View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8750_low_6 (Length: 403)

Name: NF8750_low_6
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8750_low_6
NF8750_low_6
[»] chr2 (17 HSPs)
chr2 (15-381)||(34659426-34659800)
chr2 (169-305)||(17374629-17374764)
chr2 (169-305)||(4868943-4869079)
chr2 (169-304)||(11163708-11163842)
chr2 (169-303)||(1552249-1552381)
chr2 (175-303)||(17282600-17282727)
chr2 (169-263)||(1894739-1894833)
chr2 (176-296)||(33417083-33417203)
chr2 (202-262)||(5050975-5051035)
chr2 (170-230)||(30799263-30799323)
chr2 (325-368)||(17282536-17282579)
chr2 (198-262)||(3258071-3258135)
chr2 (171-259)||(6186842-6186930)
chr2 (325-368)||(4869100-4869143)
chr2 (326-368)||(1552185-1552227)
chr2 (259-304)||(30799326-30799371)
chr2 (171-247)||(36592515-36592591)
[»] chr8 (10 HSPs)
chr8 (169-305)||(20860612-20860748)
chr8 (169-301)||(5993937-5994069)
chr8 (169-305)||(10408139-10408275)
chr8 (171-274)||(6443326-6443429)
chr8 (175-282)||(13995463-13995570)
chr8 (176-259)||(20516253-20516336)
chr8 (172-229)||(40413044-40413101)
chr8 (171-262)||(10181590-10181679)
chr8 (171-222)||(8170664-8170715)
chr8 (171-222)||(38149911-38149962)
[»] chr1 (18 HSPs)
chr1 (171-301)||(11408462-11408592)
chr1 (169-305)||(615054-615190)
chr1 (169-301)||(27340256-27340388)
chr1 (183-301)||(6504422-6504540)
chr1 (169-305)||(34117413-34117549)
chr1 (169-305)||(34653204-34653340)
chr1 (218-305)||(39709674-39709762)
chr1 (171-262)||(14351759-14351850)
chr1 (169-303)||(25790952-25791084)
chr1 (171-259)||(39629186-39629274)
chr1 (174-216)||(15123858-15123900)
chr1 (174-216)||(15148046-15148088)
chr1 (169-262)||(11814173-11814265)
chr1 (175-260)||(47896356-47896441)
chr1 (171-262)||(10494322-10494412)
chr1 (174-215)||(15115649-15115690)
chr1 (174-215)||(15140165-15140206)
chr1 (171-251)||(49098092-49098172)
[»] chr5 (23 HSPs)
chr5 (169-309)||(7269968-7270108)
chr5 (175-305)||(6030995-6031126)
chr5 (169-309)||(26656041-26656184)
chr5 (169-309)||(26927628-26927771)
chr5 (169-305)||(1377541-1377676)
chr5 (169-295)||(27170797-27170921)
chr5 (173-303)||(21600515-21600646)
chr5 (169-303)||(6989154-6989287)
chr5 (169-293)||(18696319-18696443)
chr5 (170-260)||(38959301-38959391)
chr5 (176-262)||(27632642-27632728)
chr5 (171-260)||(12155743-12155832)
chr5 (325-368)||(7270126-7270169)
chr5 (325-368)||(26656201-26656244)
chr5 (325-368)||(26927788-26927831)
chr5 (171-222)||(30776968-30777019)
chr5 (183-260)||(9435992-9436069)
chr5 (183-260)||(36608315-36608392)
chr5 (169-242)||(41356932-41357005)
chr5 (325-368)||(6989307-6989350)
chr5 (325-355)||(38959210-38959240)
chr5 (327-368)||(6030932-6030973)
chr5 (169-222)||(33757694-33757747)
[»] chr3 (11 HSPs)
chr3 (169-301)||(3364165-3364297)
chr3 (169-296)||(43275264-43275391)
chr3 (169-267)||(893663-893761)
chr3 (172-368)||(18270320-18270515)
chr3 (171-270)||(27741820-27741919)
chr3 (327-368)||(893549-893590)
chr3 (171-222)||(2566829-2566880)
chr3 (171-222)||(20585547-20585598)
chr3 (175-238)||(50735378-50735441)
chr3 (175-238)||(50777414-50777477)
chr3 (175-260)||(52984871-52984956)
[»] chr7 (16 HSPs)
chr7 (169-305)||(3301738-3301875)
chr7 (169-293)||(1777892-1778012)
chr7 (169-274)||(29549910-29550015)
chr7 (169-263)||(11699043-11699137)
chr7 (176-262)||(26199187-26199273)
chr7 (235-305)||(39020870-39020940)
chr7 (175-244)||(21321530-21321599)
chr7 (171-262)||(5893367-5893459)
chr7 (171-259)||(36933794-36933882)
chr7 (171-262)||(15121908-15121999)
chr7 (171-222)||(47718829-47718880)
chr7 (175-281)||(19289695-19289801)
chr7 (171-222)||(9249869-9249920)
chr7 (171-222)||(9283419-9283470)
chr7 (176-301)||(3959054-3959175)
chr7 (175-222)||(25970013-25970060)
[»] scaffold0005 (2 HSPs)
scaffold0005 (169-305)||(250579-250721)
scaffold0005 (325-367)||(250743-250785)
[»] chr4 (26 HSPs)
chr4 (169-305)||(14566654-14566796)
chr4 (171-273)||(24958258-24958360)
chr4 (174-298)||(47519115-47519238)
chr4 (169-303)||(31360724-31360857)
chr4 (203-302)||(23054947-23055046)
chr4 (176-262)||(3914916-3915002)
chr4 (169-259)||(34227681-34227771)
chr4 (171-301)||(6409314-6409447)
chr4 (171-260)||(51407782-51407871)
chr4 (171-222)||(52721863-52721914)
chr4 (169-262)||(8817138-8817231)
chr4 (171-303)||(53201582-53201712)
chr4 (171-214)||(24784890-24784933)
chr4 (171-214)||(24823333-24823376)
chr4 (325-367)||(14566590-14566632)
chr4 (176-262)||(23532904-23532990)
chr4 (177-262)||(12887838-12887923)
chr4 (175-247)||(2181144-2181216)
chr4 (176-260)||(3925946-3926030)
chr4 (176-260)||(39051741-39051824)
chr4 (176-220)||(50589126-50589170)
chr4 (325-368)||(53201733-53201776)
chr4 (247-301)||(19657758-19657812)
chr4 (174-222)||(39958196-39958244)
chr4 (176-260)||(50626521-50626604)
chr4 (174-262)||(55728145-55728233)
[»] scaffold0341 (1 HSPs)
scaffold0341 (183-301)||(6105-6223)
[»] scaffold0009 (1 HSPs)
scaffold0009 (183-301)||(53790-53908)
[»] chr6 (11 HSPs)
chr6 (175-271)||(21880758-21880853)
chr6 (169-295)||(1869250-1869374)
chr6 (176-258)||(34503405-34503486)
chr6 (189-305)||(34214057-34214174)
chr6 (197-263)||(20739951-20740017)
chr6 (171-255)||(24046002-24046085)
chr6 (175-229)||(13032350-13032404)
chr6 (175-216)||(32018611-32018652)
chr6 (326-368)||(20740077-20740119)
chr6 (174-230)||(22577308-22577364)
chr6 (171-259)||(22696096-22696183)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 15 - 381
Target Start/End: Original strand, 34659426 - 34659800
Alignment:
Q  15 aaaacctaaataatcaagtgatatatcatggtgtcatttgattatatatgaagnnnnnnnngagagatgattatatatgaagttgttttacaataacatt 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||    
T  34659426 aaaaactaaataatcaagtgatatatcatggtgtcatttgattatatatgaagttttttttgagagatgattatatatgaagttgttttacaataacatt 34659525  T
Q  115 gcatataaattaaactcttaaaaatatttaatatattgatattgnnnnnnnnggaaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||        | ||||||||||||||||||||||||||| |||||||||| |||||||    
T  34659526 gcatataaattaaactcttaaaaatatttaatatattgatattgtttttttcgaaaaagctaaaatgaaatttattaaaatcgcaatgaatcttaaccag 34659625  T
Q  215 cataaggag---tgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagctcccaatggaaaac----tcatacacccgtgaatcga 307  Q
    ||  |||||   || ||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||     ||||||||||||||||||    
T  34659626 cacgaggagtgctgctaggttaggagtcttaaagtagcaacatacaaaggatagatgaggagctcccaatagaaaacccatacatacacccgtgaatcga 34659725  T
Q  308 ag-nnnnnnnnnnnnnnncctataggaaacgcctcctaacaaagggctaactctgaaatcaagctaacaacacga 381  Q
    ||                | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34659726 agaaaaaaatccaaaaaacatataggaaacgcctcctaacaaaggactaactctgaaatcaagctaacaacacga 34659800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 17374629 - 17374764
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||| ||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||| | || ||||||||||| ||||| ||||||||||||||||    
T  17374629 aaaaactaaaatgaaatttattaaaatcacaatgaatcttaaccagcacaaggagtgttaagctaggagtcttaaag-agcaatatacaaaggatagatg 17374727  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    |||||| || |||| ||||||||||||||||||||||    
T  17374728 gggagcccctaatgaaaaactcatacacccgtgaatc 17374764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 4868943 - 4869079
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||| |||||||||||||||||||||| | |||||||| ||| ||||| |||||||| |||| || |||||||||||||||||||||||||||||||| |    
T  4868943 aaaaactaaaatgaaatttattaaaatcgaaatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaaggatagacg 4869042  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    |||||| |||||| |||||  | |||||| |||||||    
T  4869043 gggagcccccaattgaaaatccttacacctgtgaatc 4869079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 304
Target Start/End: Complemental strand, 11163842 - 11163708
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||| |||||||| |||||||||| || || ||||||| ||||||| | | |||||| ||||||| |||||||||||||| |||||| ||||||||||||    
T  11163842 aaaaactaaaatggaatttattaacatcgcgatgaatcttaaccagtacagggagtgctaggttaggagtcttaaagtagtaacatataaaggatagatg 11163743  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaat 304  Q
     | || | |||||| |||||||||||||||||||||    
T  11163742 agaagat-ccaatgaaaaactcatacacccgtgaat 11163708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 1552381 - 1552249
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||  |||||||||| || |||||||||| |||| |||| |||||||| |||| ||||||||||| |||||||||| ||||||||| | ||    
T  1552381 aaaagttaaaatagaatttattaagatagcaatgaatcttaacgagcacaaggagtgctaggctaagagtcttacagtagcaacaaacaaaggat-ggtg 1552283  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaa 303  Q
    || |||||||||| |||||| ||||||||| ||||    
T  1552282 ggaagctcccaat-gaaaacccatacacccatgaa 1552249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 17282727 - 17282600
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagc 274  Q
    ||||||| |||||||||| ||  |||| |||| ||||||||| || ||||| |||| || ||||||||  ||||||||| ||||||||| |||||| |||    
T  17282727 taaaatggaatttattaagataacaattaatcttaaccagcacaaagagtgctaggctaggagtcttacggtagcaacaaacaaaggat-gatgggaagc 17282629  T
Q  275 tcccaatggaaaactcatacacccgtgaa 303  Q
     ||||||| ||||||||||||||||||||    
T  17282628 ccccaatgtaaaactcatacacccgtgaa 17282600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 1894739 - 1894833
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggat 263  Q
    ||||||||||||  |||||||||| || |||||||||  ||||||||| ||||||||||||| || ||||||||  ||||||||| |||||||||    
T  1894739 aaaagctaaaatagaatttattaagatagcaatgaattttaaccagcacaaggagtgttaggctaggagtcttacggtagcaacaaacaaaggat 1894833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 296
Target Start/End: Complemental strand, 33417203 - 33417083
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagct 275  Q
    |||||| ||||||||||| |  |  ||||||||||| | || |||||||||| || | |||||| |||||||||||||||||||||||| |||| | ||     
T  33417203 aaaatggaatttattaaagtcaccgtgaatcctaactaacacaaggagtgttgggcttagagtcgtaaagtagcaacatacaaaggatatatggagtgca 33417104  T
Q  276 cccaatggaaaactcatacac 296  Q
    | ||||||||||| |||||||    
T  33417103 ctcaatggaaaacccatacac 33417083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Original strand, 5050975 - 5051035
Alignment:
Q  202 gaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    ||||||| ||||||| ||||| || ||||||||||||| ||||||||||||||||||||||    
T  5050975 gaatcctgaccagcacaaggaatgataggttaagagtcgtaaagtagcaacatacaaagga 5051035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 30799263 - 30799323
Alignment:
Q  170 aaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttagg 230  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||| ||| |||||||||    
T  30799263 aaagttaaaatgaaatttattaaaatcgcaatgaatcttaaccagcacaagaagtgttagg 30799323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 368
Target Start/End: Complemental strand, 17282579 - 17282536
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  17282579 cctataggaaacgcctcctaacaaagggctatctccgaaatcaa 17282536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 3258135 - 3258071
Alignment:
Q  198 caatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||||| |||||||||||| ||||| || ||| ||| |||||  |||||||||||||||||||||    
T  3258135 caatgactcctaaccagcacaaggaatgctagattaggagtccaaaagtagcaacatacaaagga 3258071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 6186930 - 6186842
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaa 259  Q
    |||||||||||||||||||| ||| ||||| |||||||| | |||| ||| | || |||  || || ||||||||||| ||||||||||    
T  6186930 aagctaaaatgaaatttattcaaaatgcaaagaatcctagcgagcacaagcaatgctagactaggaatcttaaagtagaaacatacaaa 6186842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 4869100 - 4869143
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    |||||||||||||||||||| |||||||| | ||||||||||||    
T  4869100 cctataggaaacgcctcctagcaaagggccatctctgaaatcaa 4869143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Complemental strand, 1552227 - 1552185
Alignment:
Q  326 ctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||    
T  1552227 ctataagaaacgcctcctaacaaagggctatctccgaaatcaa 1552185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 30799326 - 30799371
Alignment:
Q  259 aggatagatggggagctcccaatggaaaactcatacacccgtgaat 304  Q
    |||||||||||||||| |||||| |||||||||||| | |||||||    
T  30799326 aggatagatggggagcccccaatagaaaactcatactctcgtgaat 30799371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 36592515 - 36592591
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagta 247  Q
    ||||||||||| |||||||||||||   | |||||||||||||||| ||||| || |||  || ||||| |||||||    
T  36592515 aagctaaaatggaatttattaaaatcaaagtgaatcctaaccagcacaaggaatgctagactaggagtcgtaaagta 36592591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 20860612 - 20860748
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||  | ||||||||||||||||||||||||||||||||||    
T  20860612 aaaagttaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgttaggcgaggagtcttaaagtagcaacatacaaaggatagatg 20860711  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    ||||||||||||||||||||||||||||  |||||||    
T  20860712 gggagctcccaatggaaaactcatacacaagtgaatc 20860748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 169 - 301
Target Start/End: Original strand, 5993937 - 5994069
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||||||||||| ||||||||||||| |||||||||| ||| ||||| |||||||| |||| || ||||||||||||||||||||||||||||||||||    
T  5993937 aaaagctaaaatggaatttattaaaatcgcaatgaatcttaatcagcacaaggagtgctaggctaggagtcttaaagtagcaacatacaaaggatagatg 5994036  T
Q  269 gggagctcccaatggaaaactcatacacccgtg 301  Q
    |||| |  |||||||||||| ||||||||||||    
T  5994037 gggaacctccaatggaaaacccatacacccgtg 5994069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 10408139 - 10408275
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||| |||||||||||||  |||| |||| ||||||||| ||||||||||||| ||  ||||||| ||| ||||||||||||| |||||||    
T  10408139 aaaagataaaatggaatttattaaaatcacaataaatcttaaccagcaaaaggagtgttaggctagaagtcttagagttgcaacatacaaagcatagatg 10408238  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    |||||| ||||||||||||| ||||||||| ||||||    
T  10408239 gggagcccccaatggaaaacccatacacccatgaatc 10408275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 6443326 - 6443429
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggg 270  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||||| |||| || ||||||||  ||||||||||||||| ||||||||||    
T  6443326 aagctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggagtgctaggctaggagtcttatcgtagcaacatacaaatgatagatggg 6443425  T
Q  271 gagc 274  Q
    ||||    
T  6443426 gagc 6443429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 13995570 - 13995463
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagc 274  Q
    |||||| |||||||||||||| ||||||| |||||| ||||| |||  ||| ||||| | || |  |||| || ||||||||||| ||||||||||||||    
T  13995570 taaaatcaaatttattaaaatcgcaatgagtcctaatcagcacaagaggtgctaggtcaggatttgtaaaataacaacatacaaatgatagatggggagc 13995471  T
Q  275 tcccaatg 282  Q
     |||||||    
T  13995470 ccccaatg 13995463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 20516253 - 20516336
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaa 259  Q
    |||||| |||||||||||||  || |||||||||||||||| ||||| || |||  |||||||| || ||||||||||||||||    
T  20516253 aaaatggaatttattaaaatcacattgaatcctaaccagcacaaggaatgctagactaagagtcgtagagtagcaacatacaaa 20516336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 40413101 - 40413044
Alignment:
Q  172 agctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttag 229  Q
    ||||||||||||||||||||||||   | |||||||||||||||| ||||| ||||||    
T  40413101 agctaaaatgaaatttattaaaatcatagtgaatcctaaccagcacaaggaatgttag 40413044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 10181590 - 10181679
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||||||||||||||||||| |||   ||| |||||||||| || ||||| | ||||| | |||||| ||||||  ||||||||||||||||    
T  10181590 aagctaaaatgaaatttattgaaaacacaaagaatcctaacaagtataagaaatgttaagctaagagacttaaa--agcaacatacaaagga 10181679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 8170664 - 8170715
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||   ||| |||||||||||||| |||||    
T  8170664 aagctaaaatgaaatttattaaaatcataataaatcctaaccagcacaagga 8170715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 38149962 - 38149911
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||  || ||||| |||||||||| |||||    
T  38149962 aagctaaaatgaaatttattaaaatcacagtgaattctaaccagcacaagga 38149911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 171 - 301
Target Start/End: Complemental strand, 11408592 - 11408462
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggg 270  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||| |||    
T  11408592 aagctaaaatggaatttattaaaattgcaatgaatcataaccagcacaaggagtgctaggttatgagtcttaaagtagtaacatacaaaggatagacggg 11408493  T
Q  271 gagctcccaatggaaaactcatacacccgtg 301  Q
    |||| ||||||| ||||||||||||||||||    
T  11408492 gagcccccaatgaaaaactcatacacccgtg 11408462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 615054 - 615190
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||| ||||||||||||| | |||||||| |||| |||| ||| |||| || | || ||||||||||||||||||||||||||||||||||    
T  615054 aaaagttaaaatggaatttattaaaatcgaaatgaatcttaactagcacaagaagtgctatgctaggagtcttaaagtagcaacatacaaaggatagatg 615153  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    |||||| ||||||||||||  ||||||||||||||||    
T  615154 gggagcccccaatggaaaatccatacacccgtgaatc 615190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 27340388 - 27340256
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||| |||||||||||||||||||||| |||||||||||||||| ||| || ||||| |||  || ||||||||||||||||||||| ||||||||||||    
T  27340388 aaaaactaaaatgaaatttattaaaatggcaatgaatcctaaccggcacaaagagtgctagactacgagtcttaaagtagcaacataaaaaggatagatg 27340289  T
Q  269 gggagctcccaatggaaaactcatacacccgtg 301  Q
    || |||   ||||||||||||||||||| ||||    
T  27340288 ggaagccttcaatggaaaactcatacactcgtg 27340256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 183 - 301
Target Start/End: Complemental strand, 6504540 - 6504422
Alignment:
Q  183 aatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagctcccaatg 282  Q
    |||||||||||||  |||||||| ||||| |||| ||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  6504540 aatttattaaaatcacaatgaattctaactagcacaaggagtgttaggctatgagtcttaatgtagcaacatataaaggatagatggggagcccccaatg 6504441  T
Q  283 gaaaactcatacacccgtg 301  Q
    |||||| |||||| |||||    
T  6504440 gaaaacccatacatccgtg 6504422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 34117413 - 34117549
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||||||||||||||||||||||||   |||| |||| ||||||||| |||||||| || | ||||||||||| | |||||||||||||||||||||||    
T  34117413 aaaagctaaaatgaaatttattaaaaccacaattaatcttaaccagcacaaggagtgctaagctaagagtcttacaatagcaacatacaaaggatagatg 34117512  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    || ||| | |||||||| || |||||| |||| ||||    
T  34117513 ggaagccctcaatggaagacccatacaaccgtaaatc 34117549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 34653204 - 34653340
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||| ||||||||||||| |||||||||| |||| || | |||||||| || | |   ||||||||| ||| |||| ||||||||||||||    
T  34653204 aaaagttaaaatggaatttattaaaatcgcaatgaatcttaacgagtacaaggagtgctacgcttgaagtcttaaaatagtaacaaacaaaggatagatg 34653303  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatc 305  Q
     ||||  | ||||| ||||||||||||||||||||||    
T  34653304 aggagtcctcaatgaaaaactcatacacccgtgaatc 34653340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 305
Target Start/End: Complemental strand, 39709762 - 39709674
Alignment:
Q  218 aaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatgg-ggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    |||||||| |||| |  ||||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||| |||||||||||    
T  39709762 aaggagtgctaggcttggagtcttaaagtagcaacatacaaaagatagatggaggagccccaaatggaaaactcatatacccgtgaatc 39709674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 14351850 - 14351759
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||||||||||||||||||| ||| ||||| |||||||| | |||| ||||| || |||  || || |||||||||||||||||||||||||    
T  14351850 aagctaaaatgaaatttattcaaaatgcaaagaatcctagcgagcacaaggaatgctagactaggaatcttaaagtagcaacatacaaagga 14351759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 303
Target Start/End: Original strand, 25790952 - 25791084
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||||||||||||||||||||||| ||  |||| | || ||||||||| ||||||||  |||||| ||||||| |||| |||||| ||||| ||| ||||    
T  25790952 aaaagctaaaatgaaatttattaagataacaataattcttaaccagcacaaggagtgccaggttaggagtctt-aagttgcaacaaacaaatgat-gatg 25791049  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaa 303  Q
    |  | | | ||||||||||| ||||||||||||||    
T  25791050 gaaaaccctcaatggaaaacccatacacccgtgaa 25791084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 39629186 - 39629274
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaa 259  Q
    ||||||||||| |||||||||||||  |||||| |||||||||||| ||||| || ||| | |  |||| |||||||||||||||||||    
T  39629186 aagctaaaatggaatttattaaaatcacaatgattcctaaccagcacaaggaatgctagatcagaagtcgtaaagtagcaacatacaaa 39629274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 15123900 - 15123858
Alignment:
Q  174 ctaaaatgaaatttattaaaattgcaatgaatcctaaccagca 216  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  15123900 ctaaaatgaaatttattaaaatcccaatgaatcctaaccagca 15123858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 15148088 - 15148046
Alignment:
Q  174 ctaaaatgaaatttattaaaattgcaatgaatcctaaccagca 216  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  15148088 ctaaaatgaaatttattaaaatcccaatgaatcctaaccagca 15148046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 11814173 - 11814265
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||||||||||||||||||||| |||  |||| |||||||||| |||| |||||  | | || || ||| |||||| |||||||||||||||||    
T  11814173 aaaagctaaaatgaaatttattcaaaacgcaaagaatcctaacaagcagaaggaaagcttggctaggagacttaaa-tagcaacatacaaagga 11814265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 47896356 - 47896441
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||||||||||||||| ||| | ||| |||||||| | |||||||||| ||||| ||||  || ||||||  ||||||||||||||    
T  47896356 taaaatgaaatttatttaaaatacaaagaatcctagcaagcataaggaatgttaagttagaagacttaaaagagcaacatacaaag 47896441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 10494322 - 10494412
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||||||||||||||||||| |||  |||| |||||||| | |||| ||||| |||  || || ||| |||||| |||||||||||||||||    
T  10494322 aagctaaaatgaaatttattcaaaacgcaaagaatcctagcaagcacaaggaatgtctggctaggagacttaaa-tagcaacatacaaagga 10494412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 15115690 - 15115649
Alignment:
Q  174 ctaaaatgaaatttattaaaattgcaatgaatcctaaccagc 215  Q
    |||||||| |||||||||||||  ||||||||||||||||||    
T  15115690 ctaaaatggaatttattaaaatcacaatgaatcctaaccagc 15115649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 15140206 - 15140165
Alignment:
Q  174 ctaaaatgaaatttattaaaattgcaatgaatcctaaccagc 215  Q
    |||||||| |||||||||||||  ||||||||||||||||||    
T  15140206 ctaaaatggaatttattaaaatcacaatgaatcctaaccagc 15140165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Original strand, 49098092 - 49098172
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaa 251  Q
    |||| ||||||||||||||||||||   | ||| | || |||||||||| |||||||||| || | ||| |||||||||||    
T  49098092 aagcaaaaatgaaatttattaaaatcatagtgagttctgaccagcataaagagtgttagggtaggcgtcataaagtagcaa 49098172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 7269968 - 7270108
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||| ||||| || |||| || |||||||||||||||||||||||||||||||||     
T  7269968 aaaagctaaaataaaatttattaaaatcgcaatgaatcttaaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaaggatagata 7270067  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatcgaag 309  Q
    |||||  |||||||||||| |||||||||||||||||||||    
T  7270068 gggagtccccaatggaaaattcatacacccgtgaatcgaag 7270108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 175 - 305
Target Start/End: Complemental strand, 6031126 - 6030995
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaa-gtagcaacatacaaaggatagatggggag 273  Q
    ||||||||||||||||||||| | |||||||| ||||||||| || |||||||||| ||  ||||||||| |||| ||||||||||||||||| ||||||    
T  6031126 taaaatgaaatttattaaaatcgaaatgaatcttaaccagcacaaagagtgttaggctataagtcttaaaagtagtaacatacaaaggatagacggggag 6031027  T
Q  274 ctcccaatggaaaactcatacacccgtgaatc 305  Q
    ||||||||||||||| ||||||||||||||||    
T  6031026 ctcccaatggaaaacccatacacccgtgaatc 6030995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 26656041 - 26656184
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||| | || |||| || ||||||||||||| ||| ||||||||||||||||    
T  26656041 aaaaggtaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctaggctaggagtcttaaagtatcaatatacaaaggatagatg 26656140  T
Q  269 gggagctcccaa---tggaaaactcatacacccgtgaatcgaag 309  Q
    |||||| || ||   |||||||||||||||||||||||||||||    
T  26656141 gggagcccctaatattggaaaactcatacacccgtgaatcgaag 26656184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 26927628 - 26927771
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||| ||||||||||||| |||||||||| ||||||||| ||| | || |||| || ||||||||||||| ||| ||||||||||||||||    
T  26927628 aaaaggtaaaatggaatttattaaaatcgcaatgaatcttaaccagcacaagcaatgctaggctaggagtcttaaagtatcaatatacaaaggatagatg 26927727  T
Q  269 gggagctcccaa---tggaaaactcatacacccgtgaatcgaag 309  Q
    |||||| || ||   |||||||||||||||||||||||||||||    
T  26927728 gggagcccctaatattggaaaactcatacacccgtgaatcgaag 26927771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 1377541 - 1377676
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| |||||||||||||||| |||| ||||| |||| ||||||||| ||||| |||||||||| ||||||||||||| ||||||||||| ||||||||    
T  1377541 aaaagttaaaatgaaatttattcaaatcgcaattaatcttaaccagcacaaggaatgttaggttaggagtcttaaagtaacaacatacaaatgatagatg 1377640  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    ||||| ||| ||||||| || ||||||||| ||||||    
T  1377641 gggag-tcctaatggaagacccatacacccatgaatc 1377676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 27170921 - 27170797
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||||| ||||||||||| |||||||||| ||||||||| |||||||| |||| || |||||||||| |||||||||||||||||||||||    
T  27170921 aaaagttaaaatgaa-tttattaaaatcgcaatgaatcttaaccagcacaaggagtgataggctaggagtcttaaa-tagcaacatacaaaggatagatg 27170824  T
Q  269 gggagctcccaatggaaaactcataca 295  Q
    |||||| | ||||||||||| ||||||    
T  27170823 gggagccctcaatggaaaacccataca 27170797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 173 - 303
Target Start/End: Original strand, 21600515 - 21600646
Alignment:
Q  173 gctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggtta--agagtcttaaagtagcaacatacaaaggatagatggg 270  Q
    ||||||||| |||||||||| || |||||||||| ||||||| | ||||||||||||| ||  |||||||||  ||||||||| ||||| ||| ||||||    
T  21600515 gctaaaatggaatttattaagatagcaatgaatcttaaccagtacaaggagtgttaggctatgagagtcttaccgtagcaacaaacaaatgat-gatggg 21600613  T
Q  271 gagctcccaatggaaaactcatacacccgtgaa 303  Q
     ||| ||||||||||||| ||||||||||||||    
T  21600614 aagcccccaatggaaaacccatacacccgtgaa 21600646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 303
Target Start/End: Original strand, 6989154 - 6989287
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||| |||||||  |||||||||| || |||||||||| |||||| ||||||||||| |||||||   |||||| |||||||||| ||||||||| ||||    
T  6989154 aaaacctaaaatagaatttattaagatagcaatgaatcttaaccaacataaggagtgctaggttagaggtcttacagtagcaacaaacaaaggat-gatg 6989252  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaa 303  Q
    || ||  ||||||| |||||||||||||| |||||    
T  6989253 ggaagtccccaatgaaaaactcatacacctgtgaa 6989287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 18696319 - 18696443
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| ||| || ||| |||||| || |||| ||| | ||||||||| |||| ||||||||    
T  18696319 aaaagctaaaatgaaatttattaaaatggcaatgaatcttaaccggcacaacgagagttaggctaggagttttacaatagcaacatgcaaacgatagatg 18696418  T
Q  269 gggagctcccaatggaaaactcata 293  Q
    || | |  | |||||||||||||||    
T  18696419 ggaaacctctaatggaaaactcata 18696443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 38959391 - 38959301
Alignment:
Q  170 aaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||||||||||| |||||||||| || |||||||||| |||| |||| |||||||| |||| ||||||||||| |||||||||| ||||||    
T  38959391 aaagctaaaatggaatttattaagatagcaatgaatcttaactagcacaaggagtgctaggctaagagtcttacagtagcaacaaacaaag 38959301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 262
Target Start/End: Complemental strand, 27632728 - 27632642
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    ||||||||||||||||||||  |||||||||||| || ||||||||| |  ||  ||| || || ||||||||||||||||||||||    
T  27632728 aaaatgaaatttattaaaatcacaatgaatcctatccggcataaggaatactaaattatgaatcgtaaagtagcaacatacaaagga 27632642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 12155743 - 12155832
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||||||||||||||||||| ||| ||||| |||||||| | | || ||||| || |||  || || |||||||||||||||||||||||    
T  12155743 aagctaaaatgaaatttattcaaaatgcaaagaatcctagcgatcacaaggaatgctagactaggaatcttaaagtagcaacatacaaag 12155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 7270126 - 7270169
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    ||||||||||||||  ||||||||||||||||||||||||||||    
T  7270126 cctataggaaacgcaacctaacaaagggctaactctgaaatcaa 7270169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 26656201 - 26656244
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  26656201 cctataggaaacgcctcctaacaaaggactaactccgaaatcaa 26656244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 26927788 - 26927831
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  26927788 cctataggaaacgcctcctaacaaaggactaactccgaaatcaa 26927831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 30776968 - 30777019
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||  |||| |||||||||||||| |||||    
T  30776968 aagctaaaatgaaatttattaaaatcacaattaatcctaaccagcacaagga 30777019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 9435992 - 9436069
Alignment:
Q  183 aatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||||||||||||  ||| ||||| |||||| |||||||| |||||  ||| ||||| ||||||||||||||| ||||    
T  9435992 aatttattaaaatcacaaagaatcttaaccaacataaggaatgttatattaggagtcgtaaagtagcaacatataaag 9436069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 36608392 - 36608315
Alignment:
Q  183 aatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||||||||||||   |||||||||||||||||| ||||| ||||||  ||| |||  ||||||||||||||| ||||    
T  36608392 aatttattaaaatcagaatgaatcctaaccagcacaaggaatgttagactaaaagttataaagtagcaacatataaag 36608315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 41357005 - 41356932
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtctta 242  Q
    |||||||||||||||||||||||| ||  ||||||||| ||| |||||  ||||||| |||| || ||||||||    
T  41357005 aaaagctaaaatgaaatttattaagataacaatgaatcttaatcagcacgaggagtgctaggctaggagtctta 41356932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 6989307 - 6989350
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||    
T  6989307 cctataggaaacgtctcctaacaaagggctatctccgaaatcaa 6989350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 355
Target Start/End: Complemental strand, 38959240 - 38959210
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggcta 355  Q
    |||||||||||||||||||||||||||||||    
T  38959240 cctataggaaacgcctcctaacaaagggcta 38959210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 6030973 - 6030932
Alignment:
Q  327 tataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    |||||||||||||||||| |||||||| | ||||||||||||    
T  6030973 tataggaaacgcctcctagcaaagggccatctctgaaatcaa 6030932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 33757694 - 33757747
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||| |||||| |||||||||||||  |||| | ||||||||||||||||||    
T  33757694 aaaagcaaaaatggaatttattaaaatcacaataactcctaaccagcataagga 33757747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 3364297 - 3364165
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| || |||||||||||||||||    
T  3364297 aaaagataaaatggaatttattaaaattgcaatgaatcttaaccagcacaaggagtgttaggttatgagtcttaaagtaacagcatacaaaggatagatg 3364198  T
Q  269 gggagctcccaatggaaaactcatacacccgtg 301  Q
     ||||| ||||||| |||||||||||| |||||    
T  3364197 aggagcccccaatgaaaaactcatacatccgtg 3364165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 296
Target Start/End: Original strand, 43275264 - 43275391
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||| |||  || ||||| |||||||||||||||||||||||||| |    
T  43275264 aaaagctagaatgaaatttattaaaatcgcaatgaatcttaatcagcataaggagtgctagcctaggagtcataaagtagcaacatacaaaggatagaag 43275363  T
Q  269 gggagctcccaatggaaaactcatacac 296  Q
    |||||| || |||||||||  |||||||    
T  43275364 gggagccccaaatggaaaatccatacac 43275391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 893761 - 893663
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagat 267  Q
    ||||||||||||| ||||||||||||| ||||| |||| ||||||||| |||||||| |||| || |||||||||||||| |||||||||| |||||||    
T  893761 aaaagctaaaatggaatttattaaaatcgcaataaatcttaaccagcacaaggagtgctaggctaggagtcttaaagtagaaacatacaaatgatagat 893663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 368
Target Start/End: Complemental strand, 18270515 - 18270320
Alignment:
Q  172 agctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatgggg 271  Q
    |||||||||| ||||||||||||||| |||||||| ||||| | | ||| | || |||| |  |||| ||||| ||| ||||||||||||||||||||||    
T  18270515 agctaaaatggaatttattaaaattgaaatgaatcttaaccggtacaagaaatgctaggctgtgagttttaaa-tagtaacatacaaaggatagatgggg 18270417  T
Q  272 agctcccaatggaaaactcatacacccgtgaatcgaagnnnnnnnnnnnnnnncctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
     ||  |||||| ||||| |||||||||||||||| |||               |||||||||||||||||||| ||||| |||| ||||||||||||    
T  18270416 tgcctccaatgaaaaacccatacacccgtgaatcaaagaaaaaatccaaaaaacctataggaaacgcctcctagcaaagagctatctctgaaatcaa 18270320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 270
Target Start/End: Complemental strand, 27741919 - 27741820
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggg 270  Q
    |||| ||||||||||||||||||||  |||||| || | || | || |||||||| ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  27741919 aagccaaaatgaaatttattaaaatcacaatgagtcatgactatcacaaggagtgctaggttaggagtcgtaaagtagcaacatacaaaagatagatggg 27741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 368
Target Start/End: Complemental strand, 893590 - 893549
Alignment:
Q  327 tataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  893590 tataggaaacgcctcctaacaaagggctatctctgaaatcaa 893549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 2566829 - 2566880
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||  |||||||||||||||| || |||||    
T  2566829 aagctaaaatgaaatttattaaaatcacaatgaatcctaaccaacacaagga 2566880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 20585598 - 20585547
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||  ||||||||| ||||||||| |||||    
T  20585598 aagctaaaatgaaatttattaaaatcacaatgaatcttaaccagcacaagga 20585547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 238
Target Start/End: Complemental strand, 50735441 - 50735378
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagt 238  Q
    ||||||| | |||||||||||||||||||||| ||||||||| || ||||| |||| |||||||    
T  50735441 taaaatggagtttattaaaattgcaatgaatcttaaccagcaaaatgagtgctaggctaagagt 50735378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 238
Target Start/End: Original strand, 50777414 - 50777477
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagt 238  Q
    ||||||| | |||||||||||||||||||||| ||||||||| || ||||| |||| |||||||    
T  50777414 taaaatggagtttattaaaattgcaatgaatcttaaccagcaaaatgagtgctaggctaagagt 50777477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 260
Target Start/End: Complemental strand, 52984956 - 52984871
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||||||||||||||| |||  | || ||||  |||| |||||||||| || ||| ||| || |||||||||| ||||||||||||    
T  52984956 taaaatgaaatttattcaaaacgtaaagaattttaacgagcataaggaatgctagattaggaatcttaaagtaacaacatacaaag 52984871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 3301738 - 3301875
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcct-aaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagat 267  Q
    ||||| ||||||||||||||||||||| |||||||||| | |||||||| ||||||| ||| | ||  |||||||||||||||||||| ||| |||||||    
T  3301738 aaaagttaaaatgaaatttattaaaatcgcaatgaatctttaaccagcacaaggagtattaaggtagaagtcttaaagtagcaacatataaatgatagat 3301837  T
Q  268 ggggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    |||||||||| |||||||||| |||||||| |||||||    
T  3301838 ggggagctcctaatggaaaacccatacacctgtgaatc 3301875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 169 - 293
Target Start/End: Original strand, 1777892 - 1778012
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||||||||||| ||||| ||||||||  |||||||| |||||||||||||||||| || | |||||||    |||||||||||||||||| |||||||    
T  1777892 aaaagctaaaatggaatttcttaaaattcaaatgaatcttaaccagcataaggagtgctaagctaagagt----aagtagcaacatacaaagaatagatg 1777987  T
Q  269 gggagctcccaatggaaaactcata 293  Q
    |||||| ||||||||||||| ||||    
T  1777988 gggagcccccaatggaaaacccata 1778012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 169 - 274
Target Start/End: Original strand, 29549910 - 29550015
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||| ||||||| |||||||||||||| |||||||||| ||||| | |||| |||||||  | || ||||||||||||||||||||| ||||||||||||    
T  29549910 aaaaactaaaataaaatttattaaaatcgcaatgaatcttaaccggtataaagagtgtttcgctaggagtcttaaagtagcaacatataaaggatagatg 29550009  T
Q  269 gggagc 274  Q
    | ||||    
T  29550010 gagagc 29550015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 11699137 - 11699043
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggat 263  Q
    |||| |||||||| ||||||| || ||  ||||||||| |||||  || |||||||| |||||||||||||||| |||||||||| |||||||||    
T  11699137 aaaaactaaaatggaatttatgaagataacaatgaatcttaaccgccacaaggagtgctaggttaagagtcttatagtagcaacaaacaaaggat 11699043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 26199187 - 26199273
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||||| |||||||||||||| |||||||||||||| |||| ||||| || |||  || ||||| ||||||||||| ||||||||||    
T  26199187 aaaatggaatttattaaaattacaatgaatcctaacaagcacaaggaatgctagactaggagtcgtaaagtagcaatatacaaagga 26199273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 39020940 - 39020870
Alignment:
Q  235 gagtcttaaagtagcaacatacaaaggatagatggggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    ||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||  |||||||    
T  39020940 gagtcgtaaagtagcaacgtacaaaggatagatgtggagcccccaatggaaaactgatacacatgtgaatc 39020870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 21321599 - 21321530
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaa 244  Q
    ||||||||||||||||||||   |||||||||||| | |||| |||||||| ||||||||||||||||||    
T  21321599 taaaatgaaatttattaaaaacacaatgaatcctacctagcacaaggagtgataggttaagagtcttaaa 21321530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 5893459 - 5893367
Alignment:
Q  171 aagctaaaatgaaattt-attaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    ||||||| ||||||||| ||||||||  ||||||||||||||||||| ||||| |  |||  || ||||| ||||||||||||||||||||||    
T  5893459 aagctaatatgaaattttattaaaatcacaatgaatcctaaccagcacaaggaatactagaataggagtcgtaaagtagcaacatacaaagga 5893367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 36933794 - 36933882
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaa 259  Q
    |||| |||||| |||||||||||||  |||||||||||||| |||| ||||| || |||| || ||||| ||||||||||| |||||||    
T  36933794 aagccaaaatggaatttattaaaatcacaatgaatcctaactagcacaaggaatgctaggataggagtcgtaaagtagcaaaatacaaa 36933882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 15121999 - 15121908
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||| ||||||||||||||||||||  ||| ||||||| ||||||| ||||| || |||  || ||||| ||| ||||||||||||||||||    
T  15121999 aagccaaaatgaaatttattaaaatcacaaagaatcctgaccagcacaaggaatgctagactaggagtcgtaaggtagcaacatacaaagga 15121908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 47718829 - 47718880
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  47718829 aagctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagga 47718880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 19289695 - 19289801
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagc 274  Q
    ||||||| |||||||||||||  |||||| |||| ||||||| |||  ||| ||||  | ||||| |||| |||||||||||||| |||||||||||| |    
T  19289695 taaaatggaatttattaaaatcacaatgagtcctgaccagcacaagaggtgctaggccaggagtcgtaaaatagcaacatacaaatgatagatggggatc 19289794  T
Q  275 tcccaat 281  Q
     ||||||    
T  19289795 acccaat 19289801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 9249869 - 9249920
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||  |||| |||||||||||||| |||||    
T  9249869 aagctaaaatgaaatttattaaaatcacaattaatcctaaccagcacaagga 9249920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 9283419 - 9283470
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||  |||| |||||||||||||| |||||    
T  9283419 aagctaaaatgaaatttattaaaatcacaattaatcctaaccagcacaagga 9283470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 3959175 - 3959054
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagct 275  Q
    ||||||||||||||||||||  ||||||||||| ||||||| ||| |||| |||| || |||||    | |||||| ||||||| || ||||||||| |     
T  3959175 aaaatgaaatttattaaaatcacaatgaatcctgaccagcacaagaagtgctagggtaggagtc----aatagcaaaatacaaatgagagatggggaaca 3959080  T
Q  276 cccaatggaaaactcatacacccgtg 301  Q
    |||||  | |||| |||||| |||||    
T  3959079 cccaaatgtaaacacatacatccgtg 3959054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 222
Target Start/End: Complemental strand, 25970060 - 25970013
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||  |||| |||||||||||||| |||||    
T  25970060 taaaatgaaatttattaaaatcacaattaatcctaaccagcacaagga 25970013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 250579 - 250721
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataag------gagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    ||||||||||||  ||| ||||||||| |||||||||| ||||||||| |||      ||||| ||||||| |||||||||| |||||||||||||| ||    
T  250579 aaaagctaaaatagaatgtattaaaatcgcaatgaatcttaaccagcacaagcacaaggagtgctaggttaggagtcttaaaatagcaacatacaaatga 250678  T
Q  263 tagatggggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  250679 tagatggggagcccccaatggaaacctcatacacccgtgaatc 250721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 367
Target Start/End: Original strand, 250743 - 250785
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatca 367  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  250743 cctataggaaacgcctcctaacaaagggctatctccgaaatca 250785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 305
Target Start/End: Complemental strand, 14566796 - 14566654
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataag------gagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    ||||||||||||  ||| ||||||||| |||||||||| ||||||||| |||      ||||| ||||||| |||||||||| |||||||||||||| ||    
T  14566796 aaaagctaaaatagaatgtattaaaatcgcaatgaatcttaaccagcacaagcacaaggagtgctaggttaggagtcttaaaatagcaacatacaaatga 14566697  T
Q  263 tagatggggagctcccaatggaaaactcatacacccgtgaatc 305  Q
    |||||||||||| ||||||||||| ||||||||||||||||||    
T  14566696 tagatggggagcccccaatggaaacctcatacacccgtgaatc 14566654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 24958360 - 24958258
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggg 270  Q
    |||| |||||| |||||||||||||||||||||||||| ||||||| ||||| || |||| || ||||||||||||||||||||||||||||||||||||    
T  24958360 aagcgaaaatggaatttattaaaattgcaatgaatcctgaccagcacaaggaatgctaggctaggagtcttaaagtagcaacatacaaaggatagatggg 24958261  T
Q  271 gag 273  Q
    |||    
T  24958260 gag 24958258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 47519238 - 47519115
Alignment:
Q  174 ctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggag 273  Q
    |||||||| |||||||||| ||  |||| |||| ||||||||| ||||||||||||||||||||||||| | |||||||| ||||||||| |||||| ||    
T  47519238 ctaaaatggaatttattaagataacaataaatcttaaccagcacaaggagtgttaggttaagagtcttacactagcaacaaacaaaggat-gatgggaag 47519140  T
Q  274 ctcccaatggaaaactcatacaccc 298  Q
    | ||||||||||||| |||||||||    
T  47519139 cccccaatggaaaacccatacaccc 47519115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 31360857 - 31360724
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    |||||||||||||||||||||||| ||  || |||||| || |||||| |||||||||||||  |  ||||||| |||||||||| ||||| ||| ||||    
T  31360857 aaaagctaaaatgaaatttattaagataacactgaatcttagccagcacaaggagtgttaggccagaagtcttatagtagcaacacacaaatgat-gatg 31360759  T
Q  269 gggagctcccaatggaaaactcatacacccgtgaa 303  Q
    || ||| ||||||| ||||| ||||||||||||||    
T  31360758 ggaagcccccaatgaaaaacccatacacccgtgaa 31360724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 302
Target Start/End: Complemental strand, 23055046 - 23054947
Alignment:
Q  203 aatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagctcccaatggaaaactcatacacccgtga 302  Q
    |||| ||||||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||||| | |||  | |||| ||||  |||||||||||||    
T  23055046 aatcttaaccagcacaaggagtgttaggctaagagtcttaaaatagtaacatacaaaggatagatgagaagccgctaatgaaaaatccatacacccgtga 23054947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 3914916 - 3915002
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    ||||||||||||||||||||  || ||||||||||| |||| ||||||||  || ||| |||||  |||||||||||||||||||||    
T  3914916 aaaatgaaatttattaaaatcacactgaatcctaacaagcacaaggagtgccagattaggagtcgaaaagtagcaacatacaaagga 3915002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 34227771 - 34227681
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaa 259  Q
    |||| |||||||| || |||||||  | |||||||||| ||||||||| || | |||||||| |||||||||||||||||||||| |||||    
T  34227771 aaaaactaaaatggaacttattaatctcgcaatgaatcttaaccagcacaaagcgtgttaggctaagagtcttaaagtagcaacaaacaaa 34227681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 6409314 - 6409447
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggt----taagagtcttaaagtagcaacatacaaaggataga 266  Q
    |||||||| |||||||  |||||||| ||||||||  ||||  | |||||||||||||||     || |||| |||||||||||||||| |||||||||     
T  6409314 aagctaaattgaaattagttaaaattacaatgaatgttaacatgtataaggagtgttaggcgcgctaggagtattaaagtagcaacatataaaggatag- 6409412  T
Q  267 tggggagctcccaatggaaaactcatacacccgtg 301  Q
    ||| ||||  |||||||||||| ||||||||||||    
T  6409413 tggagagcctccaatggaaaacccatacacccgtg 6409447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 51407871 - 51407782
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||| ||||||||||||||||||||  |||| | |||||||||||||||||| || |||  || ||||| |||| |||||||||||||||    
T  51407871 aagcaaaaatgaaatttattaaaatcacaataactcctaaccagcataaggaatgctagactaggagtcgtaaaatagcaacatacaaag 51407782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 52721914 - 52721863
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  52721914 aagctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagga 52721863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 8817138 - 8817231
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||||| |||||| |||||||||||||  |||| | ||||||| || ||||||| ||||||  || ||||| |||| |||||||||||||||||    
T  8817138 aaaagcaaaaatggaatttattaaaatcacaataactcctaactagtataaggaatgttagactaggagtcgtaaaatagcaacatacaaagga 8817231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 303
Target Start/End: Original strand, 53201582 - 53201712
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggg 270  Q
    ||||||||||| ||||| |||| || ||||| |||| ||||| ||| ||||| ||||||| || |||||||| |||| ||| | ||||||||| ||| ||    
T  53201582 aagctaaaatggaatttgttaatatagcaattaatcttaaccggcacaaggaatgttaggctaggagtcttacagtaacaataaacaaaggat-gat-gg 53201679  T
Q  271 gagctcccaatggaaaactcatacacccgtgaa 303  Q
     | | ||||||||||||  ||||||||||||||    
T  53201680 aaacccccaatggaaaatccatacacccgtgaa 53201712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 24784933 - 24784890
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccag 214  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  24784933 aagctaaaatgaaatttattaaaatcacaatgaatcctaaccag 24784890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 24823333 - 24823376
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccag 214  Q
    |||||||||||||||||||||||||  |||||||||||||||||    
T  24823333 aagctaaaatgaaatttattaaaatcacaatgaatcctaaccag 24823376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 367
Target Start/End: Complemental strand, 14566632 - 14566590
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatca 367  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  14566632 cctataggaaacgcctcctaacaaagggctatctccgaaatca 14566590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 262
Target Start/End: Original strand, 23532904 - 23532990
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    ||||| ||||||||||||||  |||||| |||||||||||||||||| || ||| ||| || || | |||||| | |||||||||||    
T  23532904 aaaataaaatttattaaaatcacaatgagtcctaaccagcataaggaatgctagattatgattcgttaagtagtatcatacaaagga 23532990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 12887838 - 12887923
Alignment:
Q  177 aaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    |||| ||||||||||||||  |||||||||||||| |||| ||||| || |||  || | ||| ||||||||||||||| ||||||    
T  12887838 aaataaaatttattaaaatcacaatgaatcctaacaagcacaaggaatggtagactaggggtcgtaaagtagcaacatataaagga 12887923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 2181216 - 2181144
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagta 247  Q
    |||||||||||||||||||||| || ||||||||||| |||| ||||| || |||  || ||||| |||||||    
T  2181216 taaaatgaaatttattaaaattacagtgaatcctaactagcacaaggaatgctagactaggagtcgtaaagta 2181144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 3925946 - 3926030
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||||| |||||||||||||  |||||||| ||||| |||| ||||||||  || ||| |||||  |||||||| ||||||||||    
T  3925946 aaaatggaatttattaaaatcacaatgaatactaacaagcacaaggagtgccagattaggagtcgaaaagtagctacatacaaag 3926030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 39051741 - 39051824
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    |||||| |||||||||||||  |||||||| |||||||||| ||||| |||||| ||| |||||  ||| ||| |||||||||||    
T  39051741 aaaatggaatttattaaaatcacaatgaattctaaccagcacaaggaatgttagattatgagtcacaaaatag-aacatacaaag 39051824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 50589126 - 50589170
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataag 220  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||    
T  50589126 aaaatgaaatttattaaaatcacaatgagtcctaaccagcataag 50589170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 325 - 368
Target Start/End: Original strand, 53201733 - 53201776
Alignment:
Q  325 cctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||    
T  53201733 cctataggaaacacctcctaacaaagggctatctccgaaatcaa 53201776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 19657758 - 19657812
Alignment:
Q  247 agcaacatacaaaggatagatggggagctcccaatggaaaactcatacacccgtg 301  Q
    ||||||||||||| |||||||| ||||| ||||||   |||||||||||||||||    
T  19657758 agcaacatacaaaagatagatgaggagcacccaattataaactcatacacccgtg 19657812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 39958244 - 39958196
Alignment:
Q  174 ctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataagga 222  Q
    ||||||||||||||||||||||  || |||||||||| ||||| |||||    
T  39958244 ctaaaatgaaatttattaaaatcacagtgaatcctaatcagcacaagga 39958196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 260
Target Start/End: Original strand, 50626521 - 50626604
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaag 260  Q
    ||||||||||||||||||||  |||||| || | |||| || ||  ||| ||||| || ||||| ||||||||||||||||||||    
T  50626521 aaaatgaaatttattaaaatcacaatgagtcatgaccaacacaaaaagt-ttaggctaggagtcgtaaagtagcaacatacaaag 50626604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 55728145 - 55728233
Alignment:
Q  174 ctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaagga 262  Q
    ||||||||||||||||| |||  |||| |||||||| | || |  |||| || ||| ||| || | |||||||||||||||||||||||    
T  55728145 ctaaaatgaaatttattcaaaacgcaaagaatcctagcgaggacgaggaatgctagattaggaatattaaagtagcaacatacaaagga 55728233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 183 - 301
Target Start/End: Complemental strand, 6223 - 6105
Alignment:
Q  183 aatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagctcccaatg 282  Q
    |||||||||||||  |||||||| ||||| |||| ||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||| |||||||    
T  6223 aatttattaaaatcacaatgaattctaactagcacaaggagtgttaggctatgagtcttaatgtagcaacatataaaggatagatggggagcccccaatg 6124  T
Q  283 gaaaactcatacacccgtg 301  Q
    |||||| |||||| |||||    
T  6123 gaaaacccatacatccgtg 6105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 183 - 301
Target Start/End: Original strand, 53790 - 53908
Alignment:
Q  183 aatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatggggagctcccaatg 282  Q
    |||| ||||||||| ||||||||| ||||||||| || | |||||||| || ||||| |||||||||||||||||| ||||||||||||||| ||||||     
T  53790 aattgattaaaattacaatgaatcataaccagcacaatgcgtgttaggctaggagtcgtaaagtagcaacatacaatggatagatggggagcacccaatt 53889  T
Q  283 gaaaactcatacacccgtg 301  Q
    | |||||||||||||||||    
T  53890 gtaaactcatacacccgtg 53908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 21880758 - 21880853
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatgggg 271  Q
    ||||||||||||||||||||| |||||||||| ||||||||| |||||||| |||| || || |||||||| | ||||||||||||||| |||||||    
T  21880758 taaaatgaaatttattaaaatcgcaatgaatcttaaccagcacaaggagtgctaggctaggaatcttaaag-aacaacatacaaaggatggatgggg 21880853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 1869250 - 1869374
Alignment:
Q  169 aaaagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggatagatg 268  Q
    ||||||||||||| |||||||||| ||  ||||||||| ||||||||| ||||| |  |||| |  |||||||| | |||||||| ||||||||| ||||    
T  1869250 aaaagctaaaatggaatttattaagataacaatgaatcttaaccagcacaaggaatactaggctcggagtcttacattagcaacaaacaaaggat-gatg 1869348  T
Q  269 gggagctcccaatggaaaactcataca 295  Q
    || ||| ||||||| ||||||||||||    
T  1869349 ggaagc-cccaatgtaaaactcataca 1869374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 34503486 - 34503405
Alignment:
Q  176 aaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaa 258  Q
    |||||||||||||| |||||  ||||||||||||||||||| ||||| || |||| || ||||| ||||||||||||||||||    
T  34503486 aaaatgaaatttat-aaaatcacaatgaatcctaaccagcagaaggaatgctaggctaggagtcgtaaagtagcaacatacaa 34503405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 305
Target Start/End: Complemental strand, 34214174 - 34214057
Alignment:
Q  189 ttaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtag-caacatacaaaggatagatggggagctcccaatggaaaa 287  Q
    ||||||| |||||||||| || |||||| || ||||| |||   | |||||||||||||  ||||||||||||||||  || |||||  |||||||||||    
T  34214174 ttaaaatcgcaatgaatcttagccagcacaaagagtgctagaccatgagtcttaaagtaaacaacatacaaaggatatgtgaggagcctccaatggaaaa 34214075  T
Q  288 ctcatacacccgtgaatc 305  Q
    |||||||||| |||||||    
T  34214074 ctcatacacctgtgaatc 34214057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 20739951 - 20740017
Alignment:
Q  197 gcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaaggat 263  Q
    |||||||||| ||||||||| ||||||||||| | || |||||||| |||||||||| |||||||||    
T  20739951 gcaatgaatcttaaccagcacaaggagtgttaagctaggagtcttacagtagcaacaaacaaaggat 20740017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 24046085 - 24046002
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacata 255  Q
    |||| |||||||||||||||||| |  ||||||||||| ||||||| ||||| ||||||  || ||||| |||||||||||||||    
T  24046085 aagccaaaatgaaatttattaaa-tcacaatgaatcctgaccagcacaaggaatgttagaatatgagtcgtaaagtagcaacata 24046002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 13032350 - 13032404
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttag 229  Q
    |||||||||||||||||||||  ||||||||||||||||||| ||| | ||||||    
T  13032350 taaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagaaatgttag 13032404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 32018652 - 32018611
Alignment:
Q  175 taaaatgaaatttattaaaattgcaatgaatcctaaccagca 216  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  32018652 taaaatgaaatttattaaaatcacaatgaatcctaaccagca 32018611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 368
Target Start/End: Original strand, 20740077 - 20740119
Alignment:
Q  326 ctataggaaacgcctcctaacaaagggctaactctgaaatcaa 368  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||    
T  20740077 ctataagaaacgcctcctaacaaagggctatctccgaaatcaa 20740119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 22577308 - 22577364
Alignment:
Q  174 ctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttagg 230  Q
    |||||||| |||||||||||||   ||||| |||||||||||| |||||||| ||||    
T  22577308 ctaaaatggaatttattaaaatcaaaatgagtcctaaccagcacaaggagtgctagg 22577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 259
Target Start/End: Original strand, 22696096 - 22696183
Alignment:
Q  171 aagctaaaatgaaatttattaaaattgcaatgaatcctaaccagcataaggagtgttaggttaagagtcttaaagtagcaacatacaaa 259  Q
    |||| ||||||||||| ||||||||  ||||||||| || |||| | ||||| || |||  |||||||  |||||||||||||||||||    
T  22696096 aagccaaaatgaaatt-attaaaatcacaatgaatcatatccagtacaaggaatgctagactaagagttgtaaagtagcaacatacaaa 22696183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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