View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_high_12 (Length: 261)
Name: NF8751_high_12
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4894383 - 4894622
Alignment:
| Q |
1 |
cttaatttagactgcttggggcatttattcaatggtnnnnnnn-gtcatagtttttgttttattttaaaaacaaagatattgtc---------aaattta |
90 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
4894383 |
cttaatttagactgcttggggcatttattcaatggtaaaaaaaagtcatagtttttgttttattttaaaaacaaagatactgtcaaatttacaaaattta |
4894482 |
T |
|
| Q |
91 |
tcattagtgataagaaaaagctaaattccaagaattnnnnnnntggaagtaatattaacacatcatcatataaaattagacaattctaccnnnnnnnnta |
190 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
4894483 |
tcattagtgataagaaaaagctaaattccaagaatt-aaaaaatggaagtaatattaacacttcatcatataaaattagacaattctaccaaaaaaaata |
4894581 |
T |
|
| Q |
191 |
taaaattagacaagatattttttgataaaattcagctttaa |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
4894582 |
taaaattagacaagatattttttgataaaattcagctttaa |
4894622 |
T |
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