View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8751_low_13 (Length: 315)

Name: NF8751_low_13
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8751_low_13
NF8751_low_13
[»] chr7 (2 HSPs)
chr7 (1-297)||(30434130-30434420)
chr7 (8-72)||(12742646-12742710)
[»] chr1 (2 HSPs)
chr1 (135-264)||(52226891-52227020)
chr1 (161-261)||(47805425-47805525)
[»] scaffold1348 (1 HSPs)
scaffold1348 (8-72)||(1581-1645)
[»] scaffold0061 (1 HSPs)
scaffold0061 (8-72)||(4007-4071)
[»] chr5 (2 HSPs)
chr5 (161-237)||(19986665-19986741)
chr5 (8-54)||(16800299-16800345)
[»] chr3 (2 HSPs)
chr3 (8-72)||(17194594-17194658)
chr3 (8-72)||(15604846-15604911)
[»] chr8 (1 HSPs)
chr8 (8-72)||(24638833-24638897)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 30434420 - 30434130
Alignment:
Q  1 tttaatttatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttagcagggttcaagaggcgcagccgcagccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||       
T  30434420 tttaatttatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttagcagggttcaagaggcgcagtcgcag--- 30434324  T
Q  101 cagaagaacctcgtgaattcaacaatggccaggatcaaagttcacgagttgaggcagaagaccaaagctgatctattggctcagctcaaagacctcaaag 200  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434323 ---aagaacctcgtgaattcaacaatggccaggatcaaagttcacgagttgaggcagaagaccaaagctgatctattggctcagctcaaagacctcaaag 30434227  T
Q  201 ctgaactagctttgctccatgttgctaaggccactgggggtgcacccaacaatctctccaaaattaaggaggtaaggttgtcgattgctcaggtttt 297  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434226 ctgaactagctttgctccgtgttgctaaggccactcgggctgcacccaacaatctctccaaaattaaggaggtaaggttgtcgattgctcaggtttt 30434130  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 12742646 - 12742710
Alignment:
Q  8 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 72  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  12742646 tatgtgatgcatgaaatgtatgtttagttagcgcatgtatgagatgtatgcttaacttgttttag 12742710  T

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Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 135 - 264
Target Start/End: Original strand, 52226891 - 52227020
Alignment:
Q  135 tcaaagttcacgagttgaggcagaagaccaaagctgatctattggctcagctcaaagacctcaaagctgaactagctttgctccatgttgctaaggccac 234  Q
    |||| ||||| |||||||||||||| | |||| ||||||| ||||||||||||||||| ||||||||||||||  |||||||||  |||||||||| |||    
T  52226891 tcaaggttcatgagttgaggcagaaaaacaaaactgatctgttggctcagctcaaagatctcaaagctgaactttctttgctccgagttgctaaggtcac 52226990  T
Q  235 tgggggtgcacccaacaatctctccaaaat 264  Q
    ||| |||||||||||||| |||||||||||    
T  52226991 tggtggtgcacccaacaagctctccaaaat 52227020  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 47805425 - 47805525
Alignment:
Q  161 accaaagctgatctattggctcagctcaaagacctcaaagctgaactagctttgctccatgttgctaaggccactgggggtgcacccaacaatctctcca 260  Q
    |||||| ||||||| |||||||| |||||||||||||| ||||||||   ||||||   ||||||||||| |||||| |||||||||||||| |||||||    
T  47805425 accaaatctgatctgttggctcaactcaaagacctcaaggctgaactcattttgctatgtgttgctaaggtcactggtggtgcacccaacaagctctcca 47805524  T
Q  261 a 261  Q
    |    
T  47805525 a 47805525  T

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Target: scaffold1348 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 1581 - 1645
Alignment:
Q  8 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 72  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  1581 tatgtgatgcatgaaatgtatgtttagttagcgcatgtatgagatgtatgcttaacatgttttag 1645  T

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Target: scaffold0061 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 4071 - 4007
Alignment:
Q  8 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 72  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  4071 tatgtgatgcatgaaatgtatgtttagttagcgcatgtatgagatgtatgcttaacatgttttag 4007  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 19986741 - 19986665
Alignment:
Q  161 accaaagctgatctattggctcagctcaaagacctcaaagctgaactagctttgctccatgttgctaaggccactgg 237  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||  ||||||||||| ||||||    
T  19986741 accaaagctgatctgttggctcagctcaaagacctcaaggctgaactcgctttgctctgtgttgctaaggtcactgg 19986665  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 16800345 - 16800299
Alignment:
Q  8 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgt 54  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  16800345 tatgtgatgcatgaaatgtatgtttagctaacacatgtataagatgt 16800299  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 17194658 - 17194594
Alignment:
Q  8 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 72  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  17194658 tatgtgatgcatgaaatgtatgtttagttagcgcatgtatgagatgtatgcttaacttgttttag 17194594  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 15604911 - 15604846
Alignment:
Q  8 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatg-tttaacatgttttag 72  Q
    |||||||||||||||||||||| ||| ||| |||||||||  |||||||| || ||||||||||||    
T  15604911 tatgtgatgcatgaaatgtatgattatttagcgcatgtatatgatgtatgcttaaacatgttttag 15604846  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 24638833 - 24638897
Alignment:
Q  8 tatgtgatgcatgaaatgtatgtttagttaacgcatgtatgagatgtatgtttaacatgttttag 72  Q
    ||||||||||||| |||||||||||||||| | |||| |||||||||||| ||||||||||||||    
T  24638833 tatgtgatgcatgtaatgtatgtttagttagcacatgcatgagatgtatgcttaacatgttttag 24638897  T

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