View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_high_4 (Length: 355)
Name: NF8751_high_4
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 21 - 343
Target Start/End: Complemental strand, 384728 - 384412
Alignment:
| Q |
21 |
ttctcaacccttgttcattccgattctcatttcgaaggtttcgaagccgaagacgatgactctgaattcgaagaaccttccatcgatccagcttctctcc |
120 |
Q |
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| T |
384728 |
ttctcaacccttgttcattccgattctcatttcgaaggtttcgaagccgaagacgatgactctgaattcgaagaaccttccatcgatccagcttctctcc |
384629 |
T |
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| Q |
121 |
gttcacctccttctcaatttctctccaccgatcccaatcccaatccaaaccctattaatcctactccttctccttctccaccctccgatcttcccaaatc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384628 |
gttcacctccttctcaatttctctccaccgatcccaatcc------aaaccctattaatcctactccttctccttctccaccctccgatcttcccaaatc |
384535 |
T |
|
| Q |
221 |
cactcctccttcaaccaccaccttcgatttctgggacgacgatgaattcgaaggtcttcccactcaaccacaccctgatttccaagttccaaccaccgat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
384534 |
cactcctccttcaaccaccaccttcgatttctgggacgacgatgaattcgaaggtcttcccactcaaccacaccctgatttccaagttccaaccaccgat |
384435 |
T |
|
| Q |
321 |
ccccaatccaccgataacaccaa |
343 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
384434 |
ccccaatccaccgataacaccaa |
384412 |
T |
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