View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8750_low_9 (Length: 254)

Name: NF8750_low_9
Description: NF8750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8750_low_9
NF8750_low_9
[»] chr1 (38 HSPs)
chr1 (1-236)||(17674166-17674401)
chr1 (1-204)||(13120710-13120913)
chr1 (1-236)||(42740127-42740357)
chr1 (1-236)||(24556823-24557054)
chr1 (1-236)||(22386648-22386884)
chr1 (1-236)||(44836538-44836768)
chr1 (17-220)||(26486203-26486404)
chr1 (1-222)||(50371151-50371372)
chr1 (1-229)||(37873575-37873809)
chr1 (1-236)||(12971423-12971657)
chr1 (1-220)||(27703362-27703576)
chr1 (1-224)||(18127760-18127984)
chr1 (24-224)||(47-251)
chr1 (7-224)||(9777436-9777655)
chr1 (1-201)||(30899673-30899876)
chr1 (3-224)||(1269570-1269793)
chr1 (1-90)||(12884095-12884184)
chr1 (1-224)||(25930621-25930844)
chr1 (1-201)||(48722214-48722417)
chr1 (1-236)||(5560500-5560735)
chr1 (11-224)||(30004730-30004944)
chr1 (1-201)||(14084547-14084748)
chr1 (1-236)||(51109910-51110148)
chr1 (1-201)||(10109737-10109940)
chr1 (9-236)||(15441315-15441542)
chr1 (1-189)||(6150738-6150926)
chr1 (9-224)||(52055577-52055793)
chr1 (8-201)||(50552519-50552711)
chr1 (9-201)||(28885519-28885710)
chr1 (23-224)||(17487101-17487308)
chr1 (22-224)||(20905108-20905313)
chr1 (22-85)||(29208060-29208124)
chr1 (1-72)||(33124605-33124677)
chr1 (1-44)||(38263881-38263924)
chr1 (23-154)||(6333413-6333541)
chr1 (24-72)||(31369380-31369428)
chr1 (139-201)||(33124489-33124550)
chr1 (9-58)||(3907496-3907545)
[»] chr5 (33 HSPs)
chr5 (1-236)||(17325861-17326097)
chr5 (1-236)||(18873474-18873712)
chr5 (1-236)||(7390213-7390447)
chr5 (7-224)||(10033570-10033791)
chr5 (1-224)||(138161-138384)
chr5 (1-236)||(42291692-42291928)
chr5 (1-236)||(33281691-33281925)
chr5 (1-224)||(29156207-29156430)
chr5 (1-224)||(43511635-43511858)
chr5 (1-236)||(3349542-3349776)
chr5 (1-236)||(20976002-20976236)
chr5 (75-236)||(16515596-16515757)
chr5 (1-223)||(17513761-17513983)
chr5 (1-236)||(5829402-5829633)
chr5 (1-236)||(10591086-10591320)
chr5 (9-236)||(4734393-4734621)
chr5 (9-224)||(13423889-13424106)
chr5 (7-224)||(12661332-12661549)
chr5 (1-224)||(27351366-27351589)
chr5 (1-229)||(19099132-19099361)
chr5 (1-187)||(40779209-40779393)
chr5 (1-154)||(13474647-13474800)
chr5 (11-145)||(40956340-40956475)
chr5 (37-224)||(8379267-8379453)
chr5 (1-154)||(13656227-13656380)
chr5 (27-224)||(26312027-26312228)
chr5 (29-87)||(931420-931478)
chr5 (22-224)||(26377598-26377800)
chr5 (9-59)||(16515549-16515599)
chr5 (109-224)||(23069350-23069464)
chr5 (134-219)||(4177351-4177435)
chr5 (107-224)||(37046906-37047024)
chr5 (1-78)||(36718535-36718614)
[»] chr3 (35 HSPs)
chr3 (1-230)||(46904759-46904988)
chr3 (9-224)||(27303212-27303425)
chr3 (1-241)||(7767080-7767323)
chr3 (1-224)||(51146954-51147177)
chr3 (1-154)||(42009156-42009309)
chr3 (1-175)||(50677187-50677361)
chr3 (1-115)||(36538119-36538233)
chr3 (1-224)||(25598905-25599133)
chr3 (8-223)||(40151955-40152170)
chr3 (7-236)||(48626842-48627070)
chr3 (9-201)||(29387601-29387793)
chr3 (1-224)||(28132559-28132782)
chr3 (1-224)||(51939377-51939603)
chr3 (1-224)||(52654945-52655170)
chr3 (1-224)||(13401476-13401699)
chr3 (1-154)||(21784677-21784831)
chr3 (22-224)||(23164394-23164598)
chr3 (1-224)||(24252637-24252862)
chr3 (1-154)||(46791591-46791744)
chr3 (1-151)||(8364189-8364340)
chr3 (1-189)||(18408208-18408395)
chr3 (40-236)||(43905666-43905861)
chr3 (8-87)||(1255013-1255090)
chr3 (2-154)||(6715457-6715609)
chr3 (23-105)||(15987239-15987321)
chr3 (1-154)||(41706946-41707102)
chr3 (32-224)||(27729592-27729785)
chr3 (58-236)||(27110682-27110861)
chr3 (9-105)||(1649775-1649870)
chr3 (22-224)||(20762087-20762291)
chr3 (1-216)||(21596352-21596566)
chr3 (7-151)||(23067621-23067766)
chr3 (1-189)||(54430569-54430758)
chr3 (1-87)||(19965841-19965927)
chr3 (121-189)||(19965737-19965804)
[»] chr2 (35 HSPs)
chr2 (7-236)||(29480448-29480678)
chr2 (1-236)||(13997331-13997565)
chr2 (1-236)||(36059717-36059952)
chr2 (1-220)||(1418926-1419145)
chr2 (1-224)||(39081415-39081636)
chr2 (2-224)||(17117469-17117691)
chr2 (9-175)||(38599427-38599592)
chr2 (9-236)||(18172755-18172979)
chr2 (33-229)||(1226085-1226281)
chr2 (1-236)||(15457517-15457753)
chr2 (1-224)||(26151570-26151794)
chr2 (9-236)||(38985521-38985748)
chr2 (1-224)||(21747055-21747277)
chr2 (9-224)||(18915877-18916093)
chr2 (22-201)||(45619014-45619192)
chr2 (1-224)||(4856010-4856234)
chr2 (1-187)||(41096398-41096585)
chr2 (1-201)||(42411406-42411605)
chr2 (22-201)||(36481432-36481611)
chr2 (1-224)||(31272990-31273213)
chr2 (1-222)||(2063822-2064044)
chr2 (1-224)||(18676132-18676358)
chr2 (1-85)||(25222340-25222425)
chr2 (1-224)||(7993649-7993873)
chr2 (1-150)||(19367317-19367466)
chr2 (2-207)||(13001655-13001861)
chr2 (62-132)||(38599593-38599663)
chr2 (2-236)||(42759567-42759802)
chr2 (22-224)||(45042430-45042632)
chr2 (8-154)||(27302429-27302568)
chr2 (1-85)||(34061818-34061903)
chr2 (1-78)||(6530676-6530754)
chr2 (1-78)||(13020440-13020518)
chr2 (109-224)||(12269551-12269667)
chr2 (107-184)||(9029718-9029795)
[»] chr7 (36 HSPs)
chr7 (1-220)||(36438179-36438398)
chr7 (1-224)||(26633380-26633603)
chr7 (1-164)||(7366704-7366867)
chr7 (1-220)||(40737829-40738038)
chr7 (20-224)||(28589969-28590171)
chr7 (1-224)||(1366026-1366249)
chr7 (1-148)||(32956792-32956940)
chr7 (1-111)||(18895334-18895444)
chr7 (1-224)||(30739140-30739365)
chr7 (33-224)||(40841066-40841260)
chr7 (4-236)||(42312029-42312262)
chr7 (24-224)||(25610106-25610306)
chr7 (1-222)||(41908195-41908416)
chr7 (7-224)||(773707-773925)
chr7 (22-218)||(3799593-3799786)
chr7 (1-201)||(12251135-12251335)
chr7 (7-222)||(41852127-41852341)
chr7 (1-224)||(33910081-33910306)
chr7 (7-236)||(33418926-33419158)
chr7 (1-201)||(46221550-46221750)
chr7 (1-201)||(36796219-36796419)
chr7 (1-65)||(9479144-9479208)
chr7 (1-159)||(44876047-44876202)
chr7 (22-224)||(6379907-6380110)
chr7 (22-201)||(42160970-42161146)
chr7 (1-224)||(7636146-7636373)
chr7 (9-224)||(18015403-18015621)
chr7 (1-154)||(11672603-11672756)
chr7 (160-236)||(7369967-7370044)
chr7 (1-58)||(26282532-26282589)
chr7 (1-48)||(40001696-40001743)
chr7 (9-78)||(4099993-4100063)
chr7 (9-85)||(44893991-44894068)
chr7 (1-48)||(8358294-8358341)
chr7 (109-187)||(21145482-21145557)
chr7 (65-224)||(40001535-40001694)
[»] chr8 (27 HSPs)
chr8 (2-236)||(36514966-36515202)
chr8 (2-195)||(3628600-3628793)
chr8 (9-236)||(42076133-42076361)
chr8 (1-236)||(12531576-12531812)
chr8 (1-189)||(32098036-32098225)
chr8 (1-236)||(34523767-34523998)
chr8 (83-224)||(35874998-35875139)
chr8 (1-236)||(39697755-39697985)
chr8 (29-181)||(29372402-29372554)
chr8 (1-224)||(43926148-43926370)
chr8 (1-201)||(1004075-1004272)
chr8 (1-201)||(13585316-13585515)
chr8 (1-224)||(3471617-3471840)
chr8 (1-81)||(5869289-5869369)
chr8 (1-201)||(18420456-18420656)
chr8 (9-201)||(43967918-43968109)
chr8 (1-154)||(23567168-23567321)
chr8 (2-149)||(42777763-42777911)
chr8 (1-149)||(18112133-18112282)
chr8 (1-78)||(27074591-27074669)
chr8 (23-161)||(44664933-44665071)
chr8 (1-77)||(30915258-30915335)
chr8 (141-224)||(33452916-33452999)
chr8 (33-87)||(33452841-33452894)
chr8 (1-137)||(7858102-7858240)
chr8 (8-58)||(35874950-35875000)
chr8 (1-85)||(42951727-42951816)
[»] chr4 (28 HSPs)
chr4 (9-220)||(35653808-35654019)
chr4 (1-220)||(21791377-21791594)
chr4 (9-184)||(22423709-22423886)
chr4 (1-189)||(10575382-10575570)
chr4 (83-224)||(24449198-24449339)
chr4 (1-236)||(34982241-34982476)
chr4 (1-236)||(23425977-23426213)
chr4 (8-189)||(5545353-5545534)
chr4 (1-224)||(32130612-32130837)
chr4 (1-189)||(41038267-41038453)
chr4 (1-224)||(53011729-53011956)
chr4 (1-154)||(45172539-45172692)
chr4 (1-224)||(55134225-55134449)
chr4 (1-224)||(27632415-27632640)
chr4 (1-82)||(43154754-43154835)
chr4 (1-194)||(19661396-19661588)
chr4 (1-224)||(11681564-11681789)
chr4 (1-224)||(11689843-11690068)
chr4 (1-159)||(16072611-16072773)
chr4 (7-154)||(44478062-44478210)
chr4 (1-139)||(23256611-23256750)
chr4 (33-224)||(26328853-26329046)
chr4 (23-159)||(51066314-51066449)
chr4 (17-154)||(28463482-28463619)
chr4 (22-201)||(29221469-29221647)
chr4 (1-154)||(29579897-29580050)
chr4 (8-58)||(24449150-24449200)
chr4 (179-219)||(9925292-9925332)
[»] chr6 (25 HSPs)
chr6 (9-220)||(3748396-3748607)
chr6 (9-224)||(6294279-6294496)
chr6 (1-218)||(30915191-30915413)
chr6 (1-195)||(21946124-21946315)
chr6 (7-236)||(1092854-1093081)
chr6 (1-236)||(29308280-29308514)
chr6 (1-224)||(2618372-2618594)
chr6 (33-224)||(350464-350658)
chr6 (1-154)||(57705-57858)
chr6 (9-201)||(3514698-3514889)
chr6 (1-132)||(628010-628142)
chr6 (120-224)||(11088706-11088811)
chr6 (1-198)||(12614569-12614763)
chr6 (1-154)||(6754223-6754376)
chr6 (1-154)||(29401157-29401308)
chr6 (1-154)||(29149420-29149573)
chr6 (1-154)||(7525061-7525213)
chr6 (2-77)||(11088564-11088640)
chr6 (1-132)||(6360777-6360909)
chr6 (141-224)||(1690541-1690624)
chr6 (9-60)||(1690621-1690672)
chr6 (1-48)||(31861018-31861065)
chr6 (1-85)||(22503760-22503845)
chr6 (1-53)||(14893412-14893464)
chr6 (9-164)||(19231637-19231793)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-224)||(22628-22836)
[»] scaffold0564 (1 HSPs)
scaffold0564 (9-224)||(1086-1303)
[»] scaffold0126 (1 HSPs)
scaffold0126 (1-224)||(16727-16952)
[»] scaffold0606 (1 HSPs)
scaffold0606 (1-105)||(8336-8442)
[»] scaffold0181 (1 HSPs)
scaffold0181 (1-224)||(16956-17179)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-78)||(46143-46220)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 17674401 - 17674166
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17674401 ttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaagag 17674302  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    |||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17674301 tgacattccaaatgacaccgttaggtaaatttcacctatttttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatatgactttt 17674202  T
Q  201 taataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||| ||||||| ||||||||||||||||| |||||    
T  17674201 taatgaagtttaactacacaaaaagaattgtgtttt 17674166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13120913 - 13120710
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  13120913 ttaatcagtcaatttgaaaaactatttcattgaaagaatcaccacaattatttctttttcgcataaaccattcattttcccctttcctacgacgtaggag 13120814  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  13120813 tgacattccaaacgacaccgttaggtaaatttcacctctctatcacttaattttattttgttttgtttcgtgtttaaaagttcttctgattctgattttt 13120714  T
Q  201 taat 204  Q
    ||||    
T  13120713 taat 13120710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 42740127 - 42740357
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  42740127 ttaattagtcaatttgaaaaactatttcattgaaagaatcgcaacaattatttctttttcgcataaacaattcgttttcccctttcctacgacgtaggag 42740226  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    |||||||||||| || |  ||||||||||  | |||||||||||||||||||||||||||||||||||| |||||||||||||||||   ||||| ||||    
T  42740227 tgacattccaaatgaaactgttaggtaaa--tcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttct---tctgattttt 42740321  T
Q  201 taataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||| ||||||| | ||||||||| |||| ||||||    
T  42740322 taatgaagtttaaccacacaaaaaaaattacgtttt 42740357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 24556823 - 24557054
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |  |||||||  |||||||||    
T  24556823 ttaataagtcaatttgaaaaactatttcatttaaagaatcacaacaattatttctttttcgcataaaccattcgtttttctttttcctatcacgtaggag 24556922  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||||||||||||||| |||||||||||||| |||  |||||||||||||||||||||||||||||  |||||||||||||||||||| ||| | ||||    
T  24556923 tgacattccaaacgacaccgttaggtaaatttcacc--tctttcacttaattttattttgttttgtt--gtgtttaaaagttcttctgattctaattttt 24557018  T
Q  201 taataaagtttagctacacaaaaagaattgcgtttt 236  Q
     ||| ||| |||||||||||||||||||||||||||    
T  24557019 caatgaagcttagctacacaaaaagaattgcgtttt 24557054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 22386884 - 22386648
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatt-tctttttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||    
T  22386884 ttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattaatattttttttgcataaaccatttgttttcccctttcctacgacgtagga 22386785  T
Q  100 gtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    ||||||||||||||||||||||||  ||||||| || | ||||||||||||||||||||| |||||||||||||||||||  |||| ||| ||||| |||    
T  22386784 gtgacattccaaacgacatcgttaaataaatttcacatctctttcacttaattttattttattttgtttcgtgtttaaaaaatcttatgattctgatttt 22386685  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||| ||  ||| ||||| ||||| |||||| ||||    
T  22386684 ttaatgaaacttaactacaaaaaaaaaattgcatttt 22386648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 44836768 - 44836538
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||| ||    |||||||||||||||||||||| ||||| |||||||| ||||||||||||    
T  44836768 ttaatcagtcaatttgaaaaactatttcactgaaagaatcacatca----tttctttttcgcataaaccattcgtttttccctttcccacgacgtaggag 44836673  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    |||||||||||| |||| || ||||||||||| || | ||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||| | ||||    
T  44836672 tgacattccaaatgacaccgctaggtaaatttcacatctctttcacttaattttattttattttgtttcatgtttaaaagttcttatgattctaattttt 44836573  T
Q  201 taataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||||||  ||||||||||| ||| |||||||||||    
T  44836572 taataaa-cttagctacacagaaaaaattgcgtttt 44836538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 26486404 - 26486203
Alignment:
Q  17 aaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacattccaaacgac 116  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||| |||    
T  26486404 aaaagctatttcattgaaaaaatcataacaattatttctttttcgcataaactattcgttttcctctttcctacgacgtagaagtgacattccaaatgac 26486305  T
Q  117 atcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagcta 216  Q
    | |||| ||||||||| |||  ||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||| ||| ||| |||||||    
T  26486304 accgtttggtaaatttcacc--tctttcaattaattttattttattttgtttcatgtttaaaagttcttctgattctgatttttaaatgaagcttagcta 26486207  T
Q  217 caca 220  Q
    ||||    
T  26486206 caca 26486203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50371151 - 50371372
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| |||| ||||| ||||| || || ||| |||||    
T  50371151 ttaatcagtcaatttgaaaaactgtttcattgaaagaatcacaacaatcatttctttttcgcataaatcattagtttttcccttacccacaacggaggag 50371250  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | ||||||| |||||||||||||||||| |||| |||||||||||||||| |||| ||| ||||| |||||| |||||||| ||| ||||| |||    
T  50371251 tgacaaatccaaacaacatcgttaggtaaatttcacctctctttcacttaatttt-ttttatttcgtttcatgtttagaagttcttatgattctgatttt 50371349  T
Q  200 ttaataaagtttagctacacaaa 222  Q
    ||||| ||| |||||||||||||    
T  50371350 ttaatgaagcttagctacacaaa 50371372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 37873809 - 37873575
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcct-----acgacgt 95  Q
    ||||| ||| ||||| ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||     |||||||    
T  37873809 ttaatcagttaatttgaaaaactgtttcattgaaagaatcacaacaattatttcttttctgcataaaccattcgttttcccctttcctacgatacgacgt 37873710  T
Q  96 aggagtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaa-ttttattttgttttgtttcgtgtttaaaagttcttctgaatctg 194  Q
    ||||||||||| ||||||||||  |||| |||||||| |||| |||||||||||| |||||||||  |||||||| ||||||||||||||| ||| |||     
T  37873709 aggagtgacatgccaaacgacactgttacgtaaatttcacctctctttcacttaatttttattttagtttgtttcatgtttaaaagttcttatgattcta 37873610  T
Q  195 actttttaataaagtttagctacacaaaaagaatt 229  Q
    | |||||||| ||| ||| ||||||| ||| ||||    
T  37873609 attttttaatgaagcttaactacacacaaaaaatt 37873575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12971423 - 12971657
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || ||| |  ||    
T  12971423 ttaatcagtcaatttgaaaagctatttcatcgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcccacaacggataag 12971522  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | ||||||||||  ||||| ||||||| ||||||||||||||||| |||| || | ||| ||||| |||| | ||| |   |||| ||||| |||    
T  12971523 tgacaaatccaaacgactccgtta-gtaaattctacctatctttcacttattttttttgtatttcgtttcatgttaagaagctaaactgattctgatttt 12971621  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  12971622 ttaataaagtttagctatacaaaaa-aattgcgtttt 12971657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 27703576 - 27703362
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||  ||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||| | || ||| | |||    
T  27703576 ttaatcagtcaatttggaaagctatttcatcgaaagaatcacaacaatcatttcattttcgcataaaccattcgtttttcccttttccaccacggaagag 27703477  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||| |||||||||||  ||||||||||||| |||| || ||||||||||||||     ||| ||||| |||||| ||||| || ||| ||||| ||||    
T  27703476 tgacaatccaaacgacactgttaggtaaatttcacctctccttcacttaatttta-----tttcgtttcatgtttagaagttattatgattctgattttt 27703382  T
Q  201 taataaagtttagctacaca 220  Q
    ||| |||| ||| |||||||    
T  27703381 taacaaagcttaactacaca 27703362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 18127984 - 18127760
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||||||||||| |||||||||||||||||||| ||| ||||||||||| ||| ||||| |||||| | || ||  ||||    
T  18127984 ttaatcagtcaatttgaaaagctatttcattgcaagaatcacaacaattatttttttcttcgcataaactattcgttttacccttttccacaacaaagga 18127885  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctg--ac 196  Q
    ||||| | ||||||||||| ||||||||||||||||||  |||||||||||||||| ||||  ||| |||  |||||| |||||||| ||| ||||        
T  18127884 gtgacaaatccaaacgacaccgttaggtaaattttacc--tctttcacttaatttt-ttttaatttctttaatgtttagaagttcttatgattctgtttt 18127788  T
Q  197 tttttaataaagtttagctacacaaaaa 224  Q
    |||||||| || |||| |||||||||||    
T  18127787 tttttaatgaaatttaactacacaaaaa 18127760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 47 - 251
Alignment:
Q  24 atttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcgt 121  Q
    ||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| |||| ||  ||||||||| | ||||||||||| |||    
T  47 atttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttctacaacagaggagtgacaaatccaaacgacaccgt 146  T
Q  122 taggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga----ctttttaataaagtttagctac 217  Q
    ||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||  |||||||| ||| | |||     |||||||| ||||||||||||    
T  147 tagataaatttcacc--tctttcacttaatttttttttaattcctttcatgtttggaagttcttttgattttgattttttttttaatgaagtttagctac 244  T
Q  218 acaaaaa 224  Q
    |||||||    
T  245 acaaaaa 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 9777436 - 9777655
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaa-gaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgaca 105  Q
    ||||||||| || |||||||||| | ||| ||||||||||||| ||| | ||||| |||||||||||||||| ||||||||| |  | | | || ||| |    
T  9777436 agtcaatttgaataactatttcaataaaaagaatcacaacaatcattaccttttctcataaaccatttgttt-cccctttcccataatggatgaatgata 9777534  T
Q  106 t-tccaaacgacatcgttaggtaaattttacctatctttcacttaa-ttttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaa 203  Q
      ||||||||||| |||||||||||||| || | |||||||||||| |||| |||| ||| ||||| |||||| ||||| |||| | ||||| |||||||    
T  9777535 aatccaaacgacaccgttaggtaaatttcacttctctttcacttaattttttttttatttagtttcatgtttagaagttattctaattctgattttttaa 9777634  T
Q  204 taaagtttagctacacaaaaa 224  Q
    | ||||||||||||| |||||    
T  9777635 tgaagtttagctacaaaaaaa 9777655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 30899673 - 30899876
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttc---gcataaaccatttgttttcccctttcctacgacgtag 97  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||||| |||| ||||||   |||||||||||| ||||| |||||| | || ||  ||    
T  30899673 ttaattagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttttcttcgcataaaccattcgttttacccttttccacaacagag 30899772  T
Q  98 gagtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttg-tttcgtgtttaaaagttcttctgaatctga 195  Q
    || |||||  ||||||||||| |||||| ||||||| ||||  ||||||||||||||| ||||   ||  |||| |||||| |||||||||||| |||||    
T  30899773 gaatgacaaatccaaacgacaccgttagataaatttcacct--ctttcacttaattttttttttaattcctttcatgtttagaagttcttctgattctga 30899870  T
Q  196 cttttt 201  Q
     |||||    
T  30899871 tttttt 30899876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 1269570 - 1269793
Alignment:
Q  3 aattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacga-cgtaggagt 101  Q
    ||||||||||||| |||| |||||||||| |||||||||||||||| |||| |||| |||||| | |||| |||||| ||||||| || | || ||||||    
T  1269570 aattagtcaatttgaaaagctatttcattaaaagaatcacaacaatcattt-ttttccgcatata-cattcgttttctcctttcccacaagcggaggagt 1269667  T
Q  102 gac-attccaaacgacatcgttaggtaaattttacctatctttcacttaat-tttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    ||| | ||||||||||| ||||  |||||||| |||| ||||||||||| |  || |||| ||| ||||| |||||| |||||||  ||| ||||| |||    
T  1269668 gacaaatccaaacgacaccgttccgtaaatttcacctttctttcacttattaatttttttatttcgtttcatgtttagaagttctattgattctgatttt 1269767  T
Q  200 ttaat-aaagtttagctacacaaaaa 224  Q
    ||||| |||| ||| |||||||||||    
T  1269768 ttaataaaagcttaactacacaaaaa 1269793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 12884184 - 12884095
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctac 90  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||| ||||| |||||| ||||    
T  12884184 ttaatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatcattttttcttcgcataaaccattcgttttacccttttctac 12884095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 25930621 - 25930844
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||| || |||| ||||||||||||||| ||||||||||| |||| || || | |||||||||||||||| |||||| | || ||  | |||    
T  25930621 ttaatcagtcaacttgaaaagctatttcattgaaaggatcacaacaatcattttttctttggataaaccatttgttttacccttttccacaacagatgag 25930720  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ct 197  Q
    |||| | ||||||||||| |||||| |||||||  | | |||||||||||||||| ||||  ||  |||| | |||| ||| |||||||| |||||   |    
T  25930721 tgacaaatccaaacgacaccgttagataaattt--catctctttcacttaatttt-ttttaattcttttcatatttagaagctcttctgattctgatttt 25930817  T
Q  198 ttttaataaagtttagctacacaaaaa 224  Q
    ||||||| |||||||||||||||||||    
T  25930818 ttttaatgaagtttagctacacaaaaa 25930844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 48722417 - 48722214
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| |||||||||||||| |||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  48722417 ttaatcagtcaatttggaaagctatttcattgaaataatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 48722318  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaa---ttttattttgttttgtttcgtgtttaaaagttcttctgaatctga 195  Q
    ||||| | ||||||||||| |||||| ||||||| |||  ||||| ||||||   |||| ||||  ||| |||| |||||| |||||||||||| |||||    
T  48722317 gtgacaaatccaaacgacaccgttagataaatttcacc--tcttttacttaatattttttttttaatttctttcatgtttagaagttcttctgattctga 48722220  T
Q  196 cttttt 201  Q
     |||||    
T  48722219 tttttt 48722214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5560500 - 5560735
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattat-ttctttttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||| || || |||| ||||||||| |||  ||||| | ||||| || ||| ||||    
T  5560500 ttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaatcatatttttttccgcataaactattcattttctcttttcccacaacggagga 5560599  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttat-tttgttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    ||||| | ||||||  ||| || || ||||||||  | | ||||||||||| |||| | ||| ||||||||| |||||| |||||||| ||| || ||      
T  5560600 gtgacaaatccaaataacaccg-tacgtaaattt--catctctttcacttatttttttatttattttgtttcatgtttagaagttcttttgattcagatc 5560696  T
Q  198 ttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||| ||||||||| ||| ||||| |||||||||||    
T  5560697 ttttaatgaagtttagccacaaaaaaaaaattgcgtttt 5560735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 30004944 - 30004730
Alignment:
Q  11 aatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attcc 109  Q
    ||||| |||| ||||||||||||||||||| ||||||| |||| || ||| ||||||||||| ||||| || ||| | || ||  ||||||||| | | |    
T  30004944 aatttgaaaagctatttcattgaaagaatcgcaacaatcatttgttcttcccataaaccattcgttttacctttttccacaacagaggagtgacaaattc 30004845  T
Q  110 aaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt--tttaataaa 207  Q
    |||||| | |||||| ||||||| |||  | |||||||||||||| ||||  ||  |||| |||||| |||||||||||| ||||| ||  || ||| ||    
T  30004844 aaacgataccgttagataaatttcacc--tttttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttaattcaatgaa 30004747  T
Q  208 gtttagctacacaaaaa 224  Q
    |||||||||||||||||    
T  30004746 gtttagctacacaaaaa 30004730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 14084748 - 14084547
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaatta--tttctttttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||| ||| |  ||| || ||||||||||||||| ||||| |||||  | || ||  |||    
T  14084748 ttaatcagtcaatttagaaagctatttcattgaaagaatcacaataatcaatttttttcttcgcataaaccattcgttttacccttctccacaacagagg 14084649  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    |||||| | ||||||||||| | |||| ||||||| |||  ||||||| |||||||| ||||  ||  |||| |||||| |||||||||||| ||||| |    
T  14084648 agtgacaaatccaaacgacaccattagataaatttcacc--tctttcatttaatttttttttaattcctttcatgtttagaagttcttctgattctgatt 14084551  T
Q  198 tttt 201  Q
    ||||    
T  14084550 tttt 14084547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 51110148 - 51109910
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaatta-tttctttttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||| | ||| || |||||||||||||||||||||  ||||| | || ||  ||||    
T  51110148 ttaatcagtcaatttagaaagctatttcattgaaagaatcacaacaataagttttttcttcgcataaaccatttgttttatccttttccacaacaaagga 51110049  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--- 195  Q
    ||||| | | |||| |||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || ||||||| | |||||       
T  51110048 gtgacaaattcaaatgacaccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaaattcttctaattctgattt 51109952  T
Q  196 -ctttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
      |||||||| || |||||||||| ||||| |||| ||||||    
T  51109951 tttttttaatgaaatttagctacaaaaaaaaaattacgtttt 51109910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 10109737 - 10109940
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| | ||||||||||||||||||||||||| |||| ||| ||||||||||| ||| ||||| |||||| | || ||  ||||    
T  10109737 ttaatcagtcaatttggaaagcaatttcattgaaagaatcacaacaatcatttttttcttcgcataaactattcgttttacccttttccacaacagagga 10109836  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgt---tttgtttcgtgtttaaaagttcttctgaatctga 195  Q
    ||||| | ||||||||||  |||||| ||||||| |||  |||||||||||||||| |||| |   ||  |||| |||||| |||||||||||| |||||    
T  10109837 gtgacaaatccaaacgacgccgttagataaatttcacc--tctttcacttaattttttttttttaattcctttcatgtttagaagttcttctgattctga 10109934  T
Q  196 cttttt 201  Q
     |||||    
T  10109935 gttttt 10109940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 15441315 - 15441542
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaa-gaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacat- 106  Q
    |||||||| ||| |||||||||| ||| ||||||||||||| ||| |||||| ||||||| ||||  ||||||| ||||| || ||  | ||||||||      
T  15441315 tcaatttataaagctatttcattaaaaagaatcacaacaataatt-cttttttgcataaatcattcattttcccttttcc-acaacagaagagtgacaaa 15441412  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataa 206  Q
    ||||||||||  |||||||||||||| |||| |||||||||||  ||| |||| ||  ||||| |||||| |||||||||||| | ||| |||||||| |    
T  15441413 tccaaacgacgccgttaggtaaatttcacctctctttcactta--ttttttttattccgtttcatgtttagaagttcttctgattttgattttttaatga 15441510  T
Q  207 agttt--agctacacaaaaagaattgcgtttt 236  Q
    || ||  |  |||||||||| |||||||||||    
T  15441511 agcttaaatatacacaaaaaaaattgcgtttt 15441542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 6150738 - 6150926
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaat-tatttctttttcgcataaaccatttgtttt-cccctttcctacgacgtagg 98  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||  |||| || ||| ||||||||||| ||||| ||  ||| | || ||  |||    
T  6150738 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcaattttttcttcacataaaccattcgttttaccttttttccacaacagagg 6150837  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctga 189  Q
    |||||| | ||||||||||| |||||| ||||||| |||||  |||||||||||||| ||||  ||  |||| |||||| ||||||||||||    
T  6150838 agtgacaaatccaaacgacaccgttagataaatttcaccta--tttcacttaatttt-ttttaattcctttcatgtttagaagttcttctga 6150926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 52055577 - 52055793
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaatta-tttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-at 106  Q
    |||||||  ||| ||||||||||||||||||||||||||| | ||| |  ||||||||||||||| ||||| ||||||   || | | ||||||||| |     
T  52055577 tcaatttggaaagctatttcattgaaagaatcacaacaatcagtttttccttcgcataaaccattcgttttacccttttacacaaag-aggagtgacaaa 52055675  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaat 204  Q
    || |||||||| |||||| |||||||||||  ||||||||||| || | ||||  ||  |||| || ||| ||||| |||||| |||||   ||||||||    
T  52055676 tctaaacgacaccgttagataaattttacc--tctttcacttatttattttttaattcctttcatgcttagaagtttttctgattctgattttttttaat 52055773  T
Q  205 aaagtttagctacacaaaaa 224  Q
     |||||||||||||||||||    
T  52055774 gaagtttagctacacaaaaa 52055793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 50552519 - 50552711
Alignment:
Q  8 gtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-a 105  Q
    |||||||| ||||  |||||||||||||||||||||||||| |||| ||| |||| ||||||||||  |||| || ||| | || || |||||||||| |    
T  50552519 gtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgtataaaccattcattttacctttttccacaacataggagtgacaa 50552618  T
Q  106 ttccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
     ||||||||||| | |||| |||||||  | | |||||||||||||||| ||||  ||  |||| |||||| |||||||| ||| ||||| |||||    
T  50552619 atccaaacgacaccattagataaattt--catctctttcacttaatttt-ttttaattcctttcatgtttagaagttcttttgattctgatttttt 50552711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 28885710 - 28885519
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-at 106  Q
    |||||||  ||| ||||||||||| ||||||||||||||| |||| ||| ||||||||||||||| |||||  | ||| | || ||  | ||||||| |     
T  28885710 tcaattttgaaagctatttcattgtaagaatcacaacaatcatttttttcttcgcataaaccattcgttttatctttttccacaacagatgagtgacaaa 28885611  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    ||||||||||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||| | ||||| |||||    
T  28885610 tccaaacgacaccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctaattctgatttttt 28885519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 224
Target Start/End: Complemental strand, 17487308 - 17487101
Alignment:
Q  23 tatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcg 120  Q
    |||||||||||||||||||||||||| |||| ||| || |||||||||||| |||||  ||||| | || ||  ||||||||| | ||||||| ||  ||    
T  17487308 tatttcattgaaagaatcacaacaatcatttttttctttgcataaaccattcgttttatccttttccacaacagaggagtgacaaatccaaacaacgccg 17487209  T
Q  121 ttaggtaaattttacctatctttcacttaattttattttgt---tttgtttcgtgtttaaaagttcttctgaatctgacttttt---aataaagtttagc 214  Q
    |||| ||||||| |||  |||||||||||||||| |||| |   ||  |||| |||||| || ||||||||| ||||| |||||   ||| || ||||||    
T  17487208 ttagataaatttcacc--tctttcacttaattttttttttttaattcctttcatgtttagaacttcttctgattctgagtttttttcaatgaaatttagc 17487111  T
Q  215 tacacaaaaa 224  Q
    ||||||||||    
T  17487110 tacacaaaaa 17487101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 20905313 - 20905108
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgtttt-cccctttcctacgacgtaggagtgac-attccaaacgacat 118  Q
    ||||||||||||||||||||||||||| |||| ||| |||| |||||||||| ||||| ||| ||| | || ||  ||||||||| | |||||||||||     
T  20905313 ctatttcattgaaagaatcacaacaataatttttttcttcgtataaaccattcgttttaccctttttccacaacagaggagtgacaaatccaaacgacac 20905214  T
Q  119 cgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctg--actttttaataaagtttagcta 216  Q
    |||| | ||||||| |||   ||||||||||| ||| ||||  ||  |||| | |||| |||||||||| | ||||    |||||||| |||||||||||    
T  20905213 cgttggataaatttcacc--actttcacttaagttttttttaattcctttcatatttagaagttcttcttattctggttttttttaatgaagtttagcta 20905116  T
Q  217 cacaaaaa 224  Q
    ||||||||    
T  20905115 cacaaaaa 20905108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 29208124 - 29208060
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttccccttt 85  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| ||||||    
T  29208124 ctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttt 29208060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 33124677 - 33124605
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatt 72  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| ||| ||| |||||||||||    
T  33124677 ttaataagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcacataaaccatt 33124605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 38263881 - 38263924
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaa 44  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||    
T  38263881 ttaatcagtcaatttaaaaaactatttcattgatagaatcacaa 38263924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 6333541 - 6333413
Alignment:
Q  23 tatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtg-acattccaaacgacatcgt 121  Q
    ||||| ||| |||||||||||||||| |||| |||| ||||||||||||| | ||||||  |||| || ||| | ||||| | | |||||||||||  ||    
T  6333541 tattttattaaaagaatcacaacaatcattttttttccgcataaaccattcgctttccc--ttcccacaacgaatgagtgaagaatccaaacgacactgt 6333444  T
Q  122 taggtaaattttacctatctttcacttaatttt 154  Q
    |||||||||||  | | ||||||||||||||||    
T  6333443 taggtaaattt--catctctttcacttaatttt 6333413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 31369428 - 31369380
Alignment:
Q  24 atttcattgaaagaatcacaacaattatttctttttcgcataaaccatt 72  Q
    |||||||| |||||||||||| ||| |||||||||| ||||||||||||    
T  31369428 atttcattaaaagaatcacaaaaatcatttcttttttgcataaaccatt 31369380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 33124550 - 33124489
Alignment:
Q  139 tctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    |||||||||||||||| ||||  || ||||| ||||||||||||||||||| ||||| |||||    
T  33124550 tctttcacttaatttt-ttttaattcgtttcatgtttaaaagttcttctgattctgaattttt 33124489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 3907496 - 3907545
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttt 58  Q
    ||||||| ||||| ||||||||||||||||||| || ||| |||||||||    
T  3907496 tcaatttgaaaaattatttcattgaaagaatcataaaaataatttctttt 3907545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 17325861 - 17326097
Alignment:
Q  1 ttaattagtcaattt-aaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  17325861 ttaatcagtcaatttgaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgctttcccctttcctacgacgtagga 17325960  T
Q  100 gtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  17325961 gtgacattccaaacgacaccgttaggtaaatttcacctatctttcactttattttattttgttttgtttcgtgtttaaaagttcttctgattctgatttt 17326060  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||| || ||||||||||||||||||||||||||||    
T  17326061 ttaatgaattttagctacacaaaaagaattgcgtttt 17326097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 18873474 - 18873712
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattt---gttttcccctttcctacgacgtag 97  Q
    ||||| || |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||    
T  18873474 ttaatcagccaatttgaaaagctatttcattgaaagaatcacaacaattatttctttttcgcataaaccattattcgttttcccctttcctacgacgtag 18873573  T
Q  98 gagtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    |||||||||||||||||| | |||||||||||||| |||| |||||||||||| |||||||||||||||||| |||||||||||| |||||| ||| | |    
T  18873574 gagtgacattccaaacgaaaccgttaggtaaatttcacctttctttcacttaactttattttgttttgtttcatgtttaaaagtttttctgattctaatt 18873673  T
Q  198 ttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||| ||||||| |||||||| || |||| ||||||    
T  18873674 ttttaatgaagtttaactacacaataaaaattacgtttt 18873712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7390447 - 7390213
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||    
T  7390447 ttaatcagtcaatttaaaaagttatttcatcgaaagaatcacgacaattatttctttttcgcataaaccattcgttttcccctttcctgcgacatagaag 7390348  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    |||||||| |||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| || || ||||    
T  7390347 tgacattc-aaacgacaccgttagataaatttcacctctctttcacttaattttattttgttttgttttatgtttaaaagttcttctgattccgattttt 7390249  T
Q  201 taataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||| ||| ||||||||||| ||| |||| ||||||    
T  7390248 taatgaagcttagctacacacaaaaaattacgtttt 7390213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 10033570 - 10033791
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacat 106  Q
    ||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  10033570 agtcaatttgaaaagctattttattgaaagaatcacaataattatttctttttcgcataaaccattcgttttccc-tttcctacgacgtaggagtgacat 10033668  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcactta-----attttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    ||||||||| | |||||||||||||| |||| |||||||||||     |||||||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  10033669 tccaaacgaaaccgttaggtaaatttcacctctctttcacttaattttattttattttgttttgtttcatgtttaaaagttcttctgattctgatttttt 10033768  T
Q  202 aataaagtttagctacacaaaaa 224  Q
    ||  || |||| |||||||||||    
T  10033769 aacgaaatttaactacacaaaaa 10033791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 138161 - 138384
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||| |||| ||    
T  138161 ttaatcagtcaatttgaaaagctatttcattgaaataatcacaacaattattttttttccgcataaaccattcgttttccccttt-ctacgaagtagtag 138259  T
Q  101 tgacattccaaacg-acatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||||||||||  | | | ||||| |||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||| ||     
T  138260 tgacattccaagtgaaaaccgttaagtaaatttcacctctctttcacttaattttattttgttttgtttcctgtttaaaagttcttttgattttgatttc 138359  T
Q  200 ttaataaagtttagctacacaaaaa 224  Q
    ||||| ||  |||||||||||||||    
T  138360 ttaatgaaacttagctacacaaaaa 138384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42291928 - 42291692
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||  || |  ||    
T  42291928 ttaatcagtcaatttgaaaatctatttcattgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcccaccgcggataag 42291829  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttg--ttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    |||| | |||||| | ||||||| |||||||| ||||| |||||||||||||||| |||||  ||| ||||| |||||| ||| |||||||| ||||| |    
T  42291828 tgacaaatccaaatgtcatcgtt-ggtaaattctacctctctttcacttaatttttttttgtatttcgtttcatgtttagaagctcttctgattctgatt 42291730  T
Q  198 ttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||| |||||||||| ||||||||||| |||||||||||    
T  42291729 tttttataaagtttaactacacaaaaa-aattgcgtttt 42291692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 33281691 - 33281925
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||||||||||||||||||  |||||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||| || ||||| || ||| | |||    
T  33281691 ttaattagtcaatttaaaaagttatttcattgaaagaatcccaataatcatttctttttcgcataaaccatttgcttttccttttcccacaacggatgag 33281790  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | | ||||||||||||||| |||||||| |||| |||||||||| ||||| || | ||||||||| |||||| |||||||| ||| | |||  ||    
T  33281791 tgacaaattcaaacgacatcgttaagtaaatttcacctctctttcactt-atttttttatattttgtttcatgtttagaagttcttttgattatgatctt 33281889  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||| ||||||| |||||||||||| ||||||||||    
T  33281890 ttaatgaagtttaactacacaaaaag-attgcgtttt 33281925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29156207 - 29156430
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||| || ||| |  ||    
T  29156207 ttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaatcatttctttttcatataaaccattcgttttcccctttcccacaacggataag 29156306  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | | ||||||| | ||||| ||||||| ||||| ||||||| |||||||| || | ||||||||| |||||| ||| ||| |||| | ||| |||    
T  29156307 tgacaaattcaaacgataccgtta-gtaaattctacctctctttcaattaatttttttgtattttgtttcatgtttagaagctctactgattttgatttt 29156405  T
Q  200 ttaataaagtttagctacacaaaaa 224  Q
    |||||||||||||||||||||||||    
T  29156406 ttaataaagtttagctacacaaaaa 29156430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43511635 - 43511858
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||  |||||||||| ||||| |||||||| || ||| |  ||    
T  43511635 ttaatcagtcaatttgaaaagctatttcatggaaagaatcacaacaatcatttctttttcatataaaccattcgtttttccctttcccacaacggataag 43511734  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | ||||||||||| ||||| ||||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||| ||| |||| ||||| |||    
T  43511735 tgacaaatccaaacgacaccgtta-gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctctgctgattctgatttt 43511833  T
Q  200 ttaataaagtttagctacacaaaaa 224  Q
    ||||||||| |||||||||||||||    
T  43511834 ttaataaagcttagctacacaaaaa 43511858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 3349776 - 3349542
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||||||| || ||| |  ||    
T  3349776 ttaatcagtcaatttgaaaagctatttcatagaaagaatcacaacaatcatttctttttcacataaaccgttcgttttcccctttcccacaacggataag 3349677  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | ||||||  ||| ||||| ||||||| ||||| ||||||||| || ||| || | ||| ||||| |||||| ||  |||||||| ||||| |||    
T  3349676 tgacaaatccaaatcacaccgtta-gtaaattatacctctctttcactcaagttttttgtatttagtttcatgtttagaaactcttctgattctgatttt 3349578  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  3349577 ttaataaagcttagctacacaaaaa-aattgcgtttt 3349542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 20976002 - 20976236
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||| ||| ||||||  |||||| || ||| |  ||    
T  20976002 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttctttttcacataaactattcgttttcgtctttcccacaacggataag 20976101  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | |||||| |||| ||||| ||||||| ||||| |||||||||||||||| || | ||| |||   |||||||||| |||||||| | ||| |||    
T  20976102 tgacaaatccaaatgacaccgtta-gtaaattctacctctctttcacttaatttttttgtatttggttcaatgtttaaaagctcttctgattatgatttt 20976200  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||||||||  |||||||||||||| |||||||||||    
T  20976201 ttaataaagcatagctacacaaaaa-aattgcgtttt 20976236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 16515596 - 16515757
Alignment:
Q  75 ttttcccctttcctacgacgtaggagtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtt 174  Q
    |||| |||||| |||||| ||||||||||||||||||| |||| | |||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||    
T  16515596 tttttcccttttctacgatgtaggagtgacattccaaatgacaccattagctaaatttcacctctttttcacttaattttattttgttttgtttcatgtt 16515695  T
Q  175 taaaagttcttctgaatctgactttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    | ||||||||||| | ||||||||||| || ||| ||||||||||| ||| || ||||||||    
T  16515696 ttaaagttcttctcattctgactttttcatgaagcttagctacacacaaaaaaatgcgtttt 16515757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17513983 - 17513761
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||  ||||||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| || ||| |  ||    
T  17513983 ttaatcagtcaatttgaaaagttatttcactgaaagaatcacaacaatcatttctttttcacataaaccattcgtttttccctttcccacaacggataag 17513884  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | |||||||||  ||||| |||||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||| |||||||| |||   |||    
T  17513883 tgacaaatccaaacgaggtcgtt-ggtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctattttt 17513785  T
Q  200 ttaataaagtttagctacacaaaa 223  Q
    ||||||||| ||| ||||||||||    
T  17513784 ttaataaagcttaactacacaaaa 17513761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5829402 - 5829633
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||||||   |||||||||| |||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||||| ||| |   |    
T  5829402 ttaatcagtcaatttaaag--ctatttcattaaaagaatcacaacaatcatttctttttcacataaaccattcgtttttccctttcctacaacggatagg 5829499  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | |||||||||||  |||| ||||| | ||||| |||||||||||||||  |||||| ||   |  |||||| ||| |||||||| ||||| |||    
T  5829500 tgacaaatccaaacgacactgtta-gtaaactctacctctctttcacttaattt--ttttgtatttcattatgtttagaagctcttctgattctgatttt 5829596  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||||||||||||||| ||||| |||||| ||||    
T  5829597 ttaataaagtttagctacaaaaaaaaaattgcatttt 5829633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 10591320 - 10591086
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||| ||||| ||||  |||||||||||||||||||||||||| |||| |||||| || ||| |||| ||| |||||||||| || ||| |  ||    
T  10591320 ttaatcagttaatttgaaaagttatttcattgaaagaatcacaacaatcatttatttttcacaaaaatcattcgttatcccctttcccacaacggataag 10591221  T
Q  101 tga-cattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    | | || |||||||| || |||||| |||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||  | |||||| ||||| |||    
T  10591220 taatcaatccaaacggcaccgttag-taaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaaactattctgattctgatttt 10591122  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||||| ||| ||||||||||| |||||||||||    
T  10591121 ttaataaagcttaactacacaaaaa-aattgcgtttt 10591086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 4734621 - 4734393
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-att 107  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||  || |  |||||| | |    
T  4734621 tcaatttgaaaatctatttcattgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccatttcccacagcggataagtgacaaat 4734522  T
Q  108 ccaaacgacatcgttaggtaaattttacctatctttcacttaattttattt-tgttttgtttcgtgtttaaaagttcttctgaatctga-ctttttaata 205  Q
    ||||| |||| ||||| ||||||| ||| | |||||||||||||||| ||| | ||| ||||| |||||| ||| |||| ||| | | |  ||||| |||    
T  4734521 ccaaatgacaccgtta-gtaaattctacatctctttcacttaattttttttgtatttcgtttcatgtttagaagctcttttgattttaattttttttata 4734423  T
Q  206 aagtttagctacacaaaaagaattgcgtttt 236  Q
    || |||||||||||||||| |||||||||||    
T  4734422 aaatttagctacacaaaaa-aattgcgtttt 4734393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 13423889 - 13424106
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-at 106  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || |   ||||||||| |     
T  13423889 tcaatttagaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaatagaggagtgacaaa 13423988  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaat 204  Q
    || |||||||| |||| | ||||||| |||  |||||||||||||||| ||||  ||  |||| ||||||||||||||||||| |||||   ||||||||    
T  13423989 tctaaacgacaccgttcgataaatttcacc--tctttcacttaatttttttttaattcctttcatgtttaaaagttcttctgattctgattttttttaat 13424086  T
Q  205 aaagtttagctacacaaaaa 224  Q
     || |||| |||||||||||    
T  13424087 gaaatttaactacacaaaaa 13424106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 12661332 - 12661549
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgaca 105  Q
    |||||||||  ||| |||||||||||||||||||||||||||  ||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||||||||    
T  12661332 agtcaatttggaaagctatttcattgaaagaatcacaacaatattttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgaca 12661431  T
Q  106 t-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt--ta 202  Q
      |||||||||||  ||||| ||||||| ||  |||||||||||||||||  |||  ||  |||| |||||| |||||||||||| ||||| ||||  ||    
T  12661432 aatccaaacgacactgttagataaatttcac--atctttcacttaatttt--tttaattcctttcatgtttagaagttcttctgattctgatttttttta 12661527  T
Q  203 ataaagtttagctacacaaaaa 224  Q
    ||||| ||||||||||||||||    
T  12661528 ataaaatttagctacacaaaaa 12661549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27351366 - 27351589
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||  |||  ||||||||||||||||| ||   ||| |||||||||| |||||||||| |  |||||  |||||| || ||| |||||    
T  27351366 ttaatcagtcaatttggaaagttatttcattgaaagaataacctaaatcatttcttttttgcataaaccagtcattttcttctttcccacaacggaggag 27351465  T
Q  101 tgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||||  || ||||||||   |||||||||||| |||| |||||||||||||||| |||| |||  |||| |||||| |||||||||||| ||  | |||    
T  27351466 tgacaaatctaaacgacactattaggtaaatttcacctctctttcacttaatttt-ttttatttcctttcatgtttagaagttcttctgattcgaatttt 27351564  T
Q  200 ttaataaagtttagctacacaaaaa 224  Q
    ||||| |||||||||||||||||||    
T  27351565 ttaatgaagtttagctacacaaaaa 27351589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19099361 - 19099132
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgtttt-cccctttcctacgacgtagg 98  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||  | |||||| || ||  ||     
T  19099361 ttaatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttatcactttcc-acaaccgaga 19099263  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    |||||| | ||||||||||| |||||| ||||||| |||  |||||||||||||||| | ||  ||  |||| |||||| |||||||||||| ||||| |    
T  19099262 agtgacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaatttt-tcttaattcttttcatgtttagaagttcttctgattctgaat 19099166  T
Q  198 tttt--aataaagtttagctacacaaaaagaatt 229  Q
    ||||  ||| ||||||||||| ||||||| ||||    
T  19099165 tttttcaatgaagtttagctaaacaaaaaaaatt 19099132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 40779209 - 40779393
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttt-cgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||||||||| ||||||  ||||||||||||| |||||||||| || |||||||||| |||||||  ||||| || | | ||||    
T  40779209 ttaataagtcaatttgaaaaactattccattgag-gaatcacaacaatcatttcttttttcgtataaaccattcgttttcc--tttcccacaatggagga 40779305  T
Q  100 gtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttct 187  Q
    ||||||  || |||||||||| |||||||||||| |||| |||||||||||||||| |||| |||  |||| ||||||||| |||||||    
T  40779306 gtgacaaatcgaaacgacatcattaggtaaatttcacctctctttcacttaatttt-ttttatttcatttcatgtttaaaatttcttct 40779393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 13474647 - 13474800
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| ||||  | |||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  13474647 ttaatcagtcaatttgaaaagttgtttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 13474746  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||| | ||||||||||| |||||| |||||||||||  ||||||||||||||||    
T  13474747 gtgacaaatccaaacgacaccgttagataaattttacc--tctttcacttaatttt 13474800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 40956340 - 40956475
Alignment:
Q  11 aatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attcc 109  Q
    ||||| ||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||| |||||||||||||| || | | | ||||||| | |||    
T  40956340 aatttgaaaaactatttcattaaaagaatcacaacaatcatttcttttttgcatacaccattcgttttcccctttcccacaatggaagagtgacaaatcc 40956439  T
Q  110 aaacgacatcgttaggtaaattttacctatctttca 145  Q
    |||||||  |||||| ||||||| |||| |||||||    
T  40956440 aaacgacgccgttagataaatttcacctctctttca 40956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 8379453 - 8379267
Alignment:
Q  37 aatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcgttaggtaaattttac 135  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||||| |||| || ||| | ||||||| | ||||||||||| ||||  |||||||| ||    
T  8379453 aatcacaacaataatttctttttcgcataatccattcgttttcccc-ttcccacaacggatgagtgacaaatccaaacgacaccgttgcgtaaatttcac 8379355  T
Q  136 ctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctacacaaaaa 224  Q
    || ||||||||||||| || |||| ||| ||||| |||||| ||| ||||||||  || | |||||||| |||  || |||||||||||    
T  8379354 ctctctttcacttaatatt-ttttttttcgtttcatgtttagaagatcttctgatacttattttttaatgaagcataactacacaaaaa 8379267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 13656227 - 13656380
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| ||||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| |||| ||  ||||    
T  13656227 ttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttctacaacagagga 13656326  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||| | | | ||||||||| |||||| ||||||| |||  ||||| ||||||||||    
T  13656327 gtgtcaaattcaaacgacaccgttagataaatttcacc--tcttttacttaatttt 13656380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 224
Target Start/End: Original strand, 26312027 - 26312228
Alignment:
Q  27 tcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgtttt-cccctttcctacgacgta---ggagtgacat-tccaaacgacatcg 120  Q
    |||||||||||||||||||||| |||| ||| |||| |||||||||| ||||| ||||||| | || ||  |   |||||||||  ||||||||||| ||    
T  26312027 tcattgaaagaatcacaacaatcatttttttcttcgtataaaccattcgttttaccccttttccacaacagatcaggagtgacaaatccaaacgacaccg 26312126  T
Q  121 ttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt-aataaagtttagctacac 219  Q
    |||| ||||||| ||||  ||||||||||||||| ||||  ||  |||| |||||| || ||||||||| ||||| ||||| ||| || |||||||||||    
T  26312127 ttagataaatttcacct--ctttcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgatttttttaatgaaatttagctacac 26312223  T
Q  220 aaaaa 224  Q
    |||||    
T  26312224 aaaaa 26312228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 931420 - 931478
Alignment:
Q  29 attgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcc 87  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||||    
T  931420 attgaaagaatcacaataatcatttctttttcgcataaaccattcgttttctcctttcc 931478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 26377800 - 26377598
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacat 118  Q
    ||||||||||||||||||||||||||| |||| |||  ||||||||||||||| ||||| || |||   || ||  ||||||||| | |||||||||||     
T  26377800 ctatttcattgaaagaatcacaacaatcatttttttccttcgcataaaccattcgttttaccttttttcacaactgaggagtgacaaatccaaacgacac 26377701  T
Q  119 cgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-ctttttaataaagtttagctac 217  Q
    |||||| |||||||  | | ||||||||||||| |  ||||  ||  |||| |||||| || ||||||||| |||||  |||||||| || || ||||||    
T  26377700 cgttagataaattt--catctctttcacttaatat--ttttaattcctttcatgtttagaacttcttctgattctgatttttttaatgaaattgagctac 26377605  T
Q  218 acaaaaa 224  Q
    |||||||    
T  26377604 acaaaaa 26377598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 16515549 - 16515599
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttt 59  Q
    ||||||| ||||| ||||| |||||||||||||||||||||||||||||||    
T  16515549 tcaatttgaaaaattattttattgaaagaatcacaacaattatttcttttt 16515599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 23069350 - 23069464
Alignment:
Q  109 caaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaag 208  Q
    ||||||||| |||||||||||||| || | ||||||| |||||||| |||| ||  ||||| | |||| |||||||||| | | ||| |||||||| |||    
T  23069350 caaacgacaccgttaggtaaatttcacatttctttcatttaatttt-ttttattacgtttcatatttagaagttcttctaattttgattttttaatgaag 23069448  T
Q  209 tttagctacacaaaaa 224  Q
     ||||||||| |||||    
T  23069449 cttagctacaaaaaaa 23069464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 4177351 - 4177435
Alignment:
Q  134 acctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctacac 219  Q
    |||||| |||| ||||||||| |||| ||||||||| |||||| |||||||||||| | ||| |||||||| ||| ||| ||||||    
T  4177351 acctatttttcgcttaatttt-ttttattttgtttcatgtttagaagttcttctgattatgattttttaatgaagcttaactacac 4177435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 37046906 - 37047024
Alignment:
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga----cttttta 202  Q
    ||||||||||| |||||| ||||||| |||  ||||||| |||||||| ||||  ||| |||| |||||| || ||||||| | |||||     ||||||    
T  37046906 tccaaacgacaccgttagataaatttcacc--tctttcatttaatttt-ttttaatttctttcatgtttagaacttcttctaattctgatttttttttta 37047002  T
Q  203 ataaagtttagctacacaaaaa 224  Q
    ||||| ||||||||||||||||    
T  37047003 ataaaatttagctacacaaaaa 37047024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 36718614 - 36718535
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgtttt 78  Q
    ||||| |||||||||  |||  ||||| ||||||||||||||||| || |||| |||  ||||||||||||||| |||||    
T  36718614 ttaatcagtcaatttgtaaagttattttattgaaagaatcacaaccataattttttttcttcgcataaaccattcgtttt 36718535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 46904759 - 46904988
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||    
T  46904759 ttaatcagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttttgcataaaccttttatttttccctttcctacgacgtaggag 46904858  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| ||||    
T  46904859 tgacattccaaacgacaccgttaggtaaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttcttattctgattttt 46904958  T
Q  201 taataaagtttagctacacaaaaagaattg 230  Q
    |||| ||| || |||||||| ||| |||||    
T  46904959 taatgaagcttcgctacacataaaaaattg 46904988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 27303212 - 27303425
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacattc 108  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  27303212 tcaatttgaaaagctatttcattgaaagaatcacaacaattatttctttttcgcataaactatttgttttccc-tttcctacgacgtaggagtgacattc 27303310  T
Q  109 caaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaag 208  Q
     |||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||    
T  27303311 -aaacgacaccattaggtaaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttttaatgaag 27303409  T
Q  209 tttagctacacaaaaa 224  Q
     ||| ||| |||||||    
T  27303410 cttaactatacaaaaa 27303425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7767080 - 7767323
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcg---cataaaccatttgttttcccctttcctacgacgtag 97  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||    ||||||| ||| |||||||| ||||||| |||||||    
T  7767080 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaattatttttttttcttcacataaactattcgttttcccatttcctaagacgtag 7767179  T
Q  98 gagtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    ||||||||||||||| ||||  ||||||||||||| || | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  7767180 gagtgacattccaaatgacacagttaggtaaatttcacatctctttcacttaattttattttattttgtttcatgtttaaaagttcttctgattctgact 7767279  T
Q  198 ttttaataaagtttagctacacaaaaagaattgcgttttcatct 241  Q
    ||||||| ||| ||||||||||| ||| || |||||||| ||||    
T  7767280 ttttaatgaagcttagctacacacaaaaaaatgcgtttttatct 7767323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 51146954 - 51147177
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttt-tcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||| |||||||| |||| |||||| ||| |    
T  51146954 ttaatcagtcaatttaaaaaactattttattgaaagaatcacaacaattattttttctctcgcataaaccattcgttttcccttttc-tacgacatagaa 51147052  T
Q  100 gtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||||| | ||| |||    
T  51147053 gtgacattccaaacgacaccgttaggtaaattttatctctctttcacttcattttattttgttttgtttcgtgtttaagagttcttctgattatgatttt 51147152  T
Q  200 ttaataaagtttagctacacaaaaa 224  Q
    ||||| ||| ||| |||| ||||||    
T  51147153 ttaatgaagcttacctacgcaaaaa 51147177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 42009309 - 42009156
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||    
T  42009309 ttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaattatttctttttcacataaaccattcgttttcccctttcctacgacgtaagag 42009210  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||||||||||||| |||||||| ||||||| |||| ||||||||||| ||||    
T  42009209 tgacattccaaacgaaatcgttagataaatttcacctctctttcacttagtttt 42009156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 50677361 - 50677187
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||    
T  50677361 ttaatcagtcaatttgaaaaactatttcattgaaacaatcacaacaattatttctttttcgcataaacaattcgttttcccctttcctacgatgtaggag 50677262  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgttt 175  Q
    ||||||||||||||| |  ||||| ||||||| | || ||||||||||   ||||||||||||| |||| |||||    
T  50677261 tgacattccaaacgaaactgttagataaatttcatctctctttcactttgctttattttgttttatttcatgttt 50677187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 36538233 - 36538119
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||    
T  36538233 ttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttcccctttcctacgaagcaggag 36538134  T
Q  101 tgacattccaaacga 115  Q
    |||||||| ||||||    
T  36538133 tgacattctaaacga 36538119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25599133 - 25598905
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| || | || ||||||||||||||| ||||| |||||| | || ||  |||||    
T  25599133 ttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaatcatgttttcttcgcataaaccattcgttttacccttttccacaacagaggag 25599034  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgt----tttgtttcgtgtttaaaagttcttctgaatctga 195  Q
    |||| | | ||||||||| |||||| ||||||| |||  |||||||||||||||| |||| |    ||| |||| |||||| |||||||||||| |||||    
T  25599033 tgacaaattcaaacgacaccgttagataaatttcacc--tctttcacttaatttttttttttttaatttctttcatgtttagaagttcttctgattctga 25598936  T
Q  196 --ctttttaataaagtttagctacacaaaaa 224  Q
       |||||||| |||||||||||||||||||    
T  25598935 ttttttttaatgaagtttagctacacaaaaa 25598905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 40152170 - 40151955
Alignment:
Q  8 gtcaatttaaaaaactatttcattgaaa-gaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgaca- 105  Q
    |||||||| ||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||| |||||||||||| || ||| |||| ||| |     
T  40152170 gtcaatttgaaaaactatttcattaaaacgaatcacaacaatcatttcttttgcgcataaaccatttg-tttcccctttcccacaacggaggaatgatac 40152072  T
Q  106 ttccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaata 205  Q
     ||||||| ||| | |||||||||||| |||| ||||||| |||||||| |||| ||| ||||| | |||||||||| || ||| ||||| ||||||||     
T  40152071 atccaaacaacacctttaggtaaatttcacctctctttcatttaatttt-ttttatttcgtttcatatttaaaagtttttatgattctgattttttaatg 40151973  T
Q  206 aagtttagctacacaaaa 223  Q
    ||| ||| ||||||||||    
T  40151972 aagcttaactacacaaaa 40151955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 48627070 - 48626842
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-a 105  Q
    ||||||||| |||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||| ||||| ||| |||| ||  || |  |||||| |    
T  48627070 agtcaatttgaaaatctatttcattgaaagaatcacaacaatcatttatttttcacataaaccattcgtttt-cccattcccacagcggataagtgacaa 48626972  T
Q  106 ttccaaacgacatcgttaggtaaattttacctatctttcacttaattttattt-tgttttgtttcgtgtttaaaagttcttctgaatctgactttttaat 204  Q
     |||||| ||||  |||| ||||||| ||||| ||||||||||| |||| ||| | ||| ||||| |||||| ||| |||||||| ||| | ||||| ||    
T  48626971 atccaaatgacactgtta-gtaaattctacctctctttcacttatttttttttgtatttcgtttcatgtttagaagctcttctgattctaatttttttat 48626873  T
Q  205 aaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||||||| ||||||||||| |||||||||||    
T  48626872 aaagtttaactacacaaaaa-aattgcgtttt 48626842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 29387793 - 29387601
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-at 106  Q
    ||||||| ||||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| |||| |   ||||||||| |     
T  29387793 tcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttctacaatagaggagtgacaaa 29387694  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    ||||||| ||| |||||| ||||||| |||  |||||||||||||||| ||||   || |||| |||||| |||||||||||| ||||| |||||    
T  29387693 tccaaacaacaccgttagataaatttcacc--tctttcacttaattttttttttaattctttcatgtttataagttcttctgattctgatttttt 29387601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28132782 - 28132559
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| || ||||||||||||||| ||||| || ||| | || ||  |||||    
T  28132782 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcattttttcttcgcataaaccattcgttttaccattttccacaacagaggag 28132683  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact-- 197  Q
    |||| | | ||||||||  |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| | ||| |      
T  28132682 tgacaagttcaaacgacgccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattttgatttc 28132586  T
Q  198 ttttaataaagtttagctacacaaaaa 224  Q
    ||||||| || ||||||||||||||||    
T  28132585 ttttaatgaaatttagctacacaaaaa 28132559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 51939603 - 51939377
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| |||  ||| ||||||||||| ||||| |||||| | || || |||     
T  51939603 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcattttttttcttcacataaaccattcgttttacccttttccacaacataga 51939504  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-- 195  Q
    |||||| | |||||||||||  ||| | ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||| | |||||      
T  51939503 agtgacaaatccaaacgacacagttggttaaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctcattctgatt 51939407  T
Q  196 -ctttttaataaagtttagctacacaaaaa 224  Q
      |||||||| || ||||||||||||||||    
T  51939406 tttttttaatgaaatttagctacacaaaaa 51939377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 52655170 - 52654945
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| |||  |||||||||||||| ||||| |||||| | || || |||||    
T  52655170 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcctcgcataaaccattcgttttacccttttccacaacatagga 52655071  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--c 196  Q
    ||||| | | ||||||| | |||||| ||||||| |||  ||||||||||| |||| ||||  ||  |||| |||||| |||||||||||| ||| |       
T  52655070 gtgacaaattcaaacgataccgttagataaatttcacc--tctttcacttattttttttttaattcctttcatgtttagaagttcttctgattctaattt 52654973  T
Q  197 tttttaataaagtttagctacacaaaaa 224  Q
    |||||||| || |||| |||||||||||    
T  52654972 tttttaatgaaatttaactacacaaaaa 52654945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 13401476 - 13401699
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttt--cgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| ||||||||| |||| ||||||||||| ||||||||||||||| |||| |||||  ||||||||||||||||||| |||||| | || ||  |||    
T  13401476 ttaatcagtcaatttgaaaagctatttcattggaagaatcacaacaatcatttttttttcccgcataaaccatttgttttacccttttccacaacagagg 13401575  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    |||| | | | ||||||||| ||| || ||||||| |||  ||||||| |||||||| ||||  ||  |||| |||||| |||||||||||| |     |    
T  13401576 agtgccaaattcaaacgacaccgtaagataaatttcacc--tctttcaattaatttt-ttttaattcctttcatgtttagaagttcttctgatttcattt 13401672  T
Q  198 ttttaataaagtttagctacacaaaaa 224  Q
    ||||||| ||||||| |||||||||||    
T  13401673 ttttaatgaagtttaactacacaaaaa 13401699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 21784831 - 21784677
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| ||| |||||  ||| ||||||||||||||||||||||||||| |||| |||  ||||||||||||||| ||||| |||||| | || ||  |||    
T  21784831 ttaatcagttaatttggaaagctatttcattgaaagaatcacaacaatcattttttttcttcgcataaaccattcgttttacccttttccacaacagagg 21784732  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    |||||| | ||||||||||  |||||| ||||||| |||  ||||||||||||||||    
T  21784731 agtgacaaatccaaacgacgccgttagataaatttcacc--tctttcacttaatttt 21784677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 23164598 - 23164394
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatc 119  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| || ||| | || ||  ||||||||| | ||||||||||| |    
T  23164598 ctatttcattgaaagaatcacaacaataatttttttcttcgcataaaccattcgttttacctttttccacaacagaggagtgacaaatccaaacgacacc 23164499  T
Q  120 gttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga---ctttttaataaagtttagcta 216  Q
    ||| | ||||||| |||  |||||||||||||||| ||||  ||  |||| | |||| |||||||||||| ||| |    |||||||| || ||||||||    
T  23164498 gttggataaatttcacc--tctttcacttaatttt-ttttaattcttttcatatttagaagttcttctgattctaatttttttttaatgaaatttagcta 23164402  T
Q  217 cacaaaaa 224  Q
    ||||||||    
T  23164401 cacaaaaa 23164394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24252637 - 24252862
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  |||  ||||||| || ||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  | ||    
T  24252637 ttaatcagtcaatttggaaagttatttcagtgcaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagatga 24252736  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--c 196  Q
    ||||| | ||||||||||  |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || ||||||||| ||| |       
T  24252737 gtgacaaatccaaacgaccccgttagataaatttcacc--tctttcacttaatttttttttaattcctttcatgtttagaacttcttctgattctaattt 24252834  T
Q  197 tttttaataaagtttagctacacaaaaa 224  Q
    |||||||| || ||||||||||||||||    
T  24252835 tttttaatgaaatttagctacacaaaaa 24252862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 46791744 - 46791591
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||||   ||  |||||| | || ||  ||||    
T  46791744 ttaatcagtcaatttggaaaactatttcattgcaagaatcacaacaatcatttttttcttcgcataaaccattcacttgacccttttccacaacagagga 46791645  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||| | ||||||||||| |||||| ||||||| |||  ||||||||||||||||    
T  46791644 gtgacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaatttt 46791591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 8364189 - 8364340
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| |||||||||  |||  |||||||||||||||||||||||||| |||| |||  |||||| |||||||||||||| |||||| | || ||  |||    
T  8364189 ttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcattttttttcttcgcacaaaccatttgttttacccttttccacaacagagg 8364288  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaat 151  Q
    || ||| | ||||||||||| |||||| ||||||| |||  |||||||||||||    
T  8364289 agagacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaat 8364340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 18408208 - 18408395
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaatta-tttctttttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||| | ||||||||||||||||||||| | ||| |||||||||||||| ||| ||||| |||||| | || ||  || |    
T  18408208 ttaatcagtcaatttgaaaagctaatccattgaaagaatcacaacaatcattttttttttcgcataaacaattcgttttacccttttccacaacagagca 18408307  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctga 189  Q
    ||||| | ||||||||||| |||| | ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| ||||||||||||    
T  18408308 gtgacaaatccaaacgacaccgtttgataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctga 18408395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 236
Target Start/End: Complemental strand, 43905861 - 43905666
Alignment:
Q  40 cacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacat-tccaaacgacatcgttaggtaaattttaccta 138  Q
    ||||||||| ||||||||||| |||||||||||  |||| |||||||| ||  || |  |||||||  |||||| |||| |||||| |||||| |||||     
T  43905861 cacaacaatcatttctttttcacataaaccattcatttttccctttcccacagcggataagtgacaaatccaaatgacaccgttag-taaattctacctc 43905763  T
Q  139 tctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||||||||||||||| || | ||| ||||| |||||| ||| |||| ||| |||   |||||| ||||| ||| | ||||||||| |||||||||||    
T  43905762 tctttcacttaatttttttgtatttcgtttcatgtttagaagctcttatgattctatttttttagtaaagcttaacaacacaaaaa-aattgcgtttt 43905666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 1255090 - 1255013
Alignment:
Q  8 gtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcc 87  Q
    ||||||||| |||  |||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||||||||||    
T  1255090 gtcaatttagaaagttatttcattgaaagaatca--acaataatttgtttttcgcataaaccattcgttttcccctttcc 1255013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 6715457 - 6715609
Alignment:
Q  2 taattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttc-ctacgacgtaggag 100  Q
    |||| |||||||||  |||  ||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| ||||||  | || ||  |||||    
T  6715457 taatcagtcaattttgaaagttatttcattgaaagaatcataacaatcatttttttttcgcataaaccattcgttttaccctttttccacaacagaggag 6715556  T
Q  101 tgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    |||||  ||||||||||| | |||  ||||||| ||||  |||||||||||||||    
T  6715557 tgacaaatccaaacgacaccattatataaatttcacct--ctttcacttaatttt 6715609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 15987239 - 15987321
Alignment:
Q  23 tatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgaca 105  Q
    ||||||||| ||||||| ||||| || |||| |||||||||||||||||| ||||| |||||||| || ||| ||||||||||    
T  15987239 tatttcattaaaagaattacaactatcatttatttttcgcataaaccattcgtttttccctttcccacaacggaggagtgaca 15987321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 41707102 - 41706946
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt----ttcgcataaaccatttgttttcccctttcctacgacgta 96  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| |||    ||||||||||||||| | ||| ||||||   ||  |  |    
T  41707102 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcattttttttttcttcgcataaaccattcgctttaccctttttcacaccaga 41707003  T
Q  97 ggagtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    |||||||| | ||||||||||| |||||| ||||||| |||   |||||||||||||||    
T  41707002 ggagtgacaaatccaaacgacaacgttagataaatttcacc--cctttcacttaatttt 41706946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 224
Target Start/End: Complemental strand, 27729785 - 27729592
Alignment:
Q  32 gaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcgttaggtaaa 129  Q
    ||||||||||||||||| |||  ||| ||||||||||||||| ||||| ||||||   || || ||| |||||| | |||||||||||  ||||| ||||    
T  27729785 gaaagaatcacaacaatcattattttcttcgcataaaccattcgttttaccctttttcacaacatagaagtgacaaatccaaacgacactgttagataaa 27729686  T
Q  130 ttttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaataaagtttagctacacaaaaa 224  Q
    ||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| | | |   |||||||| || ||||||||||||||||    
T  27729685 tttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattttaattttttttaatgaaatttagctacacaaaaa 27729592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 236
Target Start/End: Complemental strand, 27110861 - 27110682
Alignment:
Q  58 ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttat 156  Q
    ||||||||||||||| ||||| |||||| | || ||  ||||||||| | | ||||||||| |||||| ||||||| |||  |||||||||||||||| |    
T  27110861 ttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaattcaaacgacaccgttagataaatttcacc--tctttcacttaatttt-t 27110765  T
Q  157 tttgttttgtttcgtgtttaaaagttcttctgaatctga---ctttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||  ||  |||| |||||| || ||||| ||| |||||    |||||||| || |||||||||||||||| |||| ||||||    
T  27110764 tttaattcctttcatgtttagaacttcttatgattctgatttatttttaatgaaatttagctacacaaaaaaaattacgtttt 27110682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 1649870 - 1649775
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgaca 105  Q
    ||||||| |||| |||||||| ||||||  || ||||||| | |||||||| |||||| ||||||||||| ||||||||||  ||| ||||||||||    
T  1649870 tcaatttgaaaatctatttcactgaaagcttcgcaacaatcaattcttttttgcataagccatttgtttt-ccctttcctataacggaggagtgaca 1649775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 20762087 - 20762291
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatc 119  Q
    |||||||||||||||||||| |||||| |||| |||  |||||||||||||| ||||| |||||| | || |   ||||||||| | | ||||||| | |    
T  20762087 ctatttcattgaaagaatcataacaatcatttttttcgtcgcataaaccattcgttttacccttttccacaatagaggagtgacaaatacaaacgatacc 20762186  T
Q  120 gttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaataaagtttagctac 217  Q
    |||   ||||||| |||  |||||||||||||||| ||||  ||  |||| | |||| ||||||||| || |||||   |||||||| ||||||| ||||    
T  20762187 gttgaataaatttcacc--tctttcacttaatttttttttaattcatttcatatttagaagttcttccgattctgattttttttaatgaagtttaactac 20762284  T
Q  218 acaaaaa 224  Q
    |||||||    
T  20762285 acaaaaa 20762291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 21596352 - 21596566
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||| ||||  ||| ||||||||||  ||||||||||||||| |||| ||||| ||  |||||||||||||| |||||||| || | | |||||    
T  21596352 ttaatcagtcgatttggaaagctatttcattacaagaatcacaacaatcatttattttttgctcaaaccatttgtttttccctttcc-acaatggaggag 21596450  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| |   ||||||||   ||||||||||||| |  | ||||||| |||||| | |||| ||   |||| |||||| |||||||| ||| ||||| |||    
T  21596451 tgacaaaatcaaacgacgctgttaggtaaatttcatttttctttcatttaattct-ttttattacatttcatgtttagaagttcttttgattctgatttt 21596549  T
Q  200 ttaataaagtttagcta 216  Q
    ||||| ||| |||||||    
T  21596550 ttaatgaagcttagcta 21596566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 23067766 - 23067621
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcaca-acaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtg-a 103  Q
    ||||||||| ||||  ||||||||| ||||||||||| ||||| |||| ||  ||||||||||||||||||||| |||||| | || ||  ||||||| |    
T  23067766 agtcaatttgaaaagttatttcatttaaagaatcacacacaatcattttttaattcgcataaaccatttgttttacccttttccacaacagaggagtgaa 23067667  T
Q  104 cattccaaacgacatcgttaggtaaattttacctatctttcacttaat 151  Q
     | |||||| |||| |||||| ||||||| |||  |||||||||||||    
T  23067666 aaatccaaatgacaccgttagataaatttcacc--tctttcacttaat 23067621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 54430569 - 54430758
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| ||||  ||||||||| |||||||  ||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  | ||    
T  54430569 ttaatcagtcaatttgaaaagttatttcattaaaagaattgcaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacaaacga 54430668  T
Q  100 gtgac-attccaaac-gacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctga 189  Q
    ||||| | ||||||| || | |||||| ||||||| |||  | |||||||||||||| ||||  ||  |||| |||||| ||||||||||||    
T  54430669 gtgacaaatccaaacggataccgttagataaatttcacc--tttttcacttaatttttttttaattcctttcatgtttagaagttcttctga 54430758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 19965927 - 19965841
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcac-aacaattatttctttttcgcataaaccatttgttttcccctttcc 87  Q
    ||||||||| || || |||| |||||||||| |||||||||| |||||| |||| |||  ||||||||||||| |||||| |||||||    
T  19965927 ttaattagttaaattgaaaagctatttcattaaaagaatcacaaacaatcattt-tttcccgcataaaccattcgttttctcctttcc 19965841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 19965804 - 19965737
Alignment:
Q  121 ttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctga 189  Q
    |||||||||||| |||| |||||||||| ||||| |||| |||  |||| |||||| ||||||||||||    
T  19965804 ttaggtaaatttcacctctctttcactt-atttttttttatttcctttcatgtttagaagttcttctga 19965737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 29480678 - 29480448
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacat 106  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  29480678 agtcaatttgaaaaattatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgtcttcccctttcttacgacataggagtgacat 29480579  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-ctttttaata 205  Q
    ||||||||||| ||||||||||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||  ||||||||     
T  29480578 tccaaacgacaccgttaggtaaagttcacctctctttcacttaattttattttgttttgtttcgtatttaaaagttcttctgattctgatttttttaatg 29480479  T
Q  206 aagtttagctacacaaaaagaattgcgtttt 236  Q
    ||| |||| ||||||||||||||||| ||||    
T  29480478 aagattaggtacacaaaaagaattgcatttt 29480448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13997331 - 13997565
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||    
T  13997331 ttaatgagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgttttccc-tttcctacgacgtatgag 13997429  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||||||||||| |||   |||||||||||| || | ||||||||||||| || |||| |||||||| |||||||||||||||||||| ||||| ||||    
T  13997430 tgacattccaaacaacacatttaggtaaatttcacatctctttcacttaatcttgttttattttgttttgtgtttaaaagttcttctgattctgattttt 13997529  T
Q  201 taataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||| ||| |||||||||||||||||||||||||||    
T  13997530 taatgaagcttagctacacaaaaagaattgcgtttt 13997565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36059952 - 36059717
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||| |||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||||||| ||||| |||||||| |||    
T  36059952 ttaatcagttaatttaaaaagctatttcattgaaagaaccacaacaatcatttcttttttgcataaaccattcgttttcccttttcccacgacgtatgag 36059853  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||| ||||    
T  36059852 tgacattccaaacgacgccgttacgtaaattttacctctctttcacttaattttattttattttgtttcatgtttagaagttcttgtgaatctgattttt 36059753  T
Q  201 taataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||| ||||||||||||| ||||| |||||||||||    
T  36059752 taatgaagtttagctacaaaaaaaaaattgcgtttt 36059717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 1418926 - 1419145
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||  ||||||||| |||||| |||    
T  1418926 ttaatcagtcaatttgtaaagctatttcattgaaagaatcacaacaattatttctttttcgcataaactattcattttttcctttcctatgacgtatgag 1419025  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    |||||||||||| |||| |||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||    
T  1419026 tgacattccaaatgacaccgttaggtaaatttcacttctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattttgactttt 1419125  T
Q  201 taataaagtttagctacaca 220  Q
    |||| || |||| |||||||    
T  1419126 taatgaaatttaactacaca 1419145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39081415 - 39081636
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||||    
T  39081415 ttaatcagtcaatttgaaaagctatttcattgaaagaattacaacaattatttctttt-catataaaccattagttttcccctttcctacgacgtaggag 39081513  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    |||||||||||| |||| | |||||||||||| |||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||| |||     
T  39081514 tgacattccaaatgaca-cattaggtaaatttcacctctctttcacttaattttattttgttttgtttcatatttaaaagttcttatgattctgatttta 39081612  T
Q  201 taataaagtttagctacacaaaaa 224  Q
    |||| ||| ||| |||||||||||    
T  39081613 taatgaagcttaactacacaaaaa 39081636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 17117691 - 17117469
Alignment:
Q  2 taattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagt 101  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||| || ||| |  |||    
T  17117691 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttctttttcatataaaccattcgttttcccctttcccacaacggataagt 17117592  T
Q  102 gac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||| | ||||||||||| ||||| ||||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||| |||||||| ||||| ||||    
T  17117591 gacaaatccaaacgacaccgtta-gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctgattttt 17117493  T
Q  201 taataaagtttagctacacaaaaa 224  Q
    |||||||| |||||||||||||||    
T  17117492 taataaagcttagctacacaaaaa 17117469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 38599427 - 38599592
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacattc 108  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||| |||||  ||||||||||| |||||||||||||| |||||||| ||||| ||||     
T  38599427 tcaatttgaaaaactatttcattgaaagaatcaaaacaattatttatttttt-cataaaccattcgttttcccctttcccacgacgtatgagtggcattt 38599525  T
Q  109 caaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgttt 175  Q
    ||||||||| |||||||||||||| | || ||||||||||||||||||||| |||| |||| |||||    
T  38599526 caaacgacaccgttaggtaaatttcatctctctttcacttaattttattttattttatttcatgttt 38599592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 18172979 - 18172755
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-att 107  Q
    ||||||| |||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || ||| |  |||||| | |    
T  18172979 tcaatttgaaaagctatttcatcgaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcccacaacggataagtgacaaat 18172880  T
Q  108 ccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaa 207  Q
    |||||||||  |||| |||||||| ||||| ||||||||  |||||| || | ||| ||||| |||||| ||  |||||||| ||||| |||||||||||    
T  18172879 ccaaacgacgccgtt-ggtaaattctacctctctttcac--aatttttttgtatttcgtttcatgtttagaaactcttctgattctgattttttaataaa 18172783  T
Q  208 gtttagctacacaaaaagaattgcgtttt 236  Q
    | || |||||||||||| |||||||||||    
T  18172782 gcttggctacacaaaaa-aattgcgtttt 18172755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 1226281 - 1226085
Alignment:
Q  33 aaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacat-tccaaacgacatcgttaggtaaatt 131  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||  |  || || ||| |||| | | |  |||||||||||||||||||||||||    
T  1226281 aaagaatcacaacaatcatttctttttcgcataaaccatttgttttcc--taccccacaacgaaggaatcataaatccaaacgacatcgttaggtaaatt 1226184  T
Q  132 ttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-ctttttaataaagtttagctacacaaaaagaatt 229  Q
    | | || |||||||||||||||| |||| ||| ||||| |||||| |||||||||| | |||||  |||||||| ||||||||||||||||||| ||||    
T  1226183 tcatctctctttcacttaatttttttttatttcgtttcatgtttagaagttcttctaattctgatttttttaatgaagtttagctacacaaaaaaaatt 1226085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 15457517 - 15457753
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttt-cgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| |||||| |||||||||||||||||||| |||| ||||| | || |||||||| |||||||||||||| || ||| |  |    
T  15457517 ttaatcagtcaatttgaaaagctattttattgaaagaatcacaacaataattttttttttcacacaaaccattcgttttcccctttcccacaacggacaa 15457616  T
Q  100 gtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    ||||||  ||||||||||   ||||| |||||| || || |||||||||||||||| || | ||| ||||| |||| | ||| |||||| | | ||| ||    
T  15457617 gtgacaaatccaaacgacgctgttag-taaattctatctctctttcacttaatttttttgtttttcgtttcatgttcagaagctcttcttattttgattt 15457715  T
Q  199 tttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  15457716 tttaataaagcttagctacacaaaaagaattgtgtttt 15457753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26151794 - 26151570
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| |||| ||  ||||    
T  26151794 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttctacaacagagga 26151695  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--c 196  Q
    ||||| | ||||||||||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || ||||||||| |||||       
T  26151694 gtgacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaatttt-ttttaattactttcatgtttagaacttcttctgattctgattt 26151598  T
Q  197 tttttaataaagtttagctacacaaaaa 224  Q
    |||||||| || ||||||||||||||||    
T  26151597 tttttaatgaaatttagctacacaaaaa 26151570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 38985748 - 38985521
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-att 107  Q
    ||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| | || ||| |  |||||| | |    
T  38985748 tcaatttgaaaagctatttcattgaaagaatcacaacaatcatttctttttcacataaaacatttgttttccccttttccacaacggataagtgacaaat 38985649  T
Q  108 ccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaa 207  Q
    ||||| |||  ||||| || |||| ||| | |||||||||||||||| || | ||| ||||| | |||| ||  |||||||| ||||| |||||||||||    
T  38985648 ccaaaagacgccgtta-gtgaattctacatctctttcacttaatttttttgtatttcgtttcatttttagaaactcttctgattctgattttttaataaa 38985550  T
Q  208 gtttagctacacaaaaagaattgcgtttt 236  Q
    | ||| ||||||| ||| |||| ||||||    
T  38985549 gcttaactacacacaaaaaattacgtttt 38985521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 21747277 - 21747055
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||| || ||  |  ||    
T  21747277 ttaatcagtcaatttaaaatactatgtcattgaaagaatcacaacaataatttctttttcacataaaccattcgtttttccctttcccacaacagataag 21747178  T
Q  101 tga-cattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||  | | ||||||||  ||||| ||||||| ||||| ||||||||| |||||| || | ||| ||||| |||||||||| |||| ||| |||   |||    
T  21747177 tgagaaattcaaacgacgccgtta-gtaaattctacctctctttcactgaatttt-ttgtatttcgtttcatgtttaaaagctcttttgattctattttt 21747080  T
Q  200 ttaataaagtttagctacacaaaaa 224  Q
    ||||||||| |||  ||||||||||    
T  21747079 ttaataaagcttaattacacaaaaa 21747055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 18916093 - 18915877
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtg--acat 106  Q
    ||||||| |||| |||||||| ||||||||||||| |||| ||||||||||| ||||||| ||||||||| |||||||| || ||| |  ||||  | |     
T  18916093 tcaatttgaaaagctatttcactgaaagaatcacagcaatcatttctttttcacataaactatttgtttttccctttcccacaacggataagtgataaaa 18915994  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataa 206  Q
    || |||||||  ||||| ||||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||| |||||||| |||   ||||||||||    
T  18915993 tcgaaacgacgccgtta-gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctatttttttaataa 18915895  T
Q  207 agtttagctacacaaaaa 224  Q
    || ||| || ||||||||    
T  18915894 agcttaactgcacaaaaa 18915877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 45619014 - 45619192
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatc 119  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||| | || ||  ||||||||| | ||||||||||| |    
T  45619014 ctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccatttgttttacccttttccacaacagaggagtgacaaatccaaacgacacc 45619113  T
Q  120 gttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    ||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || ||||||||| ||||| |||||    
T  45619114 gttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgatttttt 45619192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4856010 - 4856234
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||| |||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||  ||||| | || ||  ||||    
T  4856010 ttaatcagtgaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaaccttttccacaacagagga 4856109  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--c 196  Q
    ||||| | |||||||||||| ||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || ||||||||| |||||       
T  4856110 gtgacaaatccaaacgacattgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgattt 4856206  T
Q  197 tttttaataaagtttagctacacaaaaa 224  Q
    |||||||| || ||||||||||||||||    
T  4856207 tttttaatgaaatttagctacacaaaaa 4856234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 41096585 - 41096398
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||| |||| |||  ||||||| ||||||| ||||| |||||| | || ||  |||    
T  41096585 ttaatcagtcaatttggaaaactatttcattgaaagaatcacaacaatcattttttttcttcgcattaaccattcgttttacccttttccacaacagagg 41096486  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttct 187  Q
    |||||| | ||||||||||| |||||| ||||||| |||  ||||||||||| |||| ||||  ||  |||| |||||| ||||||||||    
T  41096485 agtgacaaatccaaacgacaccgttagataaatttcacc--tctttcacttattttttttttaattcctttcatgtttagaagttcttct 41096398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 42411605 - 42411406
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctt-tttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    |||||||||||||||  ||| |||||||||| |||||||||||||||| |||| ||  ||||||||||||||| ||||| ||||||   || ||  ||||    
T  42411605 ttaattagtcaatttggaaagctatttcatttaaagaatcacaacaatcattttttacttcgcataaaccattcgttttaccctttttcacaacagagga 42411506  T
Q  100 gtg-acattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    ||| | | ||||||||||| |||||| ||||||| |||  |||||||||||||| | ||||  ||| |||| ||||||||||||||||||| ||||| ||    
T  42411505 gtgaaaaatccaaacgacaccgttagataaatttaacc--tctttcacttaattat-ttttaatttctttcatgtttaaaagttcttctgattctgattt 42411409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 36481432 - 36481611
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatc 119  Q
    ||||||||||||||||||||||||||| |||| ||| |||||||||||||||  |||| |||||| | || ||  ||||||||| | ||||||||||| |    
T  36481432 ctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcattttacccttttccacaacagaggagtgacaaatccaaacgacacc 36481531  T
Q  120 gttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    | ||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| ||||| |||||    
T  36481532 ggtagataaatttcacc--tctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgatttttt 36481611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31273213 - 31272990
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||  || ||||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||| | |||||| || ||  |  ||    
T  31273213 ttaatcagtcaatttggaatactatttcattaaaagaatcataacattcatttctttttcgcataaaccatttgtttttctctttcccacaacagaaaag 31273114  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | |||||||||||  ||||||||||||| || | |||||| ||||||||| | ||  || ||||  | |||| |||||||||||| | ||| |||    
T  31273113 tgacaaatccaaacgacacagttaggtaaatttcacttctctttcgcttaatttt-tcttaattcgtttaatttttagaagttcttctgattttgatttt 31273015  T
Q  200 ttaataaagtttagctacacaaaaa 224  Q
    ||||| ||| ||| || ||||||||    
T  31273014 ttaatgaagcttaactccacaaaaa 31272990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2063822 - 2064044
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttt-tcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| ||||  |||| |||||||| ||||| || ||| | || ||  ||||    
T  2063822 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcattttttttcccgcaaaaaccattcgttttacctttttccacaacagagga 2063921  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-ct 197  Q
    ||||| | | ||||||||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  || | | |||| ||| |||||||| |||||  |    
T  2063922 gtgacaaattcaaacgacaccgttagataaatttcacc--tctttcacttaatttttttttaattccttccatatttagaaggtcttctgattctgattt 2064019  T
Q  198 ttttaataaagtttagctacacaaa 222  Q
    ||||||| |||||||||||||||||    
T  2064020 ttttaatgaagtttagctacacaaa 2064044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 18676358 - 18676132
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| |||  || |||||||||||| ||||| |||||| | || |   |||    
T  18676358 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcattttttttctttgcataaaccattcgttttacccttttccacaaaagagg 18676259  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-- 195  Q
    |||||| | | ||||||||| |||||| |||| || |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| |||||      
T  18676258 agtgacaaattcaaacgacaccgttagataaagttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgatt 18676162  T
Q  196 -ctttttaataaagtttagctacacaaaaa 224  Q
      |||||||| || ||||||||||||||||    
T  18676161 tttttttaatgaaatttagctacacaaaaa 18676132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25222340 - 25222425
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttccccttt 85  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| ||||||    
T  25222340 ttaattagtcaatttagaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttt 25222425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7993649 - 7993873
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttt--tcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| || ||||||  ||| |||||||||||||||||||||||||||  ||| ||||  |||||||||||||| ||||| |||||| | || |   |||    
T  7993649 ttaatcagccaatttggaaagctatttcattgaaagaatcacaacaatctttttttttcttcgcataaaccattcgttttacccttttccacaatagagg 7993748  T
Q  99 agtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-- 195  Q
    |||||||  ||||||||||| |||||| ||||||| ||  |||||||||||| ||||  |||  ||  |||| |||||| |||||||||||| |||||      
T  7993749 agtgacaaatccaaacgacaccgttagataaatttcac--atctttcacttattttt--tttaattcctttcatgtttagaagttcttctgattctgatt 7993844  T
Q  196 ctttttaataaagtttagctacacaaaaa 224  Q
     |||||||| || |||| |||||||||||    
T  7993845 ttttttaatgaaatttaactacacaaaaa 7993873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 19367466 - 19367317
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| ||| |||| |||||||||| ||||| |||||| | || ||   |||    
T  19367466 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgaataaaccattcgttttacccttttccacaacagtgga 19367367  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaa 150  Q
    ||||| | | ||||||||| |||||| ||||||| |||  ||||||||||||    
T  19367366 gtgacaaattcaaacgacaccgttagataaatttcacc--tctttcacttaa 19367317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 13001655 - 13001861
Alignment:
Q  2 taattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagt 101  Q
    ||||||||||||||| ||| |||||||||| |||||||||||| ||| |||| ||||  | ||| || ||| |||||| ||||||| || ||  ||||||    
T  13001655 taattagtcaatttataaagctatttcattaaaagaatcacaataatcattttttttcagtatatacaattcgttttctcctttcccacaacaaaggagt 13001754  T
Q  102 gac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||| | |||||||||||  ||| ||||||||  || | ||||||||||| |  | |||| ||| |||||||||||| || ||||  ||| ||||| ||||    
T  13001755 gacaaatccaaacgacactgttcggtaaattgcacttctctttcacttattaattttttatttcgtttcgtgtttagaaattctattgattctgattttt 13001854  T
Q  201 taataaa 207  Q
    | |||||    
T  13001855 ttataaa 13001861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 38599593 - 38599663
Alignment:
Q  62 cataaaccatttgttttcccctttcctacgacgtaggagtgacattccaaacgacatcgttaggtaaattt 132  Q
    ||||||||||| |||||||||||||| |||||||| ||||| |||| ||||||||| ||||||||||||||    
T  38599593 cataaaccattcgttttcccctttcccacgacgtatgagtggcatttcaaacgacaccgttaggtaaattt 38599663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 42759802 - 42759567
Alignment:
Q  2 taattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    |||| |||||||||  |||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || |   ||| |    
T  42759802 taatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaatagagggg 42759703  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ct 197  Q
    |||| | | ||||||||| |||||| ||||  || | | |||||||||||||||| ||||  ||  |||| |||||| || ||||||||| |||||   |    
T  42759702 tgacaaattcaaacgacaccgttagataaa--ttccatctctttcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgatttt 42759606  T
Q  198 ttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||| || |||| ||||||||||| |||| ||||||    
T  42759605 ttttaatgaaatttaactacacaaaaaaaattacgtttt 42759567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 224
Target Start/End: Original strand, 45042430 - 45042632
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatc 119  Q
    ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |  || |||||| | || ||  ||||||||| | | ||||||||||     
T  45042430 ctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcg--ttacccttttccacaacagaggagtgacaaattcaaacgacatt 45042527  T
Q  120 gttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga---ctttttaataaagtttagcta 216  Q
    ||| | ||||||| |||||  |||||||||||||| ||||  ||  |||| | |||| ||||||||| || |||||    |||||||| |||||||||||    
T  45042528 gttggataaatttcaccta--tttcacttaatttt-ttttaattcctttcatatttagaagttcttccgattctgatttttttttaatgaagtttagcta 45042624  T
Q  217 cacaaaaa 224  Q
    ||||||||    
T  45042625 cacaaaaa 45042632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 154
Target Start/End: Complemental strand, 27302568 - 27302429
Alignment:
Q  8 gtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-at 106  Q
    |||||||| |||| |||| ||||| |||||||||||||||| |||| ||||||||||||||||||  ||||| |||||   |        ||||||| |     
T  27302568 gtcaatttgaaaagctatatcattaaaagaatcacaacaatcatttatttttcgcataaaccattcattttcaccttttgca--------gagtgacaaa 27302477  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||||||||| |||||||||||||| |||| | ||||||||||||||    
T  27302476 tccaaacgacaacgttaggtaaatttcacctttatttcacttaatttt 27302429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 34061903 - 34061818
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttccccttt 85  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||  ||||| ||||||    
T  34061903 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccatccgttttacccttt 34061818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6530676 - 6530754
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatt-tctttttcgcataaaccatttgtttt 78  Q
    ||||| ||||||||| ||||  |||||||||||||||||||||||||| ||| | || ||||||||||||||| |||||    
T  6530676 ttaatcagtcaatttgaaaaggtatttcattgaaagaatcacaacaatcattattttcttcgcataaaccattcgtttt 6530754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 13020440 - 13020518
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgtttt 78  Q
    ||||| |||||||||  ||| |||||||||| |||||||||||||||| |||| ||| ||||||||||||||| |||||    
T  13020440 ttaatcagtcaatttggaaagctatttcatttaaagaatcacaacaataatttttttcttcgcataaaccattcgtttt 13020518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 12269551 - 12269667
Alignment:
Q  109 caaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact---ttttaata 205  Q
    ||||||||| |||||| ||||||| ||||  ||||||||||||||| ||||  ||  |||| |||||| |||||||||||| ||||| |   |||||||     
T  12269551 caaacgacaccgttagataaatttcacct--ctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgattttcttttaatg 12269648  T
Q  206 aagtttagctacacaaaaa 224  Q
    || ||||||||||||||||    
T  12269649 aaatttagctacacaaaaa 12269667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 9029718 - 9029795
Alignment:
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttct 184  Q
    ||||||||||| |||| ||||||||| |||| ||||||||||| |  | |||| ||| ||||| |||||| |||||||    
T  9029718 tccaaacgacaccgtttggtaaatttcacctctctttcacttattaattttttatttcgtttcatgtttagaagttct 9029795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 36438398 - 36438179
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| ||||||||||||||||||    
T  36438398 ttaatcagtcaatttgaaaaaccatttcattgaaagaatcacaacaataatttatttttcacataaaccattcgttttcccttttcctacgacgtaggag 36438299  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  36438298 tgacattccaaatgacaccgttaggtaaatttcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattctgattttt 36438199  T
Q  201 taataaagtttagctacaca 220  Q
    |||| ||| |||||||||||    
T  36438198 taatgaagcttagctacaca 36438179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 26633380 - 26633603
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| |||||||| |||||||| |||    
T  26633380 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttctttttcgcataaaccattcatttttccctttcccacgacgtatgag 26633479  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||||||||||||||| ||||| |||||||| |||| ||||||||||||||||||||| ||||||||| |||||| | |||||||||| ||||| ||||    
T  26633480 tgacattccaaacgacaccgttaagtaaatttcacctctctttcacttaattttattttattttgtttcatgtttagacgttcttctgattctgattttt 26633579  T
Q  201 taataaagtttagctacacaaaaa 224  Q
    |||| ||| |||||||||||||||    
T  26633580 taatgaagcttagctacacaaaaa 26633603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 7366704 - 7366867
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    |||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  7366704 ttaatttgtcaatttgaaaaactattttattgaaagaatcacaacaattatttctttttcgcataaaccattcattttcccctttcctgcgacgtaggag 7366803  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgtttt 164  Q
    ||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||||||||    
T  7366804 tgacattccaaacgacaccgtaaggtaaatttcacctctctttcacttaattttattttgtttt 7366867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40738038 - 40737829
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||||||| |||||| |||||||||||||||||         |||||||||||||| ||| |||||||||||||||||||||||||||    
T  40738038 ttaatcagtcaatttaaaaagctattttattgaaagaatcacaac---------tttttcgcataaactattcgttttcccctttcctacgacgtaggag 40737948  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||||| |||| |||| |||||||||||||| |||| |||||||||| |||||||||| ||||||||| | ||||||||||||| ||| ||||||||||    
T  40737947 tgacatttcaaatgacaccgttaggtaaatttcacctctctttcactttattttattttattttgtttcat-tttaaaagttcttttgattctgactttt 40737849  T
Q  201 taataaagtttagctacaca 220  Q
    |||| ||| |||||||||||    
T  40737848 taatgaagcttagctacaca 40737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 28590171 - 28589969
Alignment:
Q  20 aactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacat-tccaaacgacat 118  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| || ||| ||||||||||  ||||||||||||    
T  28590171 aactatttcattaaaagaatcacaacaattatttctttttcgcgtaa-ccattcgttttcccctttcccacaacggaggagtgacaaatccaaacgacat 28590073  T
Q  119 cgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctaca 218  Q
     |||||||||| || |||| |||| |||||||||||  | | |||  |||| |||||| || ||||||||| ||||| |||||||| |||||||||||||    
T  28590072 tgttaggtaaaattcacctctcttccacttaatttt--tctatttcatttcatgtttagaaattcttctgattctgattttttaatgaagtttagctaca 28589975  T
Q  219 caaaaa 224  Q
    ||||||    
T  28589974 caaaaa 28589969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1366026 - 1366249
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||  |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || ||| |  |     
T  1366026 ttaatcagtcaatttgaaaagttatttcatagaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcccacaacggataat 1366125  T
Q  101 tgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||||| | |||| |||| ||||  ||||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||| |||||||| ||||| |||    
T  1366126 tgacatattcaaatgacaccgtt-tgtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttacaagctcttctgattctgatttt 1366224  T
Q  200 ttaataaagtttagctacacaaaaa 224  Q
    ||||||||| |||||||||||||||    
T  1366225 ttaataaagcttagctacacaaaaa 1366249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 32956792 - 32956940
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| || ||| | |||    
T  32956792 ttaatcagtcaatttataaagttatttcattgaaagaatcacaacaatgatttctttttcgcataaaccattcgttttcccctttcccacaacggatgag 32956891  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcactt 148  Q
    |||| | |||||||||||  ||||||||||||| |||||||||||||||    
T  32956892 tgacaaatccaaacgacactgttaggtaaatttcacctatctttcactt 32956940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 18895444 - 18895334
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  18895444 ttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaattatttccttttcgcataaacaattcgttttccccttacctacgacgtaggag 18895345  T
Q  101 tgacattccaa 111  Q
    |||||||||||    
T  18895344 tgacattccaa 18895334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30739140 - 30739365
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||  ||||||||| ||||||||||||| || ||||| ||||||||||||| ||| ||||||||||||   || |||  ||||    
T  30739140 ttaatcagtcaatttgaaaagttatttcattaaaagaatcacaacgatcatttccttttcgcataaacaattagttttcccctttttcacaacggcggag 30739239  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcac-ttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    |||| | |||||| |||| |||| ||||||||| |||| |||||||| || |||||||||| |||  |||| ||| || |||||||||||| ||||| ||    
T  30739240 tgacaaatccaaatgacaccgtttggtaaatttcacctctctttcacttttattttattttatttcatttcatgtatagaagttcttctgattctgattt 30739339  T
Q  199 tttaataaagtttagctacacaaaaa 224  Q
    |||||| |||||||||||||||||||    
T  30739340 tttaatgaagtttagctacacaaaaa 30739365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 40841260 - 40841066
Alignment:
Q  33 aaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcgttaggtaaatt 131  Q
    ||||||| |||||| | ||||||||||||||||||||||| ||||||||||||||||| ||| || |||||| | ||||||||| | | ||||| |||||    
T  40841260 aaagaattacaacactcatttctttttcgcataaaccattcgttttcccctttcctacaacggagaagtgacaaatccaaacgagaccattaggaaaatt 40841161  T
Q  132 ttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaataaagtttagctacacaaaaa 224  Q
    | |||||||||||| ||| |||| |||| ||| ||||| |||||| |||||||||| | |||||   |||||||||||| |||||||||||||||    
T  40841160 tcacctatctttcaattattttttttttatttcgtttcatgtttagaagttcttctaattctgattttttttaataaagcttagctacacaaaaa 40841066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 42312029 - 42312262
Alignment:
Q  4 attagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtga 103  Q
    |||||||||||| |||| |||||||||| |||||||||||||| | |||| |||||||| ||||  ||| |||||||||||||| || ||| | ||| ||    
T  42312029 attagtcaatttgaaaagctatttcattaaaagaatcacaacagtcatttatttttcgcttaaataattcgttttcccctttcc-acaacggatgagcga 42312127  T
Q  104 cat-tccaaacgacatcgttaggtaaattttacctatctttcacttaa-ttttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    ||  || |||||||| ||||| |||||||| |||| |||||||||||| |||| |||| ||| ||||| |||||| |||||||||||| ||| | |||||    
T  42312128 caaatctaaacgacaccgttaagtaaatttcacctctctttcacttaattttttttttatttcgtttcatgtttagaagttcttctgattctaatttttt 42312227  T
Q  202 aataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||| ||| ||| ||||||| ||| ||||| |||||    
T  42312228 aatgaagcttaactacacacaaaaaattgtgtttt 42312262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 24 - 224
Target Start/End: Original strand, 25610106 - 25610306
Alignment:
Q  24 atttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcgtt 122  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||||| || | | |   ||||| | ||||||||||| ||||    
T  25610106 atttcattgaaagaatcacaacaatcatttctttttcacataaaccaatagttttcccctttcccacaatggataggtgacaaatccaaacgacaccgtt 25610205  T
Q  123 aggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctacacaaa 222  Q
    | ||||||| || || |||||||||||||||| || | ||| ||||| |||||  ||| |||||||| ||||| |||||||||||| ||||||||| |||    
T  25610206 a-gtaaattctatctctctttcacttaatttttttgtatttcgtttcatgtttggaagctcttctgattctgattttttaataaagcttagctacaaaaa 25610304  T
Q  223 aa 224  Q
    ||    
T  25610305 aa 25610306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41908195 - 41908416
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||  |||| || |||||||||||||||||||||||| ||||||||||||||||||| | | || ||| |||||   || ||| |||||    
T  41908195 ttaatcagtcaattagaaaagctgtttcattgaaagaatcacaacaatcatttctttttcgcataaac-actcgtattctcctttttcactacggaggag 41908293  T
Q  101 tgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-ctt 198  Q
    |||||  ||||||||| |||||||| ||||||| |||| | |||||||||||||| |||| ||||||||| |||||| ||||| |||||| |||||  ||    
T  41908294 tgacagatccaaacgatatcgttagataaatttcacctctttttcacttaatttt-ttttattttgtttcatgtttagaagtttttctgattctgatttt 41908392  T
Q  199 tttaataaagtttagctacacaaa 222  Q
    |||||| ||| |||| ||||||||    
T  41908393 tttaatgaagcttagttacacaaa 41908416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 773925 - 773707
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttt--cgcataaaccatttgttttcccctttcctacgacgtaggagtgac 104  Q
    ||||||||| |||| |||||| |||||||||||||||||||| |||| |||||   |||||||||||| ||||| |||||||| || ||| |||||| ||    
T  773925 agtcaatttgaaaagctattttattgaaagaatcacaacaatcattttttttttgtgcataaaccattcgtttt-ccctttccaacaacggaggagtcac 773827  T
Q  105 -attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaa 203  Q
     | | ||||||||  |||||||||||||| || | |||||||||||||||| |||| ||| ||||| |||||| |||||||||||| | ||| |||||||    
T  773826 aaattcaaacgacgccgttaggtaaatttcacatctctttcacttaatttt-ttttatttcgtttcatgtttagaagttcttctgattttgattttttaa 773728  T
Q  204 taaagtttagctacacaaaaa 224  Q
    | ||| ||| ||||| |||||    
T  773727 tgaagcttaactacataaaaa 773707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 3799786 - 3799593
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacattccaaacgacatcgt 121  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||     |||| || | | ||||| |  | ||||||||||| |||    
T  3799786 ctatttcattgaaagaatcacaacaatcattt-ttttccgcataaaccattcgttttagaaattcccacaatggaggagcgcaaatccaaacgacaccgt 3799688  T
Q  122 taggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctaca 218  Q
    ||||||||||| |||| |||||||||||||||  |||| ||| ||||| |||||| |||||||||||| ||||| |||| ||| |||||||||||||    
T  3799687 taggtaaatttcacctctctttcacttaattt--ttttatttcgtttcatgtttagaagttcttctgattctgatttttaaatgaagtttagctaca 3799593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 12251335 - 12251135
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  12251335 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 12251236  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    ||||| | |||||||| || |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| ||||| ||    
T  12251235 gtgacaaatccaaacgtcaccgttagataaatttcacc--tctttcacttaatttttttttaattcctttcatgtttagaagttcttctgattctgattt 12251138  T
Q  199 ttt 201  Q
    |||    
T  12251137 ttt 12251135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 41852341 - 41852127
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-a 105  Q
    |||||||||||| |  |||||||||||||||||| ||||| | |||||||||| |||||||  |||  ||||||||||| | || ||| ||||||||| |    
T  41852341 agtcaatttaaagagttatttcattgaaagaatcgcaacactcatttcttttttgcataaataattcattttccccttttccacaacggaggagtgacaa 41852242  T
Q  106 ttccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaata 205  Q
     | ||||||||| |||||| ||||||| || | |||||||||||||||  |||| ||| ||||   |||||||||||||||||| ||||| || |||||     
T  41852241 attcaaacgacaccgttagataaatttcacatctctttcacttaattt--ttttatttcgtttgacgtttaaaagttcttctgattctgatttcttaatg 41852144  T
Q  206 aagtttagctacacaaa 222  Q
    ||  |||||||||||||    
T  41852143 aaacttagctacacaaa 41852127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 33910081 - 33910306
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  33910081 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 33910180  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--- 195  Q
     | || | ||||||||||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| ||||| |||| | |||||       
T  33910181 attacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttattcttattctgattt 33910277  T
Q  196 ctttttaataaagtttagctacacaaaaa 224  Q
     |||||||| |||||||||||||||||||    
T  33910278 ttttttaatgaagtttagctacacaaaaa 33910306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 33419158 - 33418926
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac- 104  Q
    ||||||||| ||||  |||||||||||||||||||||| ||| |||| ||| ||||||||||||||| ||||| || ||| |||| ||  |||||||||     
T  33419158 agtcaatttgaaaagttatttcattgaaagaatcacaataatcatttttttcttcgcataaaccattcgttttaccattttctacaacagaggagtgaca 33419059  T
Q  105 attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga---cttttt 201  Q
    | ||||||||||| |||||| ||||||| |||  ||||||||||| |||| ||||  ||   ||| |||||| || ||||||||| |||||    |||||    
T  33419058 aatccaaacgacaccgttagataaatttcacc--tctttcacttattttttttttaattccattcatgtttagaacttcttctgattctgattttttttt 33418961  T
Q  202 aataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||||| |||| ||||||||||| |||| ||||||    
T  33418960 aataaaatttaactacacaaaaaaaattacgtttt 33418926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 46221750 - 46221550
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| || ||| | || ||  | ||    
T  46221750 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttattcgcataaaccattcgttttaccattttccacaacagaaga 46221651  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
     |||| | |||||| || |||||||| |||||||||||  |||||||||||||||| ||||  ||| |||| |||||| |||||||||| | ||||| ||    
T  46221650 atgacaaatccaaatgatatcgttagataaattttacc--tctttcacttaatttttttttaatttctttcatgtttagaagttcttctaattctgattt 46221553  T
Q  199 ttt 201  Q
    |||    
T  46221552 ttt 46221550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 36796419 - 36796219
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| |||||||||  |||| |||||||||||||||||||||||||| |||| |||  ||||||||||||||| ||||| |||||| | || ||  |||    
T  36796419 ttaatcagtcaatttggaaaattatttcattgaaagaatcacaacaatcattttttttcttcgcataaaccattcgttttacccttttccacaacagagg 36796320  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    |||||| | || |||||||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || ||||||||| ||||| |    
T  36796319 agtgacaaatcaaaacgacaccgttagataaatttcacc--tctttcacttaatttttttttaattcatttc-tgtttagaacttcttctgattctgatt 36796223  T
Q  198 tttt 201  Q
    ||||    
T  36796222 tttt 36796219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9479144 - 9479208
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcata 65  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9479144 ttaatcagtcaatttaaaaaactatttcgttgaaagaatcacaacaattatttctttttcgcata 9479208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 44876202 - 44876047
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||| ||| |||||||||| |||||||||||||||| |||| |||| ||||||||||||| ||||| |||||||| || | | |||||    
T  44876202 ttaatcagtcaatttagaaagctatttcattaaaagaatcacaacaatcattt-ttttccgcataaaccattcgtttt-ccctttcc-acaatgaaggag 44876106  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttatttt 159  Q
    |||| | ||||||||||| | |||||||||||| | || |||||||||||||||| ||||    
T  44876105 tgacaaatccaaacgaca-ctttaggtaaatttcatctctctttcacttaattttttttt 44876047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 6380110 - 6379907
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattat-ttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatc 119  Q
    ||||||||||||||||||||||||||| || || || ||||||||||||||| ||||| |||||| | || ||  ||||||||| | ||||||||||||     
T  6380110 ctatttcattgaaagaatcacaacaatcatatttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgacatt 6380011  T
Q  120 gttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaataaagtttagctac 217  Q
    ||| | ||||||| |||  |||||||||||||||| ||||  ||  |||| | |||| ||||||||  || |||||   |||||||| ||||||| ||||    
T  6380010 gttggataaatttcacc--tctttcacttaatttt-ttttaattcctttcatatttagaagttctttcgattctgattttttttaatgaagtttaactac 6379914  T
Q  218 acaaaaa 224  Q
    |||||||    
T  6379913 acaaaaa 6379907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 42161146 - 42160970
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcg 120  Q
    |||||||||||||||||||||| |||  |||| || ||||||||||||||| ||||| || ||| | || ||  ||||||||| | ||||||||||| ||    
T  42161146 ctatttcattgaaagaatcacagcaacaattt-ttcttcgcataaaccattcgttttacctttttccacaacagaggagtgacaaatccaaacgacaccg 42161048  T
Q  121 ttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    |||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| ||||| |||||| ||||| |||||    
T  42161047 ttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttattctgattctgatttttt 42160970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7636373 - 7636146
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| ||||||||| |||| ||||||||||||||||||| ||||||| |||| |||  ||| ||||| ||||| ||||| |||||| | || ||  | |    
T  7636373 ttaatcagtcaatttgaaaagctatttcattgaaagaatcgcaacaatcattttttttcttcccataagccattcgttttacccttttccacaacagaag 7636274  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaa-ttttattttgttttgtttcgtgtttaaaagttcttctgaatctgac 196  Q
    |||||| | | ||||||| | |||||| ||||||| |||  | |||||||||| |||| ||||  ||  |||| |||||| ||||| |||||| |||||     
T  7636273 agtgacaaattcaaacgataccgttagataaatttcacc--tttttcacttaattttttttttaattcctttcatgtttagaagttgttctgattctgat 7636176  T
Q  197 ttttt--aataaagtttagctacacaaaaa 224  Q
    |||||  ||| |||||||||||||||||||    
T  7636175 ttttttcaatgaagtttagctacacaaaaa 7636146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 18015621 - 18015403
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt---ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac- 104  Q
    |||||||  ||| |||||||||||||||||||||||||||||||| |||   ||||||| ||||||| ||||| ||||||   || ||  |  ||||||     
T  18015621 tcaatttggaaagctatttcattgaaagaatcacaacaattatttttttttcttcgcattaaccattcgttttacccttttacacaacagaaaagtgaca 18015522  T
Q  105 attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--cttttta 202  Q
    | | ||||||||| |||| | ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||| | |||||   ||||||    
T  18015521 aattcaaacgacaccgtttgataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctaattctgatttttttta 18015425  T
Q  203 ataaagtttagctacacaaaaa 224  Q
    || || ||||||||||||||||    
T  18015424 atgaaatttagctacacaaaaa 18015403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 11672603 - 11672756
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  |||  ||||||| |||||||||||||||||| |||| ||| |||||||||| |||| ||||| | |||| | || ||  ||||    
T  11672603 ttaatcagtcaatttggaaagttatttcaatgaaagaatcacaacaatcatttttttcttcgcataaatcattcgttttactcttttccacaacagagga 11672702  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||| | || ||||||||||||| | ||||||| |||  ||||||||||||||||    
T  11672703 gtgacaaatctaaacgacatcgtttgataaatttcacc--tctttcacttaatttt 11672756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 7369967 - 7370044
Alignment:
Q  160 gttttgtttcgtgtttaaaagttcttctgaatctga-ctttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||||||||||| |||||||||| |||||| |||||  |||||||| ||| |||| ||||||| ||||||||||||||    
T  7369967 gttttgtttcgtatttaaaagtttttctgattctgatttttttaatgaagcttagttacacaagaagaattgcgtttt 7370044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26282589 - 26282532
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttt 58  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  26282589 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttt 26282532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40001743 - 40001696
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaat 48  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||    
T  40001743 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaat 40001696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 4099993 - 4100063
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgtttt 78  Q
    ||||||| |||| |||||||||||||||||| |||||||| |||| ||| |||||| |||||||| |||||    
T  4099993 tcaatttgaaaagctatttcattgaaagaattacaacaatcatttttttcttcgcaaaaaccattcgtttt 4100063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 44894068 - 44893991
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttccccttt 85  Q
    |||||||  ||| |||||| |||||||||||||||||||| |||| ||| ||| ||||||||||| ||||| ||||||    
T  44894068 tcaatttggaaagctattttattgaaagaatcacaacaatcatttttttcttcacataaaccattcgttttacccttt 44893991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 8358341 - 8358294
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaat 48  Q
    ||||| ||||||||||||||  ||| ||||||||||||||||||||||    
T  8358341 ttaatcagtcaatttaaaaagttatctcattgaaagaatcacaacaat 8358294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 21145482 - 21145557
Alignment:
Q  109 caaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttct 187  Q
    ||||||||| |||||||||||||| ||||  ||||||||||||||  |||| ||| ||||| ||| |||||||||||||    
T  21145482 caaacgaca-cgttaggtaaatttcacctccctttcacttaattt--ttttatttcgtttcatgtataaaagttcttct 21145557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 224
Target Start/End: Complemental strand, 40001694 - 40001535
Alignment:
Q  65 aaaccatttgttttcccctttcctacgacgtaggagtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttt 163  Q
    |||||||| ||||| |||||||| || ||| |  |||||||  | ||||||||  |||||| ||||||  |||| |||||||||||||||| || | |||    
T  40001694 aaaccattcgtttttccctttcccacaacggataagtgacaaattcaaacgacgccgttag-taaattccacctctctttcacttaatttttttgtattt 40001596  T
Q  164 tgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctacacaaaaa 224  Q
     ||||| |||||| ||| |||||| | |||   ||| |||||||| ||| |||||||||||    
T  40001595 cgtttcatgtttagaagctcttctaattctatttttctaataaagcttaactacacaaaaa 40001535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 36515202 - 36514966
Alignment:
Q  2 taattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  36515202 taatcagttaatttaaaaaactatttcattgaaagaatcacaacaattatttttttcttcgcataaatcatttgttttcccatttcctacgacgtaggag 36515103  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||||||||||||||| |||||| ||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  36515102 tgacattccaaacgacaccgttagataaatttcagctctctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgattctgattttt 36515003  T
Q  201 taat-aaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||| |||  | |||| || ||| |||||||||||||    
T  36515002 taatgaaaactgagctgcaaaaagagaattgcgtttt 36514966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 3628793 - 3628600
Alignment:
Q  2 taattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagt 101  Q
    |||| ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  3628793 taatcagtcaatttgaaaagttatttcattgaaagaatcacaacaattatttctttttcgcataaaccattcgtttttccgtttcctacgacgtaggagt 3628694  T
Q  102 gacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga 195  Q
    ||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||||    
T  3628693 gacattccaaacgacacagttaggtaaatttcacctctctttcacttaattttattttgttttctttcatgtttaaaagttcttttgattctga 3628600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 42076133 - 42076361
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttt--cgcataaaccatttgttttcccctttcctacgacgtaggagtgacat 106  Q
    ||||||| |||| ||||  |||||||||||||| || ||| |||  |||||  ||||||||| ||| |||||||||||| |||||| |||||||||||||    
T  42076133 tcaatttgaaaagctataacattgaaagaatcataataataattatttttttccgcataaactattcgttttccccttttctacga-gtaggagtgacat 42076231  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataa 206  Q
    |||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |    
T  42076232 tccaaatgacaccgttaggtaaatttcacctatctttcacttaattttattttgttttgtttcatgtttaaaagttcttttgattctgattttttaatga 42076331  T
Q  207 agtttagctacacaaaaagaattgcgtttt 236  Q
    || ||| |||||||||||||||||||||||    
T  42076332 agcttatctacacaaaaagaattgcgtttt 42076361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12531576 - 12531812
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |  |     
T  12531576 ttaatcagtcaatttaaaaatctatttcattgaaagaatcacaacaatcatttctttttcacataaaccatttgttttcccctttcccacaacggataaa 12531675  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | | ||||||||  ||||| ||||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||| |||||| | ||||| |||    
T  12531676 tgacaaattcaaacgacgccgtta-gtaaattatacctctctttcacttaatttttttatatttcgtttcatgtttagaagctcttcttattctgatttt 12531774  T
Q  200 ttaataaagtttagctacaca-aaaagaattgcgtttt 236  Q
    ||||||||| ||||||||||| |||| ||||| |||||    
T  12531775 ttaataaagcttagctacacacaaaaaaattgtgtttt 12531812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 32098225 - 32098036
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| || ||  |||||    
T  32098225 ttaatcagtcaatttggaaaactatttcattgaaagaatcacaacaattatttcttttttgcataaaccattcgttttccccattcccacaacagaggag 32098126  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctga 189  Q
    |||| | ||||||||||| ||||| |||||||| || | |||||||||||||||| |||| ||| ||||| |||||| |||||| |||||    
T  32098125 tgacgaatccaaacgacaccgttacgtaaatttcacttctctttcacttaatttttttttatttcgtttcatgtttagaagttcatctga 32098036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 34523998 - 34523767
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||||||||||  |||||||||| |||||||||||||| || ||| |  ||    
T  34523998 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttctttttcatataaaccattcgttttcccctttcccacaacggataag 34523899  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | ||||||||||| |||||  |||||| ||||  |||||||||||||||| || | ||| ||||| |||||| ||| |||||||| ||||| |||    
T  34523898 tgacaaatccaaacgacaccgtta-ttaaattctacc--tctttcacttaatttttttgtatttcgtttcatgtttagaagctcttctgattctga-ttt 34523803  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  34523802 ttaataaagcttagctacacaaaaa-aattgcgtttt 34523767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 35874998 - 35875139
Alignment:
Q  83 tttcctacgacgtaggagtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagtt 182  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| |  |||| || |||||||||||||||||| ||||||||| ||||||||||||    
T  35874998 tttcctacgacgtaggagtgacatttcaaatgacatcgttaggtaaactccacctctcgttcacttaattttattttattttgtttcatgtttaaaagtt 35875097  T
Q  183 cttctgaatctgactttttaataaagtttagctacacaaaaa 224  Q
    ||||||| ||||| |||||||| ||| |||| ||||||||||    
T  35875098 cttctgattctgattttttaatgaagcttagttacacaaaaa 35875139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 39697985 - 39697755
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||||| || ||| |  ||    
T  39697985 ttaattagtcaatttgaaaagctatttcattgaaagaatcacaacaattatttcttttttacataaaccattcgttttcgcctttcccacaacggataag 39697886  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||| | |||||| ||||  |||| ||||||| ||||| ||||||||||| |||| || | ||| ||||| |||||| ||  |||||||| ||||| |||    
T  39697885 tgacaaatccaaatgacactgtta-gtaaattctacctctctttcacttattttttttgtatttcgtttcatgtttagaaactcttctgattctgatttt 39697787  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||     |||||||||||||| |||||| ||||    
T  39697786 ttaata-----tagctacacaaaaaaaattgcatttt 39697755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 181
Target Start/End: Original strand, 29372402 - 29372554
Alignment:
Q  29 attgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacattccaaacgacatcgttaggtaa 128  Q
    ||||||||||| |||||||| |||| ||||||||||||||||||  ||||||||||| | |||| | |||||||||| ||||||||||| | ||||||||    
T  29372402 attgaaagaatgacaacaatcatttatttttcgcataaaccattcattttcccctttgccacgatgaaggagtgacaatccaaacgacaccattaggtaa 29372501  T
Q  129 attttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagt 181  Q
    |||| || | | ||||||||||||||||||| ||| ||||| |||||| ||||    
T  29372502 atttcacatttgtttcacttaattttattttatttcgtttcatgtttagaagt 29372554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 43926370 - 43926148
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| | ||| |||||| | || |   ||||    
T  43926370 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgctttacccttttccacaatagagga 43926271  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    ||||| | ||||||||||| |||||  ||||||| |||  |||||| ||||||||| ||||  ||  |||| |||||| || ||||||||| ||||| ||    
T  43926270 gtgacaaatccaaacgacaccgttacataaatttcacc--tctttctcttaatttt-ttttaattcctttcatgtttagaacttcttctgattctgattt 43926174  T
Q  199 tttaataaagtttagctacacaaaaa 224  Q
    |||| | || ||||||||||||||||    
T  43926173 tttagtgaaatttagctacacaaaaa 43926148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 1004075 - 1004272
Alignment:
Q  1 ttaattagtcaattt-aaaaaactatttcattgaaagaatcacaacaattatttctttt--tcgcataaaccatttgttttcccctttcctacgacgtag 97  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||| |||| ||||  |||||||||||||| ||||| |||||| | || ||  ||    
T  1004075 ttaatcagtcaatttgaaaaaattatttcattgaaagaatcacaacaatcattttttttcatcgcataaaccattcgttttacccttttccacaacagag 1004174  T
Q  98 gagtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgact 197  Q
    ||||||||   ||||||||| |||||| ||||||| |||  |||||||||||||||  ||||  ||  |||| ||||||||| ||||||||| ||||| |    
T  1004175 gagtgaca--acaaacgacaccgttagataaatttcacc--tctttcacttaattt--ttttaattcctttcatgtttaaaacttcttctgattctgatt 1004268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 13585316 - 13585515
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  13585316 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 13585415  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    ||||| | ||||||||||  |||||| ||||||| |||  | |||||||||||||| ||||  ||  |||| |||||| |||||||||||| ||||| ||    
T  13585416 gtgacaagtccaaacgacgccgttagataaatttcacc--tttttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgattt 13585512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3471617 - 3471840
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| ||| ||||||| |||||||  |||| |||||| | || ||  ||||    
T  3471617 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcatgaaccattcattttacccttttccacaacagagga 3471716  T
Q  100 gtgaca-ttccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--c 196  Q
    |||| |  ||||||||||| |||||| ||||||| |||||  |||||||||||||  ||||  ||  |||  |||||| |||||||| ||| |||||       
T  3471717 gtgatagatccaaacgacaccgttagataaatttcaccta--tttcacttaattt--ttttaattcctttaatgtttagaagttcttatgattctgattt 3471812  T
Q  197 tttttaataaagtttagctacacaaaaa 224  Q
    |||||||| |||||||||||||||||||    
T  3471813 tttttaatgaagtttagctacacaaaaa 3471840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 5869369 - 5869289
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttccc 81  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  5869369 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcattttttttccgcataaaccatttgttttccc 5869289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 18420656 - 18420456
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| || |||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| || |||   || ||  ||||    
T  18420656 ttaatcagtcaatttgaaaagctgtttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttaccttttttcacaacagagga 18420557  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    ||||| | ||||||||||| |||||| ||||||| |||  | |||||||||||||| ||||  ||  |||| |||||| ||||| |||||| ||||| ||    
T  18420556 gtgacaaatccaaacgacaccgttagataaatttcacc--tttttcacttaatttttttttaattcctttcatgtttagaagttattctgattctgattt 18420459  T
Q  199 ttt 201  Q
    |||    
T  18420458 ttt 18420456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 43968109 - 43967918
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-at 106  Q
    ||||||| ||||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| | |||| | || ||  ||||||||| |     
T  43968109 tcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttactcttttccacaacagaggagtgacaaa 43968010  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    ||||||||||||| |||| ||||||| |||  |||||||||||||||| ||||  ||  |||| | |||| |||||||||||| ||||| |||||    
T  43968009 tccaaacgacatccttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatatttagaagttcttctgattctgatttttt 43967918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 23567321 - 23567168
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| || ||||| || ||| |  |     
T  23567321 ttaatcagtcaatttgaaatactatttcattgaaagtatcacaacaatgatttctttttcacataaaccattcgtttttccttttcccacaacggataaa 23567222  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    |||| | ||||||||||  ||||| ||||||| ||||  ||||||||||||||||    
T  23567221 tgacaaatccaaacgacgccgtta-gtaaattctaccactctttcacttaatttt 23567168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 149
Target Start/End: Original strand, 42777763 - 42777911
Alignment:
Q  2 taattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagt 101  Q
    ||||||||||||||| ||| |||||| ||| |||||||||||||||| |||| |||| |||||| |||||| |||||| | ||||| || ||| ||||||    
T  42777763 taattagtcaatttagaaagctatttaattaaaagaatcacaacaatcattttttttccgcatataccattcgttttctcatttcccacaacggaggagt 42777862  T
Q  102 gac-attccaaacgacatcgttaggtaaattttacctatctttcactta 149  Q
    ||| |  |||||| ||| ||||  |||||||| |||| |||||||||||    
T  42777863 gacaaaaccaaaccacaccgttcagtaaatttcacctctctttcactta 42777911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 18112133 - 18112282
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| |||||||||  |||||||||| |||||||||||||||||||| |||| |||  ||||||||||||||| ||||| |||||| | || |   |||    
T  18112133 ttaatcagtcaatttggaaaactattttattgaaagaatcacaacaatcattttttttcttcgcataaaccattcgttttacccttttccacaatagagg 18112232  T
Q  99 agtgac-attccaaacgacatcgttaggtaaattttacctatctttcactta 149  Q
    |||||| | ||||||||||| |||||| ||||||| |||  |||||||||||    
T  18112233 agtgacaaatccaaacgacaccgttagataaatttaacc--tctttcactta 18112282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 27074591 - 27074669
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgtttt 78  Q
    ||||| |||||||||||||  |||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||    
T  27074591 ttaatcagtcaatttaaaagtctatttcattgaaaaaatcacaacaatcatttttttcttcgcataaaccatttgtttt 27074669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 44665071 - 44664933
Alignment:
Q  23 tatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatcg 120  Q
    |||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||||||| | ||||||||| | |     
T  44665071 tatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatccaaacgatacca 44664972  T
Q  121 ttaggtaaattttacctatctttcacttaattttattttgt 161  Q
    |||| ||||||| |||  | |||||||||||||| ||||||    
T  44664971 ttagataaatttcacc--tttttcacttaatttttttttgt 44664933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30915335 - 30915258
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaa-gaatcacaacaattatttctttttcgcataaaccatttgttt 77  Q
    ||||| ||||||||| |||| |||||||||| ||| ||||||||||||| ||||||||||||||||||  ||||||||    
T  30915335 ttaatcagtcaatttgaaaagctatttcattaaaaagaatcacaacaatcatttctttttcgcataaataatttgttt 30915258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 33452916 - 33452999
Alignment:
Q  141 tttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctacacaaaaa 224  Q
    |||||||||||||| |||| ||| ||||| |||||| |||||||||| | | ||| |||||||| ||||||||||||| |||||    
T  33452916 tttcacttaatttttttttatttcgtttcatgtttagaagttcttctaattatgattttttaatgaagtttagctacaaaaaaa 33452999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 33452841 - 33452894
Alignment:
Q  33 aaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcc 87  Q
    |||||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  33452841 aaagaatcacaacaatcatttctttttcgcataaatcatttg-tttcccctttcc 33452894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 7858102 - 7858240
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  |||  || |||||| |||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  7858102 ttaatcagtcaatttggaaagttaattcatttaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 7858201  T
Q  100 gtg-acattccaaacgacatcgttaggtaaattttacct 137  Q
    ||| | | |||||| |||| |||||| ||||||| ||||    
T  7858202 gtgaaaaatccaaatgacaccgttagataaatttcacct 7858240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 35874950 - 35875000
Alignment:
Q  8 gtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttt 58  Q
    |||||||| |||||||||||| | ||||||| |||||||||||||||||||    
T  35874950 gtcaatttgaaaaactatttcttagaaagaaccacaacaattatttctttt 35875000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 42951816 - 42951727
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaat----cacaacaattatttcttt-ttcgcataaaccatttgttttccccttt 85  Q
    ||||| ||||||||| ||||  ||||| |||||||||||    ||||||||| |||| ||| ||||||||||||||| ||||| ||||||    
T  42951816 ttaatcagtcaatttgaaaagttattttattgaaagaatcacacacaacaatcatttttttcttcgcataaaccattcgttttacccttt 42951727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 35654019 - 35653808
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacattc 108  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||     
T  35654019 tcaatttgaaaagctatttcattgaaagaatcacaacaattatttctttttcgcataaactattcgtttttccctttcctacgacgtaggagtgacattt 35653920  T
Q  109 caaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaag 208  Q
    |||| |||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| |||    
T  35653919 caaatgacaccgttagataaatttcacctctctttcacttaattttattttgttttgtttcatgtttaaaagttcttctgattcggactttttaatgaag 35653820  T
Q  209 tttagctacaca 220  Q
     ||| |||||||    
T  35653819 cttaactacaca 35653808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21791594 - 21791377
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| | |||    
T  21791594 ttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttctttttcgcataaaccatttg-tttcccctttcccacgacgaatgag 21791496  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttt 200  Q
    ||||| |||||||||||| ||||||||||||| |||| ||||| | || |||||||||| |||  |||| |||||| |||||||||||| ||| | ||||    
T  21791495 tgacaatccaaacgacattgttaggtaaatttcacctctctttaaatttattttattttatttcatttcatgtttagaagttcttctgattct-aatttt 21791397  T
Q  201 taataaagtttagctacaca 220  Q
    ||||||||||||||| ||||    
T  21791396 taataaagtttagctgcaca 21791377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 22423709 - 22423886
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttt--cgcataaaccatttgttttcccctttcctacgacgtaggagtgacat 106  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||| |||||  | |||||| |||| ||||| || |||| |||||| ||||||||||||    
T  22423709 tcaatttgaaaaactattttattgaaagaatcaaaacaattatttattttttccacataaatcattcgtttttccatttcatacgacataggagtgacat 22423808  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttct 184  Q
    ||||||||||| |||||| ||||||| |||| | ||||||||||||||||||||||||||||| ||||||||||||||    
T  22423809 tccaaacgacaccgttagataaatttcacctctgtttcacttaattttattttgttttgtttcatgtttaaaagttct 22423886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 10575570 - 10575382
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||| |||  ||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||    
T  10575570 ttaatcagtcaatttagaaagttatttcattgaaataatcacaacaatcatttctttttcgcataaaccattcgttttcccctttcccacgacggaggag 10575471  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctga 189  Q
    ||||| ||| || |||| ||| |||||||||| | || | |||||||| |||||||||| ||| ||||| |||||| ||||||||||||    
T  10575470 tgacaatccgaatgacaccgtcaggtaaatttcatctctttttcactttattttattttatttcgtttcatgtttagaagttcttctga 10575382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 224
Target Start/End: Original strand, 24449198 - 24449339
Alignment:
Q  83 tttcctacgacgtaggagtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagtt 182  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||| |  |||| || |||||||||||||||||| ||||||||| ||||||||||||    
T  24449198 tttcctacgacgtaggagtgacatttcaaatgacatcgttaggtaaactccacctctcgttcacttaattttattttattttgtttcatgtttaaaagtt 24449297  T
Q  183 cttctgaatctgactttttaataaagtttagctacacaaaaa 224  Q
    ||||||| ||||| |||||||| ||| |||| ||||||||||    
T  24449298 cttctgattctgattttttaatgaagcttagttacacaaaaa 24449339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 34982241 - 34982476
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||  |||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| || ||  |  |     
T  34982241 ttaatcagtcaattggaaaaactatttcgttgaaagaatcacaacaattatttctttttcatataaatcatttgttttcccctttcccacaacagataaa 34982340  T
Q  101 tgac--attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    ||||  ||  ||||||||  ||||| ||||||| ||||| ||||| |||||||||| || | ||| ||||  |||||| || ||||||||| ||||| ||    
T  34982341 tgacaaatctcaaacgaccccgtta-gtaaattctacctctcttttacttaatttttttgtatttcgttttatgtttagaatttcttctgattctga-tt 34982438  T
Q  199 tttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    |||||||||| ||| ||||||||||| |||||| ||||    
T  34982439 tttaataaagcttaactacacaaaaaaaattgcatttt 34982476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 23426213 - 23425977
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  23426213 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 23426114  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--c 196  Q
    ||||| | ||||||| ||  |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| ||| |       
T  23426113 gtgacaaatccaaacaacgccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctaattt 23426017  T
Q  197 tttttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||||||| |||||||||||||||| |||| ||||||    
T  23426016 tttttaataaaatttagctacacaaaaaaaattacgtttt 23425977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 5545353 - 5545534
Alignment:
Q  8 gtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-at 106  Q
    ||||||||  ||| |||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||| |||  || ||| ||||||||| |     
T  5545353 gtcaatttggaaagctatttcattaaaagaatcacaacaatcatttatttttcgcataaaccattcgttttcccccttctcacaacggaggagtgacaaa 5545452  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaa-ttttattttgttttgtttcgtgtttaaaagttcttctga 189  Q
    | ||||||||| |||||||||||||| ||   |||||||||||| |||| |||| ||| ||||| |||||| ||||||||||||    
T  5545453 ttcaaacgacaccgttaggtaaatttcac--gtctttcacttaattttttttttatttcgtttcatgtttagaagttcttctga 5545534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32130837 - 32130612
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  32130837 ttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 32130738  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--- 195  Q
    ||||| | | |||||||||   |||| |||||||  | | |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| |||||       
T  32130737 gtgacaaattcaaacgacacaattagataaattt--catctctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgattt 32130641  T
Q  196 ctttttaataaagtttagctacacaaaaa 224  Q
     ||||||||||| ||||||||||||||||    
T  32130640 ttttttaataaaatttagctacacaaaaa 32130612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 41038267 - 41038453
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  41038267 ttaatcagtcaatttggaaaactatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 41038366  T
Q  100 gtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctga 189  Q
    ||||||  ||||||||||| |||||| ||||||| ||||  |||||||||||||||  |||  ||  |||| |||||| ||||||||||||    
T  41038367 gtgacaaatccaaacgacaccgttagataaatttcacct--ctttcacttaatttt--tttaattcctttcatgtttagaagttcttctga 41038453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 53011729 - 53011956
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| |||||||||| |||||||||||||||| |||| ||| |||||||||||||||  |||| |||||| | || ||  ||||    
T  53011729 ttaatcagtcaatttggaaagctatttcattaaaagaatcacaacaatcatttttttcttcgcataaaccattcattttacccttttccacaacagagga 53011828  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgt--tttgtttcgtgtttaaaagttcttctgaatctga- 195  Q
    ||||| | ||||||||||| |||||| ||||||| |||  |||||||||||||||| |||| |  ||  |||| |||||| |||||||||||| |||||     
T  53011829 gtgacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaatttttttttttaattcctttcatgtttagaagttcttctgattctgat 53011926  T
Q  196 -ctttttaataaagtttagctacacaaaaa 224  Q
      |||||||| || ||||||||||||||||    
T  53011927 tttttttaatgaaatttagctacacaaaaa 53011956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 45172692 - 45172539
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||  ||| |||||| |||||||||||||| || ||| |  ||    
T  45172692 ttaatcagtcaatttgaaaagctatttcatggaaagaatcacaacaatcatttctttttcatatagaccattcgttttcccctttcccacaacggataag 45172593  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    |||| | |||||| |||| ||||| ||||||| ||||| ||||||||||| ||||    
T  45172592 tgacaaatccaaatgacaccgtta-gtaaattctacctctctttcacttattttt 45172539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 55134225 - 55134449
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcg-cataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||||||||| ||||||||||||||||| ||||||||||   |||||| |||| |||||||| |||||  | ||| |  |    
T  55134225 ttaatcagtcaatttgaaaagctatttcatagaaagaatcacaacaatcatttctttttttacataaatcattcgttttcccttttcccgcaacggataa 55134324  T
Q  100 gtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    || | |  |||||| ||||  ||||| |||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||| |||| |||  |||| ||    
T  55134325 gtaataaatccaaatgacactgttag-taaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttttgatcctgattt 55134423  T
Q  199 tttaataaagtttagctacacaaaaa 224  Q
    |||||||||| |||||||||||||||    
T  55134424 tttaataaagcttagctacacaaaaa 55134449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27632415 - 27632640
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||||||||||||| |||| ||| |||||||||||||||||| |||| |||| ||| |||||||||| |||| | ||| |||||| | || ||  || |    
T  27632415 ttaattagtcaatttgaaaagctacttcattgaaagaatcacatcaatcatttttttcttcgcataaatcattcgctttacccttttccacaacagagta 27632514  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--- 195  Q
    ||||| | ||||||| ||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| |||||       
T  27632515 gtgacaaatccaaacaacaccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgattt 27632611  T
Q  196 ctttttaataaagtttagctacacaaaaa 224  Q
     |||||||| ||||||| |||||||||||    
T  27632612 ttttttaatgaagtttaactacacaaaaa 27632640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 43154835 - 43154754
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccc 82  Q
    ||||| ||||||||||||||  ||||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||||||    
T  43154835 ttaatcagtcaatttaaaaagttatttcattaaaagaatcacaacaattatttatttttcgcataaatcattcgttttcccc 43154754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 19661396 - 19661588
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||| |||||||||  ||| ||| || |||||||||||| ||||| |||||| | || ||  ||||    
T  19661396 ttaatcagtcaatttggaaagctatttcattgaaagaaacacaacaatcctttttttctttgcataaaccattcgttttacccttttccacaacaaagga 19661495  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctg 194  Q
    ||||| | ||||||||||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| ||||    
T  19661496 gtgacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctg 19661588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11681789 - 11681564
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  |||  |||||||||||||||||||||||||| |||| ||| |||| |||||||||  ||||| |||||| | || ||  | ||    
T  11681789 ttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttcttcgaataaaccatccgttttacccttttccacaacagatga 11681690  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--c 196  Q
    ||||| | ||||||| ||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || || |||||| |||||       
T  11681689 gtgacaaatccaaacaacaccgttagataaatttcacc--tctttcacttaatttttttttaattcctttcatgtttagaactttttctgattctgattt 11681592  T
Q  197 tttttaataaagtttagctacacaaaaa 224  Q
    |||||||| || ||||||||||||||||    
T  11681591 tttttaatgaaatttagctacacaaaaa 11681564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11690068 - 11689843
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  |||  |||||||||||||||||||||||||| |||| ||| |||| |||||||||  ||||| |||||| | || ||  | ||    
T  11690068 ttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttcttcgaataaaccatccgttttacccttttccacaacagatga 11689969  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--c 196  Q
    ||||| | ||||||| ||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || || |||||| |||||       
T  11689968 gtgacaaatccaaacaacaccgttagataaatttcacc--tctttcacttaatttttttttaattcctttcatgtttagaactttttctgattctgattt 11689871  T
Q  197 tttttaataaagtttagctacacaaaaa 224  Q
    |||||||| || ||||||||||||||||    
T  11689870 tttttaatgaaatttagctacacaaaaa 11689843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 16072611 - 16072773
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcatt----gaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgt 95  Q
    ||||| ||||||||| ||||||||||||| |    ||||||||||||||||| |||| ||| ||||||||||| ||||||||| |||||| | || ||      
T  16072611 ttaatcagtcaatttgaaaaactatttcaatgaaagaaagaatcacaacaatcatttttttcttcgcataaactatttgttttacccttttccacaacag 16072710  T
Q  96 aggagtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttatttt 159  Q
    ||||||||| |  ||||| ||||||||||| ||||||| |||  |||||||||||||||| ||||    
T  16072711 aggagtgacaaacccaaatgacatcgttagataaatttcacc--tctttcacttaattttttttt 16072773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 154
Target Start/End: Original strand, 44478062 - 44478210
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt--ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac 104  Q
    |||||||||  ||| ||||||||||||||||||||||||||| |||| |||  ||||||||||| ||| ||||| |||||| | || ||  |||||||||    
T  44478062 agtcaatttggaaagctatttcattgaaagaatcacaacaatcattttttttcttcgcataaactattcgttttacccttttccacaacagaggagtgac 44478161  T
Q  105 -attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
     | | ||||||||| |||||| ||||||| |||  ||||||||||||||||    
T  44478162 aaattcaaacgacaccgttagataaatttcacc--tctttcacttaatttt 44478210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 23256611 - 23256750
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||||||||| ||| |||||||| |||||||||||||||||| |||| || ||| ||||||||||| ||||| |||||| | || ||  |||||    
T  23256611 ttaatcagtcaatttagaaagctatttcaatgaaagaatcacaacaatcattttttcttcccataaaccattcgttttacccttttccacaacagaggag 23256710  T
Q  101 tgac-attccaaacgacatcgttaggtaaattttacctat 139  Q
    |||| | | ||||||||| || ||| ||||||| ||||||    
T  23256711 tgacaaattcaaacgacaccggtagataaatttcacctat 23256750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 26329046 - 26328853
Alignment:
Q  33 aaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtga-cattccaaacgacatcgttaggtaaatt 131  Q
    ||||||||||||| || |||| ||||| | |||||||||||| |||||||||||| || ||| |||| |||  | | |||||||||   |||||||||||    
T  26329046 aaagaatcacaacgatcatttattttttggataaaccatttg-tttcccctttcccacaacggaggaatgataaattcaaacgacacttttaggtaaatt 26328948  T
Q  132 ttacctatctttcacttaatt-ttattttgttttgtttcgtgtttaaaagttcttctgaatctga-ctttttaataaagtttagctacacaaaaa 224  Q
    | |||| ||||| |||||||| || |||| |||  |||| |||||| || ||||||| | |||||  |||||||| |||||||||||||||||||    
T  26328947 tcacctctcttttacttaattctttttttatttcttttcatgtttagaaattcttctaattctgatttttttaatgaagtttagctacacaaaaa 26328853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 51066449 - 51066314
Alignment:
Q  23 tatttcattgaaagaatcacaacaattatttcttttt--cgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatc 119  Q
    |||||||||||||||||||||||||| |||| |||||  ||||||||||||||||||||||  |||| |  ||| ||||||||| | |||||| ||||      
T  51066449 tatttcattgaaagaatcacaacaatcattttttttttccgcataaaccatttgttttccc--ttcccaaaacgaaggagtgacaaatccaaatgacact 51066352  T
Q  120 gttaggtaaattttacctatctttcacttaattttatttt 159  Q
    ||||||||||||| |||  ||||||||||| ||| |||||    
T  51066351 gttaggtaaatttcacc--tctttcacttattttaatttt 51066314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 28463619 - 28463482
Alignment:
Q  17 aaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacg 114  Q
    |||| |||||||||||||| |||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || |   ||||||||| | | ||||||    
T  28463619 aaaagctatttcattgaaaaaatcacaacaatcatttttttcttcgcataaaccattcgttttgcccttttccacaatagaggagtgacaaattcaaacg 28463520  T
Q  115 acatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||| |||||| ||||||| |||  ||||||||||||||||    
T  28463519 acaccgttagataaatttcacc--tctttcacttaatttt 28463482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 29221647 - 29221469
Alignment:
Q  22 ctatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacgacatc 119  Q
    ||||||||||||| ||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||||||| | |  |||||||| |    
T  29221647 ctatttcattgaaggaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgacaaatttaaacgacacc 29221548  T
Q  120 gttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    ||| | | ||||| |||  |||||||||||||||| ||||  ||  |||| | |||| |||||||||||| ||||| |||||    
T  29221547 gttggattaatttcacc--tctttcacttaatttt-ttttaattcctttcatatttagaagttcttctgattctgatttttt 29221469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 29579897 - 29580050
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||| || |||| |||||||| |||||||||||||||||| |||| ||| ||||||||||| ||| ||||| || ||| | || ||  || |    
T  29579897 ttaatcagtcaaattgaaaagctatttcaatgaaagaatcacaacaatcatttttttcttcgcataaacaattcgttttaccattttccacaacagagta 29579996  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||| | |||||| || | |||||| ||||||| |||  ||||||||||||||||    
T  29579997 gtgacaaatccaaatgataccgttagataaatttcacc--tctttcacttaatttt 29580050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24449150 - 24449200
Alignment:
Q  8 gtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttt 58  Q
    |||||||| |||||||||||| | ||||||| |||||||||||||||||||    
T  24449150 gtcaatttgaaaaactatttcttagaaagaaccacaacaattatttctttt 24449200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 9925292 - 9925332
Alignment:
Q  179 agttcttctgaatctgactttttaataaagtttagctacac 219  Q
    ||||||||||| ||||| |||||||||||| ||||||||||    
T  9925292 agttcttctgattctgattttttaataaagcttagctacac 9925332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 220
Target Start/End: Complemental strand, 3748607 - 3748396
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacattc 108  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||| | |||||||||||||||||||    
T  3748607 tcaatttgaaaagctatttcattgaaagaatcacaacaattatttctttgtcacataaactattcgttttcccctttcatgcgacgtaggagtgacattc 3748508  T
Q  109 caaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaag 208  Q
    |||| |||| |||||||||||||| || | |||||||||||||||||||||||||| |||| | ||||||||||||||||| | |||||||||||| |||    
T  3748507 caaatgacaccgttaggtaaatttcacatctctttcacttaattttattttgttttatttcatatttaaaagttcttctgattttgactttttaatgaag 3748408  T
Q  209 tttagctacaca 220  Q
     |||||||||||    
T  3748407 cttagctacaca 3748396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 6294279 - 6294496
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacattc 108  Q
    ||||||| |||| | ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||    
T  6294279 tcaatttgaaaagcaatttcattgaaagaatcacaacaatcatttctttttcgcataaactattcgttttcccctttcccacgacgtaggagtgacattc 6294378  T
Q  109 caaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaataa 206  Q
    ||||||||| |||||||||||||| |||| |||||||| |||||||||||| ||||||||| |||||| |||||||| ||| |||||   |||||||| |    
T  6294379 caaacgacaccgttaggtaaatttcacctctctttcacataattttattttattttgtttcatgtttagaagttcttttgattctgattttttttaatga 6294478  T
Q  207 agtttagctacacaaaaa 224  Q
    || ||||||||| |||||    
T  6294479 agcttagctacaaaaaaa 6294496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 30915413 - 30915191
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-----ttcgcataaaccatttgttttcccctttcctacgacgt 95  Q
    ||||| ||||||||| |||| |||||| |||||||||||||||||||| ||||||||     |||||||||||||||  || ||||||||| ||||||||    
T  30915413 ttaatcagtcaatttgaaaagctatttaattgaaagaatcacaacaatcatttctttaatttttcgcataaaccattcattatcccctttcttacgacgt 30915314  T
Q  96 aggagtgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga 195  Q
    || ||||||||| ||||||||| ||||| |||||||||| || ||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||||    
T  30915313 agaagtgacatttcaaacgacaccgttatgtaaattttatctctctttcacttaattttattttattttgtttcatgtttataagttcttctgattctga 30915214  T
Q  196 ctttttaataaagtttagctaca 218  Q
     |||||||| ||| ||| |||||    
T  30915213 ttttttaatgaagcttaactaca 30915191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 21946124 - 21946315
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| |||| |||| |||| ||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||| ||||||||| ||||| |||    
T  21946124 ttaatcagtctatttgaaaagctatttcattgaaagaaccataacaattatttctttttcgcataaacaattcgttttcctctttcctac-acgtaagag 21946222  T
Q  101 tgacattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga 195  Q
    ||||||| ||||||||| |||||||||||||  |||| |||||||||||| |||||||||||||||||| | |||||||||| |||||| |||||    
T  21946223 tgacatt-caaacgacaccgttaggtaaattccacctctctttcacttaa-tttattttgttttgtttcatatttaaaagttattctgattctga 21946315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 1093081 - 1092854
Alignment:
Q  7 agtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-a 105  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |  ||| |  |||||| |    
T  1093081 agtcaatttaaaaagctatttcat-gaaagaatcacaacaatcatttctttttcacataaaccattcgttttcccctttcccaaaacggataagtgacaa 1092983  T
Q  106 ttccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaata 205  Q
     |||||| |||| ||||| ||||||| ||| | |||||||||||||||| || | ||| ||||| |||||| ||| |||| ||| ||| | |||||||||    
T  1092982 atccaaatgacaccgtta-gtaaattctacatctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttttgattctaattttttaata 1092884  T
Q  206 aagtttagctacacaaaaagaattgcgtttt 236  Q
    ||| ||||||||| ||||| |||||||||||    
T  1092883 aagcttagctacataaaaa-aattgcgtttt 1092854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 29308514 - 29308280
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggag 100  Q
    ||||| ||||||||| ||||||||||||||||||  |||||||||||| ||||||||||| |||||| |||| |||||||||||||| || | | |  ||    
T  29308514 ttaatcagtcaatttgaaaaactatttcattgaagtaatcacaacaatcatttctttttcacataaatcattcgttttcccctttcccacaatggataag 29308415  T
Q  101 tga-cattccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttt 199  Q
    |||  | || ||| |||| ||||| ||||||| ||||| |||||||||||||||| || | ||| ||||| |||||| ||| |||| ||| ||||| |||    
T  29308414 tgataaatctaaatgacaccgtta-gtaaattctacctctctttcacttaatttttttgtatttcgtttcatgtttagaagctcttatgattctgatttt 29308316  T
Q  200 ttaataaagtttagctacacaaaaagaattgcgtttt 236  Q
    ||||||||| ||| ||||||||||| |||||||||||    
T  29308315 ttaataaagcttaactacacaaaaa-aattgcgtttt 29308280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2618372 - 2618594
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  2618372 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaattatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 2618471  T
Q  100 gtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga-ct 197  Q
    ||||||  ||||||||||| |||| | ||||||| ||||  |||||||||||||||  |||  ||  |||| ||||||||||||||||| | |||||  |    
T  2618472 gtgacaaatccaaacgacaccgttggataaatttcacct--ctttcacttaatttt--tttaattgctttcatgtttaaaagttcttcttattctgattt 2618567  T
Q  198 ttttaataaagtttagctacacaaaaa 224  Q
    ||||||| || |||| |||||||||||    
T  2618568 ttttaatgaaatttaactacacaaaaa 2618594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 350464 - 350658
Alignment:
Q  33 aaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtgacat-tccaaacgacatcgttaggtaaatt 131  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| ||| ||||| |  ||| |||| ||| |  || |||||||| ||| |||||||||    
T  350464 aaagaatcacaacaatcatttctttttcgcataaacaatttgttt-cccttttcccataacggaggaatgataaatcaaaacgacaccgtcaggtaaatt 350562  T
Q  132 ttacctat--ctttcacttaattttattttgttttgtttcgtgtttaaaagttctt-ctgaatctgactttttaataaagtttagctacacaaaaa 224  Q
    | ||||||  |||||| |||||||| |||| ||| ||||| |||||| |||||||| || | ||| | |||||||| |||||||||||||||||||    
T  350563 tcacctatatctttcatttaatttttttttatttcgtttcatgtttagaagttctttctaattctaattttttaatgaagtttagctacacaaaaa 350658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 57705 - 57858
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||| ||| |||||||||| |||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || |   ||||    
T  57705 ttaatcagtcaatttagaaagctatttcattcaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaatagagga 57804  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||| | ||||||||||| |||||| ||||||| |||  ||||||||||||||||    
T  57805 gtgacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaatttt 57858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 3514889 - 3514698
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtg-acat 106  Q
    |||||||  ||| |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||||| | |     
T  3514889 tcaatttggaaagctatatcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagaggagtgaaaaa 3514790  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgacttttt 201  Q
    ||||||||||| | |||| ||||||| |||  |||||||||||||||| ||||  ||  |||| ||||||||||||||||||| ||||| |||||    
T  3514789 tccaaacgacaccattagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttaaaagttcttctgattctgatttttt 3514698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 628142 - 628010
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||| ||||| || ||  || |    
T  628142 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttcccttttcc-acaacagagaa 628044  T
Q  100 gtga-cattccaaacgacatcgttaggtaaattt 132  Q
    ||||  | |||||||||||||||||| |||||||    
T  628043 gtgataaatccaaacgacatcgttagataaattt 628010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 224
Target Start/End: Original strand, 11088706 - 11088811
Alignment:
Q  120 gttaggtaaattttacctatctttcacttaatt-ttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctaca 218  Q
    ||||||||||||| |||| |||||||||||||| || |||| ||| ||||| |||||| |||||||||| | ||||| |||||||| |||||||||||||    
T  11088706 gttaggtaaatttcacctctctttcacttaattctttttttatttcgtttcatgtttagaagttcttctaattctgattttttaatgaagtttagctaca 11088805  T
Q  219 caaaaa 224  Q
    ||||||    
T  11088806 caaaaa 11088811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 12614763 - 12614569
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||  ||||| |||||| | || ||  ||||    
T  12614763 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccatccgttttacccttttccacaacagagga 12614664  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    || || | | ||||||||  |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| ||| ||||    
T  12614663 gtaacaaattcaaacgac--cgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctaactt 12614569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 6754223 - 6754376
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  6754223 ttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 6754322  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||| | |||||| |||| ||||   ||||||| |||  ||||||||||||||||    
T  6754323 gtgacaaatccaaatgacaccgttgaataaatttcacc--tctttcacttaatttt 6754376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 29401157 - 29401308
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| ||||  |||||||||||||||||||||||||| |||| ||| ||||||||||||||| || || |||||| | |||||  ||||    
T  29401157 ttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgtcttacccttttccacgacagagga 29401256  T
Q  100 gtgacat-tccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||||  |||||| |||| |  ||| ||||||| ||||  |||||||||||||||    
T  29401257 gtgacaaatccaaatgacacc--tagataaatttcacct--ctttcacttaatttt 29401308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 29149420 - 29149573
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  |||  || ||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || ||  ||||    
T  29149420 ttaatcagtcaatttggaaagttagttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacagagga 29149519  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||| | ||||||||| | ||||| |||||||| |||  |||||||| |||||||    
T  29149520 gtgacaaatccaaacgataccgttacgtaaatttcacc--tctttcacctaatttt 29149573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 7525213 - 7525061
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  |||  ||||| |||||||||||||||||||| |||| ||| ||||||||||| |||| |||| |||||| | || ||  ||||    
T  7525213 ttaatcagtcaatttggaaagttattttattgaaagaatcacaacaatcatttttttcttcgcataaacaatttattttacccttttccacaacagagga 7525114  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaatttt 154  Q
    ||||| | |||||| |||| |||||| ||||||| |||||  ||||||||||||||    
T  7525113 gtgacaaatccaaa-gacaccgttagataaatttcaccta--tttcacttaatttt 7525061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 11088564 - 11088640
Alignment:
Q  2 taattagtcaatttaaaaaactatttcattgaaa-gaatcacaacaattatttctttttcgcataaaccatttgttt 77  Q
    |||| ||||||||| |||| |||||||| | ||| ||||||||||||| |||||||||| |||||||||||||||||    
T  11088564 taatcagtcaatttgaaaagctatttcaataaaaagaatcacaacaatcatttcttttttgcataaaccatttgttt 11088640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 6360777 - 6360909
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| ||||  |||| ||||||||||||||||||||| |||| ||| |||| |||||||||| ||||| |||||| | || ||  ||||    
T  6360777 ttaatcagtcaatttgaaaagttatt-cattgaaagaatcacaacaatcatttttttcttcgtataaaccattcgttttacccttttccacaacagagga 6360875  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattt 132  Q
    ||||| | | ||||||||| |||||| |||||||    
T  6360876 gtgacaaattcaaacgacaccgttagataaattt 6360909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 1690624 - 1690541
Alignment:
Q  141 tttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactttttaataaagtttagctacacaaaaa 224  Q
    ||||||||||| || || | ||| ||||| |||||| ||| | |||||| ||||| ||||| ||||||||||||||||||||||    
T  1690624 tttcacttaatatttttgtatttcgtttcatgtttagaagcttttctgattctgatttttttataaagtttagctacacaaaaa 1690541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 1690672 - 1690621
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttc 60  Q
    ||||||| ||||  |||||||||||||||||||||||||| |||||||||||    
T  1690672 tcaatttgaaaatttatttcattgaaagaatcacaacaatcatttctttttc 1690621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31861018 - 31861065
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaat 48  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||||||    
T  31861018 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaat 31861065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 22503760 - 22503845
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttccccttt 85  Q
    ||||| ||||||||| |||||||||||| |||||||||| | |||||| |||| ||| |||| ||||||||||  |||| ||||||    
T  22503760 ttaatcagtcaatttgaaaaactatttcgttgaaagaattaaaacaatcatttttttcttcgtataaaccattcattttacccttt 22503845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14893464 - 14893412
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattattt 53  Q
    ||||| ||||||||| |||||||||||| || |||||||||||||||| ||||    
T  14893464 ttaatcagtcaatttgaaaaactatttcgttaaaagaatcacaacaatcattt 14893412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 164
Target Start/End: Original strand, 19231637 - 19231793
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgttttcccctttcctacgacgtaggagtga-catt 107  Q
    ||||||| |||| ||||  |||||||| |||||||||||| |||||||||||| |||||| |||  |||||   ||||| || | | || |||||  | |    
T  19231637 tcaatttgaaaagctatgacattgaaaaaatcacaacaatcatttctttttcgtataaactattctttttcaattttcccacaatggagaagtgataaat 19231736  T
Q  108 ccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgtttt 164  Q
    |||||| | |   |||||||||||| |||| |||||||||||||||| |||| ||||    
T  19231737 ccaaacaatactcttaggtaaatttcacctctctttcacttaatttttttttttttt 19231793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 22836 - 22628
Alignment:
Q  17 aaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-attccaaacg 114  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||| |||||| | || || |||||||||| | | ||||||    
T  22836 aaaaactatttcattgaaagaatcacaataattatttttttcttcgcataaaccattcgttttacccttttccacaacataggagtgacaaattcaaacg 22737  T
Q  115 acatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaataaagttta 212  Q
    ||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| |||||||||||| |||||   ||||||||||| ||||    
T  22736 acaccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaagttcttctgattctgattttttttaataaaattta 22640  T
Q  213 gctacacaaaaa 224  Q
    ||||||||||||    
T  22639 gctacacaaaaa 22628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 1086 - 1303
Alignment:
Q  9 tcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttt-ttcgcataaaccatttgttttcccctttcctacgacgtaggagtgac-at 106  Q
    |||||||  ||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||| |||||| | || || |||||||||| |     
T  1086 tcaatttggaaagctatttcattgaaagaatcacaacaatcatttttttcttcgcataaaccattcgttttacccttttccacaacataggagtgacaaa 1185  T
Q  107 tccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--ctttttaat 204  Q
    ||||||||||| |||||| ||||||| |||  ||||||| |||||||| ||||  ||  |||| |||||| || ||||||||| |||||   ||||||||    
T  1186 tccaaacgacaccgttagataaatttcacc--tctttcatttaatttttttttaattcctttcatgtttagaacttcttctgattctgattttttttaat 1283  T
Q  205 aaagtttagctacacaaaaa 224  Q
     || ||||||||||||||||    
T  1284 gaaatttagctacacaaaaa 1303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 16727 - 16952
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattat-ttctttttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| ||||||||| |||| |||||||||||||||||||||||| || || || || ||||||||||||||| ||||| |||||| | || ||  ||||    
T  16727 ttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacgatcatatttttcttcgcataaaccattcgttttacccttttccacaacagagga 16826  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctga--- 195  Q
    || || | ||||||||||| |||||| ||||||| |||  |||||||||||||||| ||||  ||  |||| |||||| || ||||||||| ||| |       
T  16827 gtaacaaatccaaacgacaccgttagataaatttcacc--tctttcacttaatttt-ttttaattcctttcatgtttagaacttcttctgattctaattt 16923  T
Q  196 ctttttaataaagtttagctacacaaaaa 224  Q
     |||||||| || ||||||||||||||||    
T  16924 ttttttaatgaaatttagctacacaaaaa 16952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 8442 - 8336
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttcttttt--cgcataaaccatttgttttcccctttcctacgacgtagg 98  Q
    ||||| |||||||||  ||||||||||||||||||||||||||| |||||||| |||||  | || |||||||| ||||||||| ||||  | ||| |||    
T  8442 ttaatcagtcaatttcgaaaactatttcattgaaagaatcacaaaaattattttttttttccacacaaaccattcgttttcccccttcccgcaacggagg 8343  T
Q  99 agtgaca 105  Q
    |||||||    
T  8342 agtgaca 8336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17179 - 16956
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaatta-tttctttttcgcataaaccatttgttttcccctttcctacgacgtagga 99  Q
    ||||| |||||||||  ||| ||||||| ||||||||||||||||||| | |||||| ||||||||||||||| ||||| || ||| | || ||  || |    
T  17179 ttaatcagtcaatttggaaagctatttcgttgaaagaatcacaacaatcattttcttcttcgcataaaccattcgttttaccattttccacaacaaagaa 17080  T
Q  100 gtgac-attccaaacgacatcgttaggtaaattttacctatctttcacttaattttattttgttttgtttcgtgtttaaaagttcttctgaatctgactt 198  Q
    ||||| | | ||||||||| |||| | ||||||| |||  |||||||||||||||  ||||  ||  |||| |||||| || |||||| || ||||| ||    
T  17079 gtgacaaattcaaacgacaccgttggataaatttcacc--tctttcacttaattt--ttttaattcctttcatgtttagaacttcttcagattctgattt 16984  T
Q  199 --tttaataaagtttagctacacaaaaa 224  Q
      |||||| || ||||||||||||||||    
T  16983 tatttaatgaaatttagctacacaaaaa 16956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 46220 - 46143
Alignment:
Q  1 ttaattagtcaatttaaaaaactatttcattgaaagaatcacaacaattatttctttttcgcataaaccatttgtttt 78  Q
    ||||| |||||||||  ||  |||||||||||||| |||||||||||| |||| || ||| ||||||||||| |||||    
T  46220 ttaatcagtcaatttggaagtctatttcattgaaataatcacaacaatcattttttcttcacataaaccattcgtttt 46143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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