View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_high_16 (Length: 249)
Name: NF8751_high_16
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 4894683 - 4894925
Alignment:
| Q |
1 |
ttttcacaaacagattttaaattgatatgtgaaattaattaaggaggggnnnnnnnnnnnnnnnnggaaacaaagagggctttcgctaagaaaagagaga |
100 |
Q |
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| T |
4894683 |
ttttcacaaacagattttaaattgatatgtgaaattaattaaggaggggtttttattttttatttggaaacaaagagggctttcgctaagaaaagagaga |
4894782 |
T |
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| Q |
101 |
attacaaagaaattaatcgaggagtagcaattccaaaaacatcatc--aataaccacttgaatgatttgagtggactttctgttgttaagatgttaaaga |
198 |
Q |
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| T |
4894783 |
attacaaagaaattaatcgaggagtagcaattccaaaaacatcatataaataaccacttgaatgatttgagtggactttctgttgttaagatgttaaaga |
4894882 |
T |
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| Q |
199 |
ttacgtaacattttaatagtatggttaaattgatgagaataat |
241 |
Q |
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| T |
4894883 |
ttacgtaacattttaatagtatggttaaattgatgagtataat |
4894925 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 3661780 - 3661859
Alignment:
| Q |
74 |
agagggctttcgct-aagaaaagagagaattacaaagaaattaatcgaggagtagcaattccaaaaacatcatcaataac |
152 |
Q |
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| T |
3661780 |
agagggctttcgcccaagaaaagaaagaactgcaaagaaattaaccgatgagcagtaactctaaaaacatcatcaataac |
3661859 |
T |
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