View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8750_low_8 (Length: 286)
Name: NF8750_low_8
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8750_low_8 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 7971524 - 7971776
Alignment:
| Q |
18 |
aatccagaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaa |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7971524 |
aatccaaaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacatgacggctgccaccaaagatacaccggaa |
7971623 |
T |
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| Q |
118 |
atggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacacactg |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7971624 |
atggagttcaagtttggtagatgagacaatacaaaatgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacagactg |
7971723 |
T |
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| Q |
218 |
tattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtcc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7971724 |
tattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtcc |
7971776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 8042164 - 8041912
Alignment:
| Q |
18 |
aatccagaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaa |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8042164 |
aatccaaaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacatgacggctgccaccaaagatacaccggaa |
8042065 |
T |
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| Q |
118 |
atggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacacactg |
217 |
Q |
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| T |
8042064 |
atggagttcaagtttggtagatgagacaatacaaaatgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacagactg |
8041965 |
T |
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| Q |
218 |
tattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtcc |
270 |
Q |
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| T |
8041964 |
tattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtcc |
8041912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 8032284 - 8032034
Alignment:
| Q |
18 |
aatccagaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaa |
117 |
Q |
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|||||| |||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| |||||||||||| |
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| T |
8032284 |
aatccaaaatacatatttgagcctaaaa-gtaatatagagaatagaaagatgtcgatataccaaatggacatgactgctgcaaccaaggatacaccggaa |
8032186 |
T |
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| Q |
118 |
atggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacacactg |
217 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||||||||| |||||||| |
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| T |
8032185 |
atggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaataggtcaatttgatatttttgcaacttgaacacactg |
8032086 |
T |
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| Q |
218 |
tattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtc |
269 |
Q |
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||||||| || || ||||||||||||||||||||||||||||||||||||| |
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| T |
8032085 |
tattgtggaacttccgcaatgatgcacctccggtgaccatgtagacaatgtc |
8032034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 3047 - 3297
Alignment:
| Q |
18 |
aatccagaatacaaatttgagcctaaaaagtaatatagagaataaaaagatgtcgatatacctcatggacataacggctgccaccaaagatacaccggaa |
117 |
Q |
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|||||| |||||| ||||||| |||||||||| ||||||||| | | ||| || |||||||| |||||||| || |||||||||||||||||||| ||| |
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| T |
3047 |
aatccaaaatacatatttgagtctaaaaagtactatagagaacagatagaagtagatataccaaatggacatgactgctgccaccaaagatacaccagaa |
3146 |
T |
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| Q |
118 |
atggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacacactg |
217 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
3147 |
atggagttcaagtttggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaatatgtcaatttgatatttttgcaacttggacacactg |
3246 |
T |
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| Q |
218 |
tattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgt |
268 |
Q |
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||||||| || ||| ||| |||||||||||||||||||||||| ||||||| |
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| T |
3247 |
tattgtggaactttcgcagtgatgcacctccggtgaccatgtaaacaatgt |
3297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 84 - 271
Target Start/End: Original strand, 41381989 - 41382176
Alignment:
| Q |
84 |
ggacataacggctgccaccaaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaag |
183 |
Q |
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||||||||| ||||| || |||||||||| |||| |||||| | ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
41381989 |
ggacataactgctgcaacaaaagatacactagaaagggagttgaggttgggtagatgacacaatacaaattgagcagaggcaaagatcataatgaaaaag |
41382088 |
T |
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| Q |
184 |
ctcaatttgattggtttgcaacttggacacactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtcca |
271 |
Q |
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| T |
41382089 |
ctcaatttgattggtttgcaacttggacaaactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgtcca |
41382176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 103 - 268
Target Start/End: Original strand, 14198574 - 14198739
Alignment:
| Q |
103 |
aaagatacaccggaaatggagttcaagtttggtagatgagacaatacaaagtgagcagaggcaaagatcataatgaaaaagctcaatttgattggtttgc |
202 |
Q |
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||||| ||||| ||||| ||||||||||| || || |||||||| ||||||||| |||||||||| ||||| || ||| | ||||||||||| ||||| |
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| T |
14198574 |
aaagagacaccagaaatagagttcaagttagggaggtgagacaagacaaagtgaacagaggcaaaaatcattataaaataagtcaatttgatttttttgc |
14198673 |
T |
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| Q |
203 |
aacttggacacactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgtagacaatgt |
268 |
Q |
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|| | |||||| |||| ||||| || ||||| ||| |||||||| |||||||||||||||| |
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| T |
14198674 |
aatcggaacacacggtatcatgaaacttctgcaaagattttcctccggttaccatgtagacaatgt |
14198739 |
T |
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