View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_12 (Length: 322)
Name: NF8751_low_12
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 9542236 - 9542378
Alignment:
| Q |
23 |
agcatatattattagggttaggtttcacaaggcaacattactaatttgtagtatatgataatgtctaatgtgtaatgtattacctttnnnnnnnngtata |
122 |
Q |
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| T |
9542236 |
agcacatattattagggttaggtttcacaaggcaacattactaatttgtagtagatgataatgtctaatgtgtaatgtgttacctttaaaaaaaagtata |
9542335 |
T |
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| Q |
123 |
acatttgcataattaactta----ttataagttccccggtatt |
161 |
Q |
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| T |
9542336 |
acatttgcatgattaacttatttgttataagttccccggtatt |
9542378 |
T |
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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 236 - 318
Target Start/End: Original strand, 9542420 - 9542500
Alignment:
| Q |
236 |
taaagcatcgtcataacaaacaattgttacttaaataaatgagactatagcttttttaaaaacctattaattagaattatcta |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| |
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| T |
9542420 |
taaagcatcgtcataacaaacaattgttacttaaataaatgagac--taacttttttaaaaacctattaattagaagtatcta |
9542500 |
T |
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