View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_high_10 (Length: 305)
Name: NF8751_high_10
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 30343120 - 30343402
Alignment:
| Q |
1 |
aaagaaggaagagagaggttaatgatgttttgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggt |
100 |
Q |
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| T |
30343120 |
aaagaaggaagagagaggttaatgatgttttgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggt |
30343219 |
T |
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| Q |
101 |
tgagagtagcattagaggaacaaggtggggttggtgtttcatcggaaacgtaaccgaagttgagttcaacaatgtgtggttggttttgatcatagtcgca |
200 |
Q |
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| T |
30343220 |
tgagagtggcgttagaggaacaaggtggggttggtgtttcatcggaaacgtaaccgaagttgagttcaacaatgtgtggttggttttgatcatagtcgca |
30343319 |
T |
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| Q |
201 |
aacaacgccgtgtggggcggagagacagagatcatcggggaaaagtgtttgccatggaatggttgggttgagggagttgagaa |
283 |
Q |
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| T |
30343320 |
aacaacgccgtgtggagcggagagacagagatcatcggggaaaagtgtttgccatggaatggttgggttgagggagttgagaa |
30343402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 30333045 - 30332972
Alignment:
| Q |
31 |
tgtgtgttgttgaagcatttgtagaagaagagttttcggaggtaggagaaagaggtgaagagagttgggttgag |
104 |
Q |
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| T |
30333045 |
tgtgtgttgttgaagcatttgtggaatgtgagtttgcggaggtagttgaaaggggttaagagtattgggttgag |
30332972 |
T |
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