104  Q
    |||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||   | | ||||||||||||||||||| |||||||    
T  60111 gggtaactctccctaatcgaaatcacatactaggtgcacctaggtcgtcgtcattataattatgatttttcaaaacaccattctttaaacaca 60019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 115628 - 115730
Alignment:
Q  84 aaacaccattcttaaaacacaatgccaaaaccatatttcacaacataacgaaacttatttcaagatatgtatcatcaaaactcaaccgaaaatctactac 183  Q
    ||||||||||||||||| |||   | ||||||||||||  ||||||||||||| |||| | || ||| |||||||||||||||||  |||||| ||||||    
T  115628 aaacaccattcttaaaatacatgtctaaaaccatattttgcaacataacgaaatttatgtgaaaataggtatcatcaaaactcaattgaaaatttactac 115727  T
Q  184 tta 186  Q
    |||    
T  115728 tta 115730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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