View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8750_low_7 (Length: 301)
Name: NF8750_low_7
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8750_low_7 |
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| [»] scaffold0339 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 47267933 - 47268196
Alignment:
| Q |
20 |
tacaagattcttactgtgtccctatttttgtatttctaannnnnnnngtgaggtttatgattgcaattctagcactgtgtagaagatttgcataattcaa |
119 |
Q |
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| T |
47267933 |
tacaagattcttactgtgtccctatttttgtatttctaattttttttgtgaggtttatgattgcaattctagcactgtgtagaggatttgcataattcaa |
47268032 |
T |
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| Q |
120 |
attgttgtataaattgtgtatggaaattttgcttaaagtgtacattgtggcttactctttgggaatttcttactttggttttgtaattttaaaaatttag |
219 |
Q |
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| T |
47268033 |
attgttgtataaattgtgtatggaaattttgcttaaagtgtacattgtggcttactctttgggaatttcttactttggttttgtaattttaaaaatttag |
47268132 |
T |
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| Q |
220 |
cgaattgggtacattgcaattgagattgattgatcctgagctagttttttgtatcattgatctt |
283 |
Q |
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| T |
47268133 |
caaattgggtacattgcaattgagattgattgttcctgagctagttgtttgtatcattgatctt |
47268196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 47279641 - 47279760
Alignment:
| Q |
20 |
tacaagattcttactgtgtccctatttttgtatttctaannnnnnnngtgaggtttatgattgcaattctagcactgtgtagaagatttgcataattcaa |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47279641 |
tacaagattcttactgtgtccctatttttgtatttctaattttttttgtgaggtttatgattgcaattctagcactgtgtagaggatttgcataattcaa |
47279740 |
T |
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| Q |
120 |
attgttgtataaattgtgta |
139 |
Q |
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| T |
47279741 |
attgttgtataaattgtgta |
47279760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0339 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0339
Description:
Target: scaffold0339; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 283
Target Start/End: Complemental strand, 11449 - 11185
Alignment:
| Q |
20 |
tacaagattcttactgtgtccctatttttgtatttct-aannnnnnnngtgaggtttatgattgcaattctagcactgtgtagaagatttgcataattca |
118 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11449 |
tacaagattcttactgtgtccctatttttgtatttcttaattttttttgtgaggtttatgattgcaattctagcactgtgtagaggatttgcataattca |
11350 |
T |
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| Q |
119 |
aattgttgtataaattgtgtatggaaattttgcttaaagtgtacattgtggcttactctttgggaatttcttactttggttttgtaattttaaaaattta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11349 |
aattgttgtataaattgtgtatggaaattttgcttaaagtgtacattgtggcttactctttgggaatttcttactttggttttgtaattttaaaaattta |
11250 |
T |
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| Q |
219 |
gcgaattgggtacattgcaattgagattgattgatcctgagctagttttttgtatcattgatctt |
283 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
11249 |
gcaaattgggtacattgcaattgagattgattgttcctgagctagttgtttgtatcattgatctt |
11185 |
T |
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