View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_1 (Length: 737)
Name: NF8751_low_1
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 19 - 719
Target Start/End: Complemental strand, 2636919 - 2636218
Alignment:
| Q |
19 |
catcaagaggatgtccgatgagtgataactcatcagaaatggatttcatggactgaaggtatgatgcagcagaagatgtcccttttttgagagtgttgag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636919 |
catcaagaggatgtccgatgagtgataactcatcagaaatggatttcatggactgaaggtatgatgcagcagaagatgtcccttttttgagagtgttgag |
2636820 |
T |
|
| Q |
119 |
acgctctttcagagacatgacccgagatagcagaccaggaaaccggttgaaaatcggcaaaaactggaaaaccagcgctttgatcgattccacatatcaa |
218 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
2636819 |
acgctcttacagagacatgatccgagatagcagaccaggaaaccggttgaaaaccggcaaaaactggaaaaccggcggtttgatcgattccacatatcaa |
2636720 |
T |
|
| Q |
219 |
actagttttccctttttacatcttcaaaatttaaaacgacaggacacgagttgctggaagtggaaccattgtagatacgattgtctaggaatgggggcat |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2636719 |
actagttttccctttttacatcttcaaaatttaaaacgacaggacacgagttgctggaagtggaaccattgtggatacgattgtctaggaatgggggcat |
2636620 |
T |
|
| Q |
319 |
aaatgttgggtcacatagatcctggaagatgaagaagataatttggagagacaagagatgtagtaaggctctgaggcaataacaagtgaaaagttatgtg |
418 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636619 |
aaatgttgggtcacgtagatcctggaagatgaagaagataatttggagagacaagagatgtagtaaggctctgaggcaataacaagtgaaaagttatgtg |
2636520 |
T |
|
| Q |
419 |
tggcgcatacgtagatagtatggtcaatacaaagggaattagggttacgttcttatatgagtcttgttaatcagtgttctcgtaatatgaatttattaaa |
518 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2636519 |
cagcgcatacattgatagtatggtaaatacaaagggaattagagttacgttcttatatgagtcttgttaatcagtgttctcgtaatatgaatttattaaa |
2636420 |
T |
|
| Q |
519 |
taagctcgaaatctgcttattatatattattccatagtaattaattgtcttctcaccaaatggaagatatgatcaattcataatttacttcataggcatt |
618 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2636419 |
taagctcgaaatttgcttattatatattattccatagtaattaattgtcttctcaccaaatggaagatatgatcaattcataatttacttcataggcatt |
2636320 |
T |
|
| Q |
619 |
gaacttgctatacatgaataaaattatagctaggttta-nnnnnnnnnnggcaaatagctaggtttagttgtctctgatatatattactctcatagtgga |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
2636319 |
gaacttgctatacatgaataaaattatagctaggtttattattttttttagcaaatagctaggtttaattgtctctaatatatattactctcatagtgga |
2636220 |
T |
|
| Q |
718 |
ga |
719 |
Q |
| |
|
|| |
|
|
| T |
2636219 |
ga |
2636218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 19734172 - 19734298
Alignment:
| Q |
19 |
catcaagaggatgtccgatgagtgataactcatcagaaatggatttcatggactgaaggtatgatgcagcagaagatgtcccttttttgagagtgttgag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
19734172 |
catcaagaggatgtccgatgagtgataactcatcagaaatggatttcatggactgaaggtatgatgcagcagaagatgtcccttttttgagagagttgag |
19734271 |
T |
|
| Q |
119 |
acgctctttcagagacatgacccgaga |
145 |
Q |
| |
|
|||||||||||||||||||| |||||| |
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|
| T |
19734272 |
acgctctttcagagacatgatccgaga |
19734298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 40914824 - 40914943
Alignment:
| Q |
19 |
catcaagaggatgtccgatgagtgataactcatcagaaatggatttcatggactgaaggtatgatgcagcagaagatgtcccttttttgagagtgttgag |
118 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
40914824 |
catcaagaggatgtccgatgagcgataactcatcaaaaatggatttcatggactgaaggtatgatgcagcagaagatgtccctttttttagagagttgag |
40914923 |
T |
|
| Q |
119 |
acgctctttcagagacatga |
138 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
40914924 |
acgctctttcagagacatga |
40914943 |
T |
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