View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8751_low_4 (Length: 455)
Name: NF8751_low_4
Description: NF8751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8751_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 426
Target Start/End: Original strand, 7550126 - 7550538
Alignment:
| Q |
14 |
cacaaacttagttgtcatcaatcaagttagtgtgctgtgtcagaaatatatctcaaccaagcatctgaattctgatgaaaatcacataaggatcagaccc |
113 |
Q |
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| T |
7550126 |
cacaaacttagttgtcatcaatcaagttagtgtgctgtgtcagaaatatatctcaaccaagcatctgaattctgatgaaaatcacataagaatcagaccc |
7550225 |
T |
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| Q |
114 |
ttcaactaccaaatgcacaataatcatttaattttgttcctatgtcaaagttctatttacaaaacaatcatgaactcatggttgagtctagcagaagaag |
213 |
Q |
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| T |
7550226 |
ttcaactaccaaatgcacaataatcattttattttgttcctatgtcaaagttctatttacaaaacaatcatggactcatggttgagtctagcagaagaag |
7550325 |
T |
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| Q |
214 |
ctaatcttttataacgtaaggcgtcaaagttcgaagctcaactcgaacaaaattaccttacttaaaaggaatttgtcacaaacaaaaagttttatttata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7550326 |
ttaatcttttataacgtaaggcgtcaaagttcgaagctcaactcgaacaaaattaccttacgtaaaaggaatttgtcacaaacaaaaagttttatttacg |
7550425 |
T |
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| Q |
314 |
gtgtgttaccatatatatagagaagttatatccattgttatgatgtgccattagtaaaagataaagctaatagaatttggaataagttagttatacacgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7550426 |
gtgtgttaccatatatatagagaagttatatccattgttatgatgtgccattagtaaaagataaagctaatagaatttggaataagttagttatacacgg |
7550525 |
T |
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| Q |
414 |
caagacggaacac |
426 |
Q |
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| T |
7550526 |
caagacggaacac |
7550538 |
T |
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