View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_18 (Length: 278)
Name: NF8751_low_18
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_18 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0122 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 38363576 - 38363299
Alignment:
| Q |
1 |
ttggtgtttggcatgcaggctgggtctagtgagtggctgcaaatgaatcatttatggggtgcaaattggaacattgttacaggacctttgagaggacctt |
100 |
Q |
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| T |
38363576 |
ttggtgtttggcatgcaggctggatctagtgagtggctacaaatgaatcatctatggggtgcaaattggaacattgttacaggacctttgagaggacctt |
38363477 |
T |
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| Q |
101 |
tctctgtgaaattaagcacgtcaacggggaaaagcctcactgctaaagatgtcattccaagtcattggtctccaaaatccacttatacctctcgcctaaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38363476 |
tctctgtgaaattaagcacgtcaacgggaaaaagcctcactgctaaagatgtcattccaagtcattggtctccaaaatccacttatacctctcgcctaaa |
38363377 |
T |
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| Q |
201 |
tttctctccttgaactaattaagcttactcccaaagggagttggtaaataatattataagcaccttttaccaagataa |
278 |
Q |
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| T |
38363376 |
tttctctccttgaactaattaagcttactcccaaagggagttggtaaataatattataagcaccttttaccaagataa |
38363299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 38369935 - 38369655
Alignment:
| Q |
1 |
ttggtgtttggcatgcaggctgggtctagtgagtggctgcaaatgaatcatttatggggtgcaaattggaacattgttacaggacctttgagaggacctt |
100 |
Q |
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| T |
38369935 |
ttggtgtttggtatgcaggctgggtctagtgagtggctgcaaatgaatcatttatggggtgcaaattggaacattgttacaggacctttgagaggacctt |
38369836 |
T |
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| Q |
101 |
tctctgtgaaattaagcacgtcaacggggaaaagcctcactgctaaagatgtcattccaagtcattggtctccaaaatccacttatacctctcgcctaaa |
200 |
Q |
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||||||||||||||||||| |||||||| |||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||| || ||| |||| |
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| T |
38369835 |
tctctgtgaaattaagcacatcaacgggaaaaagcatcactgttaaagatgttattccaagtaattggtctccaaaatccacttatacatcacgcttaaa |
38369736 |
T |
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| Q |
201 |
tttctctccttgaactaattaagcttactcccaaagggagttg---gtaaataa-tattataagcaccttttaccaagata |
277 |
Q |
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|||| |||||| ||||||||||||| ||||||||||||||| | |||||||| || |||||| ||| |||||||||||| |
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| T |
38369735 |
tttcactccttaaactaattaagctcactcccaaagggagtggtaagtaaataattaatataagtaccatttaccaagata |
38369655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 6666 - 6584
Alignment:
| Q |
25 |
tctagtgagtggctgcaaatgaatcatttatggggtgcaaattggaacattgttacaggacctttgagaggacctttctctgt |
107 |
Q |
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|||||||||||||| |||||||||||| | ||||||||||||||| |||| || |||||||| || ||||| |||||||| |
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| T |
6666 |
tctagtgagtggctacaaatgaatcatctgtggggtgcaaattggtgcattattgggggacctttaaggggaccattctctgt |
6584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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