View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_2 (Length: 640)
Name: NF8751_low_2
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 259 - 629
Target Start/End: Original strand, 46900580 - 46900951
Alignment:
| Q |
259 |
cttattcagttttgatatgtgatctagtgaac-aagaaagatgtttctttgtatattttatgttatatgtcatgctcatttttggtttctatcttctata |
357 |
Q |
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| T |
46900580 |
cttattcagttttgatatgtgatctagtgaactaagaaagatgtttctttgtatattaaatgttatatgtcatgcttatttttggtttctatcttctata |
46900679 |
T |
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| Q |
358 |
caagcttgtccttctataaatctgtcatgttctatcttctcgtacctgatactcgtacttggtactttataaccttgtccatgcaacataggtgtccagt |
457 |
Q |
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| T |
46900680 |
caagcttgtccttctataaatctgtcatgttctatcttctcgtacctgatactcgtacttggtaccctataaccttgtccatgcaacataggtgtccagt |
46900779 |
T |
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| Q |
458 |
aattcccacaccgaagtgactgattttttctttcaatcatatcatacaattgaaatttgagtaattgcttttgcttgcgattcggaacaatcaactatta |
557 |
Q |
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| T |
46900780 |
aattcccacaccgaagtgactgattttatctttcaatcatatcatacaattgaaatttgagtaattgcttttgcttgcgattcggaacaatcaactatta |
46900879 |
T |
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| Q |
558 |
tattttgttcatctttccaatcctgtttcgtcttttggtttctgctaatggttgcctgtaaatttgatgtcc |
629 |
Q |
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| T |
46900880 |
tattttgttcatctttccaatcctgtttcgtcttttggtttctgctaatggttgcctgtaaatttaatgtcc |
46900951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 46900348 - 46900527
Alignment:
| Q |
17 |
attaggaataatttgtgaaagatttccttcttgtgatcgactatgcagcatggtagtacaaattgaaatcatactcttactgtacttgtggtaacgtacc |
116 |
Q |
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| T |
46900348 |
attaggaataacttgtgaaagatttccttcttgtgatcgactatgcagcatggtagtacaaattgaaatcatactcttactgtacttgtggtaacgtacc |
46900447 |
T |
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| Q |
117 |
gagtatgtaccaaaattacttttgaattataaacgctagatactccacttggatacactaggatagttttacgatatgtacccgtggtac |
206 |
Q |
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| T |
46900448 |
aagtatgtaccaaaattacttttgaattataaacgctagatactccact----------aggatagttttacgatatgtacacgtggtac |
46900527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 46900269 - 46900298
Alignment:
| Q |
21 |
ggaataatttgtgaaagatttccttcttgt |
50 |
Q |
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| T |
46900269 |
ggaataatttgtgaaagatttccttcttgt |
46900298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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