View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_11 (Length: 330)
Name: NF8751_low_11
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 9661600 - 9661920
Alignment:
| Q |
13 |
acatcaaacaaaagccaacaagatccaacaaagtcannnnnnnnnnnnn--agactaaattttgatgatgacaagatgaataactaaagaacccaataac |
110 |
Q |
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| T |
9661600 |
acatcaaacaaaagccaacaagatccaacaaagtcaacacacacacacacaagactaaattttgatgatgacaagatgaataactaaagaacccaagaac |
9661699 |
T |
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| Q |
111 |
acaaagagttaatattacaaacc-aaaaagagatcaagaacgaaggttggattttgaaggaagagaagtggtgggaccctcaaaaggaagatgagaaaca |
209 |
Q |
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| T |
9661700 |
acaaagagttaatattacaaaccgaaaaagagatcaagaacgaaggttggattttgaaggaagagaagtggtgggaccctcaaaaggaagatgagaaaca |
9661799 |
T |
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| Q |
210 |
ggcttagtaaccatgagaggaagatcatcgttgttgttatcatcttcaatgtcagtggtggtaaggttgatgcaagaacaacgttccaaggaagcaaaga |
309 |
Q |
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| T |
9661800 |
ggggtagtaaccatgagaggaagatcatcgttgttgttatcatcttcaatgtcagtggtggtaaggttgatgcaagaacaacgttccaaggaagcaaaga |
9661899 |
T |
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| Q |
310 |
aagcagaagccacgttggtgc |
330 |
Q |
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| T |
9661900 |
aagcagaagccacgttggtgc |
9661920 |
T |
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