View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_high_17 (Length: 239)
Name: NF8751_high_17
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7279620 - 7279842
Alignment:
| Q |
1 |
cctcacagcccttggcaccactttccataacaaacctcaacacaccatagcaggctctgcgaacagcaagaccgccaagtagcttgtagcgaagggattc |
100 |
Q |
| |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7279620 |
cctcacatcccttagcaccactttccataacaaacctcaacacaccatagcaggctctgcgaacagcaagaccgccaagtaccttgtagcgaagggattc |
7279719 |
T |
|
| Q |
101 |
agcttgtgcaatggcacaaagtcccctattgttcaccttctcagcataaagttcaacactgttctcaggaaacttaaatcttttctggaccactgaggtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7279720 |
agcttgtgcaatggcacaaagtcccctattgttcaccttctcagcataaagttcaacactgttctcaggaaacttaaatcttttctggaccactgaggtc |
7279819 |
T |
|
| Q |
201 |
aactctctgatcctcctaccctt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
7279820 |
aactctctgatcctcctaccctt |
7279842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 16864302 - 16864136
Alignment:
| Q |
57 |
ctgcgaacagcaagaccgccaagtagcttgtagcgaagggattcagcttgtgcaatggcacaaagtcccctattgttcaccttctcagcataaagttcaa |
156 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| || || ||||| || |||||||||||||||||||| ||||| ||||||||||| ||||| |||| |
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| T |
16864302 |
ctgcgaacagcaagaccgccgagaagcttgtagcggagagactcagcctgagcaatggcacaaagtcccctgttgttgaccttctcagcgtaaagctcaa |
16864203 |
T |
|
| Q |
157 |
cactgttctcaggaaacttaaatcttttctggaccactgaggtcaactctctgatcctcctaccctt |
223 |
Q |
| |
|
||||||| ||||||||||| || || ||||| || |||||||||| |||||| |||||||| ||||| |
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|
| T |
16864202 |
cactgttttcaggaaacttgaacctcttctgcacaactgaggtcagctctctaatcctccttccctt |
16864136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 50357266 - 50357432
Alignment:
| Q |
57 |
ctgcgaacagcaagaccgccaagtagcttgtagcgaagggattcagcttgtgcaatggcacaaagtcccctattgttcaccttctcagcataaagttcaa |
156 |
Q |
| |
|
||||| || |||||||| ||||| |||||||| ||||| ||||||||||| ||| ||||||||||| |||||| | ||||| ||||||||||||| | |
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|
| T |
50357266 |
ctgcggacggcaagaccaccaaggagcttgtaacgaagagattcagcttgagcagcagcacaaagtcctctattgctgaccttttcagcataaagttgga |
50357365 |
T |
|
| Q |
157 |
cactgttctcaggaaacttaaatcttttctggaccactgaggtcaactctctgatcctcctaccctt |
223 |
Q |
| |
|
|||||||||||||||| ||||| || || || | || || ||| | |||||| |||||||| ||||| |
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|
| T |
50357366 |
cactgttctcaggaaagttaaacctcttatgaatcaatgtggttagctctctaatcctccttccctt |
50357432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 50356283 - 50356344
Alignment:
| Q |
1 |
cctcacagcccttggcaccactttccataacaaacctcaacacaccatagcaggctctgcga |
62 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
50356283 |
cctcacatcccttggcaccactttccataacaaacctcaaaacaccatagcaggccctgcga |
50356344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16865450 - 16865396
Alignment:
| Q |
1 |
cctcacagcccttggcaccactttccataacaaacctcaacacaccatagcaggc |
55 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
16865450 |
cctcacaacccttggcaccactttccatgacaaacctcaacacaccatagcaggc |
16865396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18174423 - 18174645
Alignment:
| Q |
1 |
cctcacagcccttggcaccactttccataacaaacctcaacacaccatagcaggctctgcgaacagcaagaccgccaagtagcttgtagcgaagggattc |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| |
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| T |
18174423 |
cctcacaacccttagcaccactttccataacaaacctcaagacaccatagcaggctctgcgaacagcaagaccgccgagaagcttgtaacgaagagattc |
18174522 |
T |
|
| Q |
101 |
agcttgtgcaatggcacaaagtcccctattgttcaccttctcagcataaagttcaacactgttctcaggaaacttaaatcttttctggaccactgaggtc |
200 |
Q |
| |
|
|| || ||||||||||| |||||||| ||||| || |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
18174523 |
ggcctgggcaatggcacagagtcccctgttgttaactttctcagcataaagctcaacactgttctcagggaacttaaaccttttctggactactgaggta |
18174622 |
T |
|
| Q |
201 |
aactctctgatcctcctaccctt |
223 |
Q |
| |
|
| ||||||||||||||| ||||| |
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|
| T |
18174623 |
agctctctgatcctccttccctt |
18174645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18225378 - 18225156
Alignment:
| Q |
1 |
cctcacagcccttggcaccactttccataacaaacctcaacacaccatagcaggctctgcgaacagcaagaccgccaagtagcttgtagcgaagggattc |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| |
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|
| T |
18225378 |
cctcacaacccttagcaccactttccataacaaacctcaagacaccatagcaggctctgcgaacagcaagaccgccgagaagcttgtaacgaagagattc |
18225279 |
T |
|
| Q |
101 |
agcttgtgcaatggcacaaagtcccctattgttcaccttctcagcataaagttcaacactgttctcaggaaacttaaatcttttctggaccactgaggtc |
200 |
Q |
| |
|
|| || ||||||||||| |||||||| ||||| || |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| |
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|
| T |
18225278 |
ggcctgggcaatggcacagagtcccctgttgttaactttctcagcataaagctcaacactgttctcagggaacttaaaccttttctggactactgaggta |
18225179 |
T |
|
| Q |
201 |
aactctctgatcctcctaccctt |
223 |
Q |
| |
|
| ||||||||||||||| ||||| |
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|
| T |
18225178 |
agctctctgatcctccttccctt |
18225156 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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