View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8750_low_5 (Length: 406)

Name: NF8750_low_5
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8750_low_5
NF8750_low_5
[»] chr1 (6 HSPs)
chr1 (17-392)||(10303616-10303993)
chr1 (17-84)||(9443575-9443642)
chr1 (16-84)||(4566960-4567028)
chr1 (16-84)||(19227216-19227284)
chr1 (17-58)||(31197094-31197135)
chr1 (16-84)||(42267306-42267374)
[»] chr7 (5 HSPs)
chr7 (20-84)||(7354865-7354929)
chr7 (16-84)||(15714649-15714717)
chr7 (16-84)||(23609017-23609085)
chr7 (18-62)||(18855435-18855479)
chr7 (43-83)||(20567383-20567423)
[»] scaffold0181 (1 HSPs)
scaffold0181 (17-84)||(9461-9528)
[»] chr5 (1 HSPs)
chr5 (16-84)||(12904757-12904825)
[»] chr3 (4 HSPs)
chr3 (16-84)||(26479073-26479141)
chr3 (41-76)||(14633509-14633544)
chr3 (20-84)||(26479286-26479350)
chr3 (36-84)||(44654880-44654928)
[»] chr4 (2 HSPs)
chr4 (17-84)||(11857895-11857962)
chr4 (17-61)||(7280235-7280279)
[»] chr8 (1 HSPs)
chr8 (20-84)||(31873260-31873324)


Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 10303993 - 10303616
Alignment:
Q  17 caggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaactaaatttattggatttctttaatggttccct 116  Q
    ||||||||||||||| | |||  ||||||||||| || |||||||| |||||| |||||| ||||||||||||||||||| |||||||||||||| ||||    
T  10303993 caggattaacgaatacatagatcattttttaaatgactcctatttgcagagaccaaacacatataaaactaaatttattgtatttctttaatggtcccct 10303894  T
Q  117 cataaaaa-gaatggctagctttgccaatgactctcaccgtgcttcttcatccctctcacagaaacatggtggaacacattggtctctagtggagtaagg 215  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10303893 cataaaaaagaatggctagctttgccaatgactctcaccgtgcttcttcatccctctcacagaaacatggtggaacacattggtctctagtggagtaagg 10303794  T
Q  216 aagcccattactagatatgtgcaataatcatatattcgttaaatacatattcttctaaatatcttgactaatttttattctnnnnnnnnnnnnnctt-aa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||| ||    
T  10303793 aagcccattactagatatgtgcaataatcatatattcgttaaatacatattcttctaaatatcttgactaatttttattctaaaaaataaaaaacttgaa 10303694  T
Q  315 ctaatttgttacacttaatggatgtgcaaatattttggtcagcatctatttcccattgtaggagaatttctcacaaga 392  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10303693 gtaatttgttacacttaatggatgtgcaaatattttggtcagcatctatttcccattgtaggagaatttctcacaaga 10303616  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 9443642 - 9443575
Alignment:
Q  17 caggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    ||||||||| ||||| |||||| ||||||||||| ||||||||||| |  |||||||||| |||||||    
T  9443642 caggattaaggaatacagagaccattttttaaatgacccctatttgcaaggactaaacacatataaaa 9443575  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 4567028 - 4566960
Alignment:
Q  16 tcaggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    |||||||||||||||| |||||| ||||||||||| || | |||||| || ||| |||||| |||||||    
T  4567028 tcaggattaacgaataaagagaccattttttaaatgactcatatttgtagggacgaaacacatataaaa 4566960  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 19227216 - 19227284
Alignment:
Q  16 tcaggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    |||||||||| ||||| |  ||| ||||||||||| |||| |||||| ||||||||||||| |||||||    
T  19227216 tcaggattaaggaatacaaggactattttttaaatgacccttatttgtagagactaaacacatataaaa 19227284  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 31197135 - 31197094
Alignment:
Q  17 caggattaacgaatatagagacaattttttaaataaccccta 58  Q
    ||||||||||||||| |||||||| ||||||||| |||||||    
T  31197135 caggattaacgaatacagagacaaatttttaaatgaccccta 31197094  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 42267374 - 42267306
Alignment:
Q  16 tcaggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    |||||||||| ||||| || ||| | ||||||||| ||||||||||| || || ||||||| |||||||    
T  42267374 tcaggattaaagaatacagggaccaatttttaaatgacccctatttgcagggaataaacacatataaaa 42267306  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 7354929 - 7354865
Alignment:
Q  20 gattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    ||||||||||||||| ||| | ||||||||| ||||||||||| ||  |||||||||||||||||    
T  7354929 gattaacgaatatagggaccaatttttaaatgacccctatttgcaggaactaaacacgtataaaa 7354865  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 15714649 - 15714717
Alignment:
Q  16 tcaggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    |||||||||| ||||  |||||| | ||||||||| ||||||||||| || |||||||||| |||||||    
T  15714649 tcaggattaaggaatgcagagaccaatttttaaatgacccctatttgcagggactaaacacatataaaa 15714717  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 23609017 - 23609085
Alignment:
Q  16 tcaggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    |||||||||| |||||||| ||| ||||||||||| | ||||||||| || || ||||||| |||||||    
T  23609017 tcaggattaaggaatatagggaccattttttaaatgatccctatttgcagggattaaacacatataaaa 23609085  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 18855479 - 18855435
Alignment:
Q  18 aggattaacgaatatagagacaattttttaaataacccctatttg 62  Q
    ||||||||||| ||||| ||| ||||||||||| |||||||||||    
T  18855479 aggattaacgattatagggaccattttttaaatgacccctatttg 18855435  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 20567383 - 20567423
Alignment:
Q  43 ttttaaataacccctatttggagagactaaacacgtataaa 83  Q
    |||||||||||||||||||| || |||||||||| ||||||    
T  20567383 ttttaaataacccctatttgtagggactaaacacatataaa 20567423  T

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Target: scaffold0181 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 9461 - 9528
Alignment:
Q  17 caggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    ||||||||| |||||||| ||| ||||||||||| | |||| ||||||| |||||||||| |||||||    
T  9461 caggattaaggaatatagggaccattttttaaatgatccctgtttggagggactaaacacatataaaa 9528  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 12904825 - 12904757
Alignment:
Q  16 tcaggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    |||||||||||||||| || ||| ||||||||||| | |||||||| ||| |||||||||  |||||||    
T  12904825 tcaggattaacgaatacagggaccattttttaaatgatccctatttagagggactaaacagatataaaa 12904757  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 26479141 - 26479073
Alignment:
Q  16 tcaggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    ||||||||||||| || |  ||| ||||||||||| ||||||||||| || |||||||||| |||||||    
T  26479141 tcaggattaacgattacatggaccattttttaaatcacccctatttgcagggactaaacacatataaaa 26479073  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 14633544 - 14633509
Alignment:
Q  41 ttttttaaataacccctatttggagagactaaacac 76  Q
    |||||||||||||||||||||| |||||||||||||    
T  14633544 ttttttaaataacccctatttgcagagactaaacac 14633509  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 26479286 - 26479350
Alignment:
Q  20 gattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    |||||| || || |||||| ||||||||||| ||||||||||  || |||||||||| |||||||    
T  26479286 gattaaggattacagagaccattttttaaatgacccctatttacagggactaaacacatataaaa 26479350  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 44654880 - 44654928
Alignment:
Q  36 gacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    ||||| ||||||||| ||||||||||| || |||||||||| |||||||    
T  44654880 gacaaatttttaaatgacccctatttgcagggactaaacacatataaaa 44654928  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 11857962 - 11857895
Alignment:
Q  17 caggattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    ||||||||| ||||| || ||| ||||||||||| ||| ||||||| || |||||||||| |||||||    
T  11857962 caggattaaggaatacagggaccattttttaaatgacctctatttgcagggactaaacacatataaaa 11857895  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 7280279 - 7280235
Alignment:
Q  17 caggattaacgaatatagagacaattttttaaataacccctattt 61  Q
    ||||||||| ||||| |||||| ||||||||||| ||||||||||    
T  7280279 caggattaaagaatacagagaccattttttaaatgacccctattt 7280235  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 31873260 - 31873324
Alignment:
Q  20 gattaacgaatatagagacaattttttaaataacccctatttggagagactaaacacgtataaaa 84  Q
    |||||||||||| |  ||| ||||||||||| |||| |||||| || |||||||||| |||||||    
T  31873260 gattaacgaataaaaggaccattttttaaatgacccatatttgcagggactaaacacatataaaa 31873324  T

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