View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_14 (Length: 315)
Name: NF8751_low_14
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 5 - 297
Target Start/End: Original strand, 51527515 - 51527808
Alignment:
| Q |
5 |
atatttgtctgtttggctttctggtttgaaacatgttcattacgcaatctgataaggttgcgcaccttagagggcaccttaatccaatggtgaataaata |
104 |
Q |
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| T |
51527515 |
atatttgtctgtttggctttctggtttgaaacatgttcattacgcaatctgataaggttgcgcaccttagagggcaccttaatccaatggtgaataaata |
51527614 |
T |
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| Q |
105 |
ttgtaatgatgcaacatcaatattattccttgtgcttattagagagttaataaatttatatgtgatg-nnnnnnnnctcaattttgtttttgatgcttaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51527615 |
ttgtaatgatgcaacatcaatattattccttgtgcttattagagagttaataaatttatatgtgatgtttttttttctcaattttgtttttgatgcttaa |
51527714 |
T |
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| Q |
204 |
gctctaattcttgacagggtttgtgagttaattaatttgagagtgggaatctgaatctgtatctaaatggaggctgaaaaggatgcgtctatca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
51527715 |
gctctaattcttgacagggtttgtgagttaattaatttgagagtgggaatctgaatctgtatataaatggaggctgaaaaggatgtgtctatca |
51527808 |
T |
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